Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 1.8e-150 536.2 341 100.0
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 9.3e-94 347.8 385 55.1
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 2.7e-85 319.7 352 55.4
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 2.7e-77 293.1 362 58.0
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 1.1e-57 228.0 371 45.3
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 9.4e-54 214.9 364 45.3
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 5.2e-52 209.1 365 42.5
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 8.3e-50 201.8 341 56.3
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 7.0e-49 198.7 389 44.2
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 1.0e-47 194.9 387 39.3
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 9.8e-43 178.3 402 49.0
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 1.9e-30 137.5 310 35.8
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 4.9e-26 122.9 407 35.1
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 5.0e-23 112.8 367 31.6
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 1.4e-20 104.8 366 34.4
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 6.8e-20 102.4 361 28.5
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 8.9e-20 102.1 365 32.6
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 2.0e-19 100.9 346 33.5
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.4e-19 100.1 388 28.6
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 3.4e-19 100.1 357 30.3
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 9.9e-19 98.6 384 32.6
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 3.7e-18 96.7 141 46.1
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 4.9e-18 96.3 371 38.5
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.4e-17 94.7 371 34.2
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 2.4e-17 94.0 365 28.8
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 7.1e-17 92.4 379 33.2
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 7.8e-16 89.0 376 33.8
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 7.8e-16 89.0 373 31.6
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 1.0e-15 88.6 436 40.1
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 3.0e-15 87.0 377 28.9
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 3.9e-15 86.7 348 32.8
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 3.9e-15 86.7 348 34.5
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 6.6e-15 85.9 380 30.8
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 8.6e-15 85.5 391 34.8
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 8.6e-15 85.5 348 29.6
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 8.6e-15 85.5 346 32.1
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.1e-14 85.1 350 32.9
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 1.1e-14 85.1 372 41.7
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 2.5e-14 84.0 399 42.6
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 2.5e-14 84.0 377 29.2
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 2.5e-14 84.0 360 39.7
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 3.3e-14 83.6 383 29.0
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 4.3e-14 83.2 363 28.9
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 9.5e-14 82.0 356 29.8
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.2e-13 81.6 347 29.1
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.2e-13 81.6 363 34.2
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.6e-13 81.3 349 28.4
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 2.1e-13 80.9 351 27.9
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 3.6e-13 80.1 348 29.3
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 3.6e-13 80.1 391 28.1
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 3.6e-13 80.1 386 31.3
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 4.7e-13 79.7 348 29.3
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 6.2e-13 79.3 348 29.3
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 6.2e-13 79.3 367 28.3
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 8.1e-13 79.0 357 37.5
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 8.1e-13 79.0 398 27.1
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.4e-12 78.2 398 30.2
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 3.1e-12 77.0 416 30.0
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.2e-11 75.1 150 40.7
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 1.5e-11 74.7 339 28.0
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 1.5e-11 74.7 344 28.8
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.5e-11 74.7 445 33.3
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 2.0e-11 74.3 348 27.6
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 2.0e-11 74.3 335 28.7
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 2.6e-11 73.9 344 28.8
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 2.6e-11 73.9 345 28.4
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 2.6e-11 73.9 353 28.6
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 4.4e-11 73.2 361 27.7
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 5.8e-11 72.8 343 30.9
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 7.6e-11 72.4 385 26.5
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.3e-10 71.6 416 40.6
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.3e-10 71.6 366 36.1
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 2.2e-10 70.9 382 31.2
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 2.9e-10 70.5 160 40.0
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 2.9e-10 70.5 435 33.6
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 2.9e-10 70.5 376 27.4
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 3.8e-10 70.1 356 27.2
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 3.8e-10 70.1 357 30.8
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 4.9e-10 69.7 351 28.8
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 4.9e-10 69.7 191 35.1
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 8.4e-10 68.9 339 27.7
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 8.4e-10 68.9 373 27.9
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 8.4e-10 68.9 368 33.2
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 1.1e-09 68.6 355 43.9
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.4e-09 68.2 349 29.8
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 3.2e-09 67.0 361 32.4
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 3.2e-09 67.0 345 28.7
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 4.1e-09 66.6 366 31.7
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.2e-08 65.1 303 32.0
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.2e-08 65.1 414 38.6
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 2.1e-08 64.3 345 28.7
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.1e-08 64.3 371 37.5
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 2.1e-08 64.3 360 29.2
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.7e-08 63.9 149 36.9
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 2.7e-08 63.9 379 36.9
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 6.0e-08 62.8 343 30.6
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 1.0e-07 62.0 358 29.6
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 1.3e-07 61.6 104 42.3
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 1.7e-07 61.2 354 30.2
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.7e-07 61.2 381 28.3
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 3.0e-07 60.5 73 46.6
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 3.9e-07 60.1 341 32.0
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 8.6e-07 58.9 363 31.4
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 1.5e-06 58.2 79 44.3
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.5e-06 57.4 97 42.3
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 3.3e-06 57.0 147 36.1


User provided reference genes

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