Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34663 Trifolium pratense HOM05D000949 ORTHO05D412175 5.0e-34 147.1 70 100.0
Peaxi162Scf00699g00521 Petunia axillaris HOM05D000949 ORTHO05D001276 5.2e-07 57.4 29 89.7
EL10Ac2g03972 Beta vulgaris HOM05D000949 ORTHO05D001276 1.2e-06 56.2 29 86.2
Actinidia01217 Actinidia chinensis HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
ATR0705G203 Amborella trichopoda HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
AT2G25850 Arabidopsis thaliana HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
arahy.Tifrunner.gnm1.ann1.ZZJI2X Arachis hypogaea HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
Carub.0004s0568 Capsella rubella HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
Thhalv10001908m.g Eutrema salsugineum HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
Glyma.04G086800 Glycine max HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
Glyma.06G088500 Glycine max HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
Medtr3g110375 Medicago truncatula HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
Phvul.009G112300 Phaseolus vulgaris HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
Psat5g018400 Pisum sativum HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
RcHm_v2.0_Chr6g0306691 Rosa chinensis HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
TPR.G12503 Trifolium pratense HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
TAR624G1232 Trochodendron aralioides HOM05D000949 ORTHO05D015541 1.5e-06 55.8 29 86.2
VMungo1309G1610 Vigna mungo HOM05D000949 ORTHO05D001276 1.5e-06 55.8 29 86.2
MBI01_g10121_MAGBIO Magnolia biondii HOM05D000949 ORTHO05D001276 2.0e-06 55.5 29 82.8
THA.LOC104803802 Tarenaya hassleriana HOM05D000949 ORTHO05D001276 2.0e-06 55.5 29 86.2
CAN.G20.14 Capsicum annuum HOM05D000949 ORTHO05D001276 2.6e-06 55.1 29 82.8
AUR62009223 Chenopodium quinoa HOM05D000949 ORTHO05D001276 2.6e-06 55.1 29 82.8
AUR62040222 Chenopodium quinoa HOM05D000949 ORTHO05D001276 2.6e-06 55.1 29 82.8
AL4G17690 Arabidopsis lyrata HOM05D000949 ORTHO05D001276 3.3e-06 54.7 29 82.8
Aa31sc996G10 Aethionema arabicum HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
AL7G18870 Arabidopsis lyrata HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
AT4G32850 Arabidopsis thaliana HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
arahy.Tifrunner.gnm1.ann1.Y407WK Arachis hypogaea HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
A01p05440 Brassica napus HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
C01p06040 Brassica napus HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
BolC1t00597H Brassica oleracea HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
BraA01t00517Z Brassica rapa HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Carub.0007s0764 Capsella rubella HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
CARHR240850 Cardamine hirsuta HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Thhalv10024486m.g Eutrema salsugineum HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
FvH4_2g35240 Fragaria vesca HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
FAN15G1396 Fragaria x ananassa HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
FAN20G1860 Fragaria x ananassa HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
FAN27G1756 Fragaria x ananassa HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Gohir.A07G022233 Gossypium hirsutum HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Gohir.D07G024800 Gossypium hirsutum HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Gorai.001G025700 Gossypium raimondii HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Gorai.001G025900 Gossypium raimondii HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Lj1g0014753 Lotus japonicus HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Nn6g35338 Nelumbo nucifera HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Nn8g39051 Nelumbo nucifera HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Nitab4.5_0000318g0150 Nicotiana tabacum HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Nitab4.5_0005618g0020 Nicotiana tabacum HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Potri.006G235400 Populus trichocarpa HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Potri.018G057200 Populus trichocarpa HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
QL12p040925 Quercus lobata HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Sabra18G0052100 Salix brachista HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Solyc08g066200.3 Solanum lycopersicum HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
Sopen08g019880 Solanum pennellii HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
HPP92_009805 Vanilla planifolia HOM05D000949 ORTHO05D001276 4.4e-06 54.3 29 82.8
PSO210G1054 Papaver somniferum HOM05D000949 ORTHO05D001276 5.7e-06 53.9 29 79.3
PSO210G1779 Papaver somniferum HOM05D000949 ORTHO05D001276 5.7e-06 53.9 29 79.3
Atru.chr7.2051 Acer truncatum HOM05D000949 ORTHO05D001276 7.5e-06 53.5 28 82.1
CSS0001132 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D001276 7.5e-06 53.5 29 82.8
CDE05G0018 Ceratophyllum demersum HOM05D000949 ORTHO05D001276 7.5e-06 53.5 29 79.3
Ca_15568_v3 Cicer arietinum L. HOM05D000949 ORTHO05D001276 7.5e-06 53.5 29 82.8
Gohir.D05G046800 Gossypium hirsutum HOM05D000949 ORTHO05D001276 7.5e-06 53.5 29 82.8
Gorai.009G048100 Gossypium raimondii HOM05D000949 ORTHO05D001276 7.5e-06 53.5 29 82.8
MD09G1202100 Malus domestica HOM05D000949 ORTHO05D001276 7.5e-06 53.5 29 82.8
Prupe.3G057700 Prunus persica HOM05D000949 ORTHO05D001276 7.5e-06 53.5 29 82.8
Actinidia09008 Actinidia chinensis HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
Actinidia39133 Actinidia chinensis HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
CiPaw.08G027300 Carya illinoinensis HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 79.3
COL.COLO4_21002 Corchorus olitorius HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 79.3
DCAR_007587 Daucus carota HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
DCAR_026355 Daucus carota HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
Dinv30431 Davidia involucrata HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
Migut.D00987 Erythranthe guttata HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
Hma1.2p1_0430F.1_g151330 Hydrangea macrophylla HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
Lsat_1_v5_gn_4_98440 Lactuca sativa HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
Lj9C514T7 Lonicera japonica HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
Lalb_Chr08g0242901 Lupinus albus HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
Manes.04G134800 Manihot esculenta HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
QL05p019739 Quercus lobata HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
Rhsim11G0049600 Rhododendron simsii HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 79.3
SalBow2G0647 Salvia bowleyana HOM05D000949 ORTHO05D015541 9.7e-06 53.1 29 82.8
Sp4g05670 Schrenkiella parvula HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
THA.LOC104803745 Tarenaya hassleriana HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8
TWI75G0564 Tripterygium wilfordii HOM05D000949 ORTHO05D001276 9.7e-06 53.1 29 82.8


User provided reference genes

Program Settings