Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34206 Trifolium pratense HOM05D009291 ORTHO05D010716 2.3e-122 442.2 215 100.0
TPR.G633 Trifolium pratense HOM05D000107 ORTHO05D010716 3.2e-39 166.0 97 76.3
TPR.G7518 Trifolium pratense HOM05D009291 ORTHO05D010716 1.2e-35 154.1 75 93.3
Medtr0002s1270 Medicago truncatula HOM05D009291 ORTHO05D010716 9.3e-23 111.3 99 54.5
Medtr5g077900 Medicago truncatula HOM05D009291 ORTHO05D010716 9.3e-23 111.3 99 54.5
Medtr7g046380 Medicago truncatula HOM05D009291 ORTHO05D010716 9.3e-23 111.3 99 54.5
TPR.G24693 Trifolium pratense HOM05D009291 ORTHO05D010716 7.8e-22 108.2 99 59.6
TPR.G33090 Trifolium pratense HOM05D009291 ORTHO05D010716 2.3e-21 106.7 50 94.0
TPR.G30779 Trifolium pratense HOM05D009291 ORTHO05D010716 1.5e-20 104.0 61 75.4
Psat1g024400 Pisum sativum HOM05D000173 ORTHO05D008065 3.3e-20 102.8 72 69.4
Medtr2g445210 Medicago truncatula HOM05D000173 ORTHO05D008065 9.6e-20 101.3 69 73.9
Ca_02766_v3 Cicer arietinum L. HOM05D000173 ORTHO05D008065 1.3e-19 100.9 64 75.0
Lalb_Chr08g0234671 Lupinus albus HOM05D000173 ORTHO05D008065 1.6e-19 100.5 72 69.4
ClCG11G003220 Citrullus lanatus HOM05D000173 ORTHO05D008065 3.6e-19 99.4 63 74.6
Gohir.A06G054400 Gossypium hirsutum HOM05D000173 ORTHO05D008065 6.2e-19 98.6 64 70.3
Gohir.D06G053300 Gossypium hirsutum HOM05D000173 ORTHO05D008065 6.2e-19 98.6 64 70.3
Gorai.010G062300 Gossypium raimondii HOM05D000173 ORTHO05D008065 6.2e-19 98.6 64 70.3
Potri.018G128300 Populus trichocarpa HOM05D000173 ORTHO05D008065 8.1e-19 98.2 64 70.3
CANSAT11G2412 Cannabis sativa HOM05D000173 ORTHO05D008065 1.4e-18 97.4 82 61.0
MELO3C004459.2 Cucumis melo HOM05D000173 ORTHO05D008065 1.4e-18 97.4 80 62.5
CsaV3_2G003040 Cucumis sativus L. HOM05D000173 ORTHO05D008065 1.4e-18 97.4 92 57.6
COL.COLO4_35124 Corchorus olitorius HOM05D000173 ORTHO05D008065 2.4e-18 96.7 69 65.2
Glyma.04G071500 Glycine max HOM05D000173 ORTHO05D008065 2.4e-18 96.7 62 71.0
Lj6g0009868 Lotus japonicus HOM05D000173 ORTHO05D008065 9.0e-18 94.7 72 63.9
arahy.Tifrunner.gnm1.ann1.VL0260 Arachis hypogaea HOM05D000173 ORTHO05D008065 1.2e-17 94.4 77 63.6
Manes.06G056200 Manihot esculenta HOM05D000173 ORTHO05D008065 1.2e-17 94.4 72 66.7
Phvul.003G068000 Phaseolus vulgaris HOM05D000173 ORTHO05D008065 1.2e-17 94.4 62 69.4
Gohir.A07G036900 Gossypium hirsutum HOM05D000173 ORTHO05D008065 1.5e-17 94.0 69 63.8
Gohir.D07G041100 Gossypium hirsutum HOM05D000173 ORTHO05D008065 1.5e-17 94.0 69 63.8
Gorai.001G043500 Gossypium raimondii HOM05D000173 ORTHO05D008065 1.5e-17 94.0 69 63.8
Sed0025274 Sechium edule HOM05D000173 ORTHO05D008065 1.5e-17 94.0 63 71.4
