Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35142 Trifolium pratense HOM05D000650 ORTHO05D007302 7.7e-52 206.8 102 100.0
Medtr4g093510 Medicago truncatula HOM05D000650 ORTHO05D007302 3.5e-28 128.3 174 46.0
Psat7g102080 Pisum sativum HOM05D000650 ORTHO05D007302 3.3e-26 121.7 175 44.6
Medtr4g093260 Medicago truncatula HOM05D000650 ORTHO05D007302 5.7e-23 110.9 174 42.5
Medtr4g093270 Medicago truncatula HOM05D000650 ORTHO05D007302 3.7e-22 108.2 174 40.8
TPR.G16877 Trifolium pratense HOM05D000650 ORTHO05D007302 6.3e-22 107.5 230 35.2
Medtr4g093280 Medicago truncatula HOM05D000650 ORTHO05D007302 2.4e-21 105.5 173 41.6
Lj4g0012325 Lotus japonicus HOM05D000650 ORTHO05D007302 1.6e-20 102.8 175 37.7
Lj4g0020470 Lotus japonicus HOM05D000650 ORTHO05D007302 1.6e-20 102.8 175 37.7
Lj4g0020146 Lotus japonicus HOM05D000650 ORTHO05D007302 2.3e-19 99.0 173 37.6
TPR.G20268 Trifolium pratense HOM05D000650 ORTHO05D007302 6.6e-19 97.4 52 86.5
Psat7g102120 Pisum sativum HOM05D000650 ORTHO05D007302 8.6e-19 97.1 150 45.3
Psat7g102160 Pisum sativum HOM05D000650 ORTHO05D007302 1.4e-16 89.7 133 45.1
Glyma.08G066700 Glycine max HOM05D000650 ORTHO05D007302 8.9e-16 87.0 182 34.6
Lalb_Chr16g0383011 Lupinus albus HOM05D000650 ORTHO05D007302 4.4e-15 84.7 184 32.6
Lj4g0018033 Lotus japonicus HOM05D000650 ORTHO05D007302 1.8e-13 79.3 52 69.2
VMungo0251G0586 Vigna mungo HOM05D000650 ORTHO05D007302 1.8e-13 79.3 52 69.2
TPR.G18351 Trifolium pratense HOM05D000650 ORTHO05D007302 1.6e-12 76.3 40 90.0
TPR.G2867 Trifolium pratense HOM05D000650 ORTHO05D007302 4.6e-12 74.7 41 85.4
Ca_18401_v3 Cicer arietinum L. HOM05D000650 ORTHO05D007302 5.0e-11 71.2 52 71.2
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.6e-09 66.2 55 54.5
GSVIVG01012547001 Vitis vinifera HOM05D000650 ORTHO05D000735 2.1e-09 65.9 52 55.8
GSVIVG01000325001 Vitis vinifera HOM05D000650 ORTHO05D000735 2.8e-09 65.5 52 55.8
GSVIVG01012543001 Vitis vinifera HOM05D000650 ORTHO05D007302 4.7e-09 64.7 52 55.8
Duzib132G0086 Durio zibethinus HOM05D000650 ORTHO05D007302 6.2e-09 64.3 52 53.8
Haze_10689 Corylus avellana HOM05D000650 ORTHO05D007302 8.0e-09 63.9 55 52.7
RcHm_v2.0_Chr6g0270081 Rosa chinensis HOM05D000650 ORTHO05D007302 8.0e-09 63.9 52 55.8
GSVIVG01000320001 Vitis vinifera HOM05D000650 ORTHO05D007302 1.4e-08 63.2 52 51.9
GSVIVG01000324001 Vitis vinifera HOM05D000650 ORTHO05D000735 1.4e-08 63.2 52 50.0
RcHm_v2.0_Chr6g0270151 Rosa chinensis HOM05D000650 ORTHO05D007302 1.8e-08 62.8 52 51.9
RcHm_v2.0_Chr6g0270171 Rosa chinensis HOM05D000650 ORTHO05D007302 1.8e-08 62.8 51 54.9
Haze_10696 Corylus avellana HOM05D000650 ORTHO05D007302 2.3e-08 62.4 51 56.9