TPR.G476 Trifolium pratense HOM05D000200 ORTHO05D000262 1.5e-17 94.0 45 93.3
VMungo0251G0991 Vigna mungo HOM05D000173 ORTHO05D008065 1.5e-17 94.0 62 69.4
CiPaw.03G247000 Carya illinoinensis HOM05D000173 ORTHO05D008065 2.0e-17 93.6 73 64.4
Thecc.09G129900 Theobroma cacao HOM05D000173 ORTHO05D008065 2.0e-17 93.6 69 63.8
FvH4_1g02800 Fragaria vesca HOM05D000173 ORTHO05D008065 3.4e-17 92.8 64 67.2
FAN19G1255 Fragaria x ananassa HOM05D000173 ORTHO05D008065 3.4e-17 92.8 64 67.2
FAN23G2413 Fragaria x ananassa HOM05D000173 ORTHO05D008065 3.4e-17 92.8 64 67.2
FAN23G3073 Fragaria x ananassa HOM05D000173 ORTHO05D008065 3.4e-17 92.8 64 67.2
FAN26G0206 Fragaria x ananassa HOM05D000173 ORTHO05D008065 3.4e-17 92.8 64 67.2
FAN28G0768 Fragaria x ananassa HOM05D000173 ORTHO05D008065 3.4e-17 92.8 64 67.2
Ciclev10008344m.g Citrus clementina HOM05D000173 ORTHO05D008065 5.8e-17 92.0 72 63.9
arahy.Tifrunner.gnm1.ann1.78GREI Arachis hypogaea HOM05D000173 ORTHO05D008065 7.6e-17 91.7 92 56.5
arahy.Tifrunner.gnm1.ann1.L0MYGA Arachis hypogaea HOM05D000173 ORTHO05D008065 9.9e-17 91.3 62 69.4
Sabra18G0109100 Salix brachista HOM05D000173 ORTHO05D008065 9.9e-17 91.3 64 67.2
SHI28857 Sapria himalayana HOM05D000173 ORTHO05D008065 9.9e-17 91.3 67 67.2
TWI32G0173 Tripterygium wilfordii HOM05D000173 ORTHO05D008065 9.9e-17 91.3 85 56.5
Haze_25535 Corylus avellana HOM05D000173 ORTHO05D008065 1.3e-16 90.9 60 70.0
Haze_25540 Corylus avellana HOM05D000173 ORTHO05D008065 1.3e-16 90.9 60 70.0
TPR.G40662 Trifolium pratense HOM05D009291 ORTHO05D010716 1.7e-16 90.5 48 81.2
QL02p089534 Quercus lobata HOM05D000173 ORTHO05D008065 2.2e-16 90.1 74 59.5
RcHm_v2.0_Chr2g0087891 Rosa chinensis HOM05D000173 ORTHO05D008065 2.2e-16 90.1 60 68.3
Cfa003406 Carpinus fangiana HOM05D000173 ORTHO05D008065 4.9e-16 89.0 60 70.0
vmacro20579 Vaccinium macrocarpon HOM05D000173 ORTHO05D008065 4.9e-16 89.0 63 65.1
Prupe.7G246800 Prunus persica HOM05D000173 ORTHO05D008065 6.4e-16 88.6 60 68.3
arahy.Tifrunner.gnm1.ann1.093KP0 Arachis hypogaea HOM05D002360 ORTHO05D006297 8.4e-16 88.2 62 67.7
Carub.0016s0009 Capsella rubella HOM05D000173 ORTHO05D008065 8.4e-16 88.2 65 64.6
CARHR153600 Cardamine hirsuta HOM05D000173 ORTHO05D008065 8.4e-16 88.2 63 66.7
Atru.chr7.1116 Acer truncatum HOM05D000173 ORTHO05D008065 1.1e-15 87.8 64 62.5
MD15G1169700 Malus domestica HOM05D000173 ORTHO05D008065 1.1e-15 87.8 64 64.1
Aa31LG4G12770 Aethionema arabicum HOM05D000173 ORTHO05D008065 1.4e-15 87.4 72 58.3
GSVIVG01015556001 Vitis vinifera HOM05D000173 ORTHO05D008065 1.9e-15 87.0 63 63.5
MD02G1028000 Malus domestica HOM05D000173 ORTHO05D008065 2.4e-15 86.7 64 64.1