RcHm_v2.0_Chr6g0270121 Rosa chinensis HOM05D000650 ORTHO05D007302 3.1e-08 62.0 51 54.9
TPR.G4817 Trifolium pratense HOM05D037704 ORTHO05D007302 3.1e-08 62.0 47 70.2
GSVIVG01038510001 Vitis vinifera HOM05D000650 ORTHO05D007302 4.0e-08 61.6 52 53.8
TPR.G39967 Trifolium pratense HOM05D037704 ORTHO05D007302 5.2e-08 61.2 47 68.1
DCAR_001849 Daucus carota HOM05D000650 ORTHO05D007302 6.8e-08 60.8 52 50.0
RcHm_v2.0_Chr6g0270191 Rosa chinensis HOM05D000650 ORTHO05D007302 6.8e-08 60.8 51 52.9
Rhsim11G0141200 Rhododendron simsii HOM05D000650 ORTHO05D007302 8.9e-08 60.5 55 52.7
Dinv08988 Davidia involucrata HOM05D000650 ORTHO05D000735 1.2e-07 60.1 52 51.9
Dinv08989 Davidia involucrata HOM05D000650 ORTHO05D000735 1.2e-07 60.1 52 51.9
Thecc.02G127100 Theobroma cacao HOM05D000650 ORTHO05D007302 1.2e-07 60.1 51 51.0
Gohir.A03G178000 Gossypium hirsutum HOM05D000650 ORTHO05D007302 1.5e-07 59.7 51 52.9
Gohir.D02G201700 Gossypium hirsutum HOM05D000650 ORTHO05D007302 1.5e-07 59.7 51 52.9
Gorai.005G226700 Gossypium raimondii HOM05D000650 ORTHO05D007302 1.5e-07 59.7 51 52.9
QL11p025811 Quercus lobata HOM05D000650 ORTHO05D007302 1.5e-07 59.7 52 51.9
Haze_10698 Corylus avellana HOM05D000650 ORTHO05D000735 2.0e-07 59.3 51 52.9
TWI59G0327 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 2.6e-07 58.9 51 58.8
Prupe.8G072900 Prunus persica HOM05D000650 ORTHO05D007302 3.4e-07 58.5 52 48.1
Prupe.8G229300 Prunus persica HOM05D000650 ORTHO05D000735 3.4e-07 58.5 52 48.1
Duzib248G1171 Durio zibethinus HOM05D000650 ORTHO05D007302 4.4e-07 58.2 51 51.0
Prupe.8G072600 Prunus persica HOM05D000650 ORTHO05D007302 4.4e-07 58.2 52 48.1
Rhsim11G0141100 Rhododendron simsii HOM05D000650 ORTHO05D007302 4.4e-07 58.2 55 50.9
HPP92_016857 Vanilla planifolia HOM05D000650 ORTHO05D000735 4.4e-07 58.2 69 46.4
QL11p025817 Quercus lobata HOM05D000650 ORTHO05D007302 5.8e-07 57.8 52 50.0
TWI14G0488 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 5.8e-07 57.8 51 54.9
Dinv24138 Davidia involucrata HOM05D000650 ORTHO05D007302 7.5e-07 57.4 51 51.0
Rhsim11G0141400 Rhododendron simsii HOM05D002143 ORTHO05D002260 7.5e-07 57.4 50 52.0
FvH4_2g11450 Fragaria vesca HOM05D000650 ORTHO05D007302 9.8e-07 57.0 51 52.9
FAN24G2673 Fragaria x ananassa HOM05D000650 ORTHO05D000735 9.8e-07 57.0 51 52.9
Manes.10G096300 Manihot esculenta HOM05D000650 ORTHO05D007302 9.8e-07 57.0 52 55.8
Rhsim11G0142600 Rhododendron simsii HOM05D002143 ORTHO05D338981 9.8e-07 57.0 55 50.9
vmacro01872 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 9.8e-07 57.0 55 49.1
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 1.7e-06 56.2 50 48.0
Nitab4.5_0002290g0120 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.7e-06 56.2 56 50.0