Thhalv10011531m.g Eutrema salsugineum HOM05D000173 ORTHO05D008065 4.2e-15 85.9 60 66.7
Aqoxy7G03664 Aquilegia oxysepala HOM05D000173 ORTHO05D008065 5.4e-15 85.5 65 60.0
BcaB04g16922 Brassica carinata HOM05D000173 ORTHO05D008065 5.4e-15 85.5 60 66.7
C03p93390 Brassica napus HOM05D003938 ORTHO05D008065 5.4e-15 85.5 60 66.7
BolC3t21636H Brassica oleracea HOM05D003938 ORTHO05D008065 5.4e-15 85.5 60 66.7
Dinv36494 Davidia involucrata HOM05D000173 ORTHO05D008065 5.4e-15 85.5 61 63.9
Nitab4.5_0000032g0140 Nicotiana tabacum HOM05D000173 ORTHO05D008065 5.4e-15 85.5 65 58.5
Sp1g41720 Schrenkiella parvula HOM05D000173 ORTHO05D008065 7.1e-15 85.1 60 65.0
Lj7A426T66 Lonicera japonica HOM05D000173 ORTHO05D008065 9.3e-15 84.7 65 60.0
AL5G20780 Arabidopsis lyrata HOM05D000173 ORTHO05D008065 1.6e-14 84.0 66 60.6
BcaB04g16923 Brassica carinata HOM05D000173 ORTHO05D008065 1.6e-14 84.0 60 65.0
A08p00110 Brassica napus HOM05D000173 ORTHO05D008065 1.6e-14 84.0 60 65.0
BraA08t32068Z Brassica rapa HOM05D003938 ORTHO05D008065 1.6e-14 84.0 60 65.0
Cpa.g.sc46.24 Carica papaya HOM05D000173 ORTHO05D008065 1.6e-14 84.0 64 60.9
SalBow6G5422 Salvia bowleyana HOM05D000173 ORTHO05D008065 1.6e-14 84.0 65 58.5
THA.LOC104815099 Tarenaya hassleriana HOM05D000173 ORTHO05D008065 1.6e-14 84.0 76 51.3
Rhsim01G0066700 Rhododendron simsii HOM05D000173 ORTHO05D008065 2.7e-14 83.2 64 60.9
AT3G33520 Arabidopsis thaliana HOM05D000173 ORTHO05D008065 3.5e-14 82.8 65 61.5
CSS0043826 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D008065 4.6e-14 82.4 61 67.2
Sopen05g015760 Solanum pennellii HOM05D000173 ORTHO05D008065 6.0e-14 82.0 65 58.5
PGSC0003DMG400014966 Solanum tuberosum HOM05D000173 ORTHO05D008065 6.0e-14 82.0 65 58.5
Migut.J01219 Erythranthe guttata HOM05D000173 ORTHO05D008065 7.9e-14 81.6 65 56.9
HanXRQChr10g0315711 Helianthus annuus HOM05D000173 ORTHO05D008065 7.9e-14 81.6 65 58.5
Oeu012615.1 Olea europaea HOM05D000173 ORTHO05D008065 7.9e-14 81.6 65 56.9
CAN.G560.5 Capsicum annuum HOM05D000173 ORTHO05D008065 1.0e-13 81.3 65 55.4
PSO170G4595 Papaver somniferum HOM05D000173 ORTHO05D008065 1.0e-13 81.3 63 58.7
PSO782G3791 Papaver somniferum HOM05D000173 ORTHO05D008065 1.0e-13 81.3 63 58.7
Solyc05g018600.3 Solanum lycopersicum HOM05D000173 ORTHO05D008065 1.0e-13 81.3 65 56.9
MSTRG.19615 Avicennia marina HOM05D000173 ORTHO05D008065 1.3e-13 80.9 65 52.3
Peaxi162Scf00148g00088 Petunia axillaris HOM05D000173 ORTHO05D008065 1.3e-13 80.9 65 55.4
PGR102G1368 Punica granatum HOM05D000173 ORTHO05D008065 1.3e-13 80.9 83 53.0
Lsat_1_v5_gn_5_96421 Lactuca sativa HOM05D000173 ORTHO05D008065 1.8e-13 80.5 65 56.9