Nitab4.5_0004586g0040 Nicotiana tabacum HOM05D000650 ORTHO05D007302 1.7e-06 56.2 56 50.0
Oeu063550.2 Olea europaea HOM05D000650 ORTHO05D007302 1.7e-06 56.2 51 51.0
CSS0041479 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D007302 2.2e-06 55.8 50 50.0
CANSAT54G2685 Cannabis sativa HOM05D000650 ORTHO05D007302 2.2e-06 55.8 51 52.9
COL.COLO4_32414 Corchorus olitorius HOM05D000650 ORTHO05D007302 2.2e-06 55.8 51 45.1
DCAR_029285 Daucus carota HOM05D000650 ORTHO05D007302 2.2e-06 55.8 51 49.0
FAN20G2101 Fragaria x ananassa HOM05D000650 ORTHO05D007302 2.2e-06 55.8 51 51.0
Nitab4.5_0012000g0010 Nicotiana tabacum HOM05D000650 ORTHO05D007302 2.2e-06 55.8 56 50.0
FAN27G0840 Fragaria x ananassa HOM05D000650 ORTHO05D007302 2.9e-06 55.5 51 51.0
vmacro16686 Vaccinium macrocarpon HOM05D000650 ORTHO05D000735 2.9e-06 55.5 50 52.0
CSS0042971 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D000735 3.7e-06 55.1 50 50.0
COL.COLO4_32413 Corchorus olitorius HOM05D000027 ORTHO05D001579 3.7e-06 55.1 51 49.0
Lj5A228T42 Lonicera japonica HOM05D000650 ORTHO05D007302 3.7e-06 55.1 50 50.0
Sabra16G0176200 Salix brachista HOM05D000650 ORTHO05D000735 3.7e-06 55.1 64 46.9
Lj5C228T13 Lonicera japonica HOM05D002783 ORTHO05D003055 4.9e-06 54.7 50 50.0
Nitab4.5_0001259g0050 Nicotiana tabacum HOM05D000650 ORTHO05D007302 4.9e-06 54.7 56 51.8
PGR102G2334 Punica granatum HOM05D000650 ORTHO05D000735 4.9e-06 54.7 55 50.9
QL11p029412 Quercus lobata HOM05D000650 ORTHO05D007302 4.9e-06 54.7 52 53.8
Aa31LG4G11080 Aethionema arabicum HOM05D000650 ORTHO05D000735 6.4e-06 54.3 50 48.0
CSS0029976 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D007302 6.4e-06 54.3 50 48.0
CAN.G531.4 Capsicum annuum HOM05D000650 ORTHO05D007302 6.4e-06 54.3 56 48.2
Cpa.g.sc128.5 Carica papaya HOM05D000650 ORTHO05D000735 6.4e-06 54.3 52 46.2
Nitab4.5_0002750g0080 Nicotiana tabacum HOM05D000650 ORTHO05D007302 6.4e-06 54.3 49 51.0
Rhsim11G0141300 Rhododendron simsii HOM05D000650 ORTHO05D007302 6.4e-06 54.3 50 48.0
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 8.3e-06 53.9 51 54.9
Haze_10691 Corylus avellana HOM05D000650 ORTHO05D007302 8.3e-06 53.9 57 49.1
Dinv16632 Davidia involucrata HOM05D000650 ORTHO05D000735 8.3e-06 53.9 50 50.0
TWI14G0262 Tripterygium wilfordii HOM05D000650 ORTHO05D000735 8.3e-06 53.9 51 51.0
vmacro01871 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 8.3e-06 53.9 55 45.5
vmacro01873 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 8.3e-06 53.9 55 49.1
HPP92_016913 Vanilla planifolia HOM05D000650 ORTHO05D000735 8.3e-06 53.9 52 51.9


User provided reference genes

Program Settings