SGA_v2.0_scaffold229G43307 Striga asiatica HOM05D000173 ORTHO05D008065 1.8e-13 80.5 65 53.8
ATR0767G250 Amborella trichopoda HOM05D000173 ORTHO05D008065 1.5e-12 77.4 62 54.8
TPR.G10953 Trifolium pratense HOM05D009291 ORTHO05D010716 1.5e-12 77.4 39 89.7
Cc06_g08200 Coffea canephora HOM05D000173 ORTHO05D008065 1.9e-12 77.0 65 52.3
unitig_60.g25514 Utricularia gibba HOM05D000173 ORTHO05D008065 1.9e-12 77.0 65 50.8
MBI04_g29331_MAGBIO Magnolia biondii HOM05D000173 ORTHO05D008065 2.5e-12 76.6 60 60.0
DCAR_017799 Daucus carota HOM05D000173 ORTHO05D008065 3.3e-12 76.3 65 58.5
TAR636G3437 Trochodendron aralioides HOM05D000173 ORTHO05D008065 4.3e-12 75.9 60 58.3
Nn2g12082 Nelumbo nucifera HOM05D000173 ORTHO05D008065 2.1e-11 73.6 61 52.5
Eucgr.C04260 Eucalyptus grandis HOM05D000173 ORTHO05D008065 2.8e-11 73.2 60 58.3
HPP92_009856 Vanilla planifolia HOM05D000173 ORTHO05D008065 3.6e-11 72.8 65 52.3
Psat7g147520 Pisum sativum HOM05D009291 ORTHO05D010716 8.1e-11 71.6 79 43.0
Medtr2g092960 Medicago truncatula HOM05D007793 ORTHO05D010104 1.4e-10 70.9 77 45.5
Nitab4.5_0001224g0050 Nicotiana tabacum HOM05D000173 ORTHO05D008065 4.0e-10 69.3 67 52.2
ECA234G2265 Erigeron canadensis HOM05D000173 ORTHO05D008065 1.2e-09 67.8 89 43.8
Psat5g041920 Pisum sativum HOM05D014768 ORTHO05D010716 2.0e-09 67.0 95 34.7
Actinidia21965 Actinidia chinensis HOM05D000173 ORTHO05D008065 2.6e-09 66.6 64 51.6
CDE07G0544 Ceratophyllum demersum HOM05D000173 ORTHO05D008065 2.6e-09 66.6 61 50.8
Mapoly0069s0083 Marchantia polymorpha HOM05D000173 ORTHO05D008065 5.8e-09 65.5 79 40.5
AUR62013322 Chenopodium quinoa HOM05D000173 ORTHO05D008065 2.9e-08 63.2 85 43.5
TPR.G20581 Trifolium pratense HOM05D000107 ORTHO05D000062 2.9e-08 63.2 36 83.3
Ah.09g225120 Amaranthus hybridus HOM05D000173 ORTHO05D008065 3.8e-08 62.8 52 55.8
Pp3c8_11640 Physcomitrium patens HOM05D000173 ORTHO05D008065 4.9e-08 62.4 60 43.3
Psat5g276440 Pisum sativum HOM05D007793 ORTHO05D000636 6.4e-08 62.0 91 38.5
EL10Ac8g18700 Beta vulgaris HOM05D000173 ORTHO05D008065 5.5e-07 58.9 73 41.1
SEGI_39783 Sequoiadendron giganteum HOM05D000173 ORTHO05D008065 5.5e-07 58.9 80 37.5
Os01g0269900 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D008065 7.1e-07 58.5 60 40.0
SGA_v2.0_scaffold61G21245 Striga asiatica HOM05D000036 ORTHO05D010104 2.7e-06 56.6 91 29.7
VMungo0647G1311 Vigna mungo HOM05D007793 ORTHO05D010104 3.5e-06 56.2 103 34.0
Sc18g0000440 Simmondsia chinensis HOM05D000173 ORTHO05D008065 4.6e-06 55.8 82 43.9
Hund09272 Selenicereus undatus HOM05D000173 ORTHO05D008065 6.0e-06 55.5 53 52.8


User provided reference genes

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