Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 7.2e-92 340.5 166 100.0
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 3.7e-80 301.6 166 89.2
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 9.8e-73 276.9 166 84.3
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 4.9e-72 274.6 166 77.7
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 2.7e-70 268.9 166 75.9
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 7.8e-70 267.3 166 75.3
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 2.3e-69 265.8 166 75.9
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 5.6e-68 261.2 167 76.0
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 1.2e-65 253.4 163 74.2
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 5.8e-65 251.1 166 74.1
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 1.2e-62 243.4 166 71.7
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 3.0e-61 238.8 133 88.0
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 3.3e-60 235.3 197 62.4
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 5.6e-60 234.6 165 66.7
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 7.3e-60 234.2 167 68.3
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 1.2e-59 233.4 170 67.1
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 3.6e-59 231.9 166 66.3
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 4.7e-59 231.5 170 65.3
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 8.1e-59 230.7 166 68.1
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 3.1e-58 228.8 170 65.9
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 3.1e-58 228.8 164 67.7
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 1.5e-57 226.5 169 65.7
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 7.6e-57 224.2 167 67.1
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 1.7e-56 223.0 166 66.3
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 2.2e-56 222.6 167 65.3
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 6.4e-56 221.1 167 66.5
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 8.4e-56 220.7 166 67.5
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 4.2e-55 218.4 166 63.9
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 7.1e-55 217.6 167 65.9
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 6.0e-54 214.5 168 64.3
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 1.0e-53 213.8 166 64.5
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 1.0e-53 213.8 166 62.7
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 1.7e-53 213.0 166 63.3
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 8.7e-53 210.7 169 63.3
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.5e-52 209.9 166 60.2
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 1.9e-52 209.5 168 62.5
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 1.9e-52 209.5 166 63.9
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 2.5e-52 209.1 168 61.9
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 3.3e-52 208.8 168 61.9
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 1.3e-51 206.8 166 61.4
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 2.1e-51 206.1 166 63.3
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 1.1e-50 203.8 166 60.8
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 1.1e-50 203.8 166 59.0
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 1.4e-50 203.4 171 60.2
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 5.3e-50 201.4 166 60.2
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.2e-49 200.3 166 58.4
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 1.2e-49 200.3 166 59.0
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 1.2e-49 200.3 166 59.0
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 2.6e-49 199.1 165 59.4
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 2.6e-49 199.1 167 58.7
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 1.7e-48 196.4 142 65.5
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 1.7e-48 196.4 168 56.5
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 2.9e-48 195.7 166 57.8
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 6.4e-48 194.5 138 70.3
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 2.7e-46 189.1 190 53.2
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 3.5e-46 188.7 135 68.1
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 6.0e-46 188.0 176 51.7
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 1.0e-45 187.2 165 58.2
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 2.3e-45 186.0 161 58.4
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 6.6e-45 184.5 131 66.4
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 4.8e-43 178.3 161 54.7
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 1.1e-42 177.2 133 66.9
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 1.5e-41 173.3 146 56.8
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 1.3e-40 170.2 172 52.3
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 2.9e-40 169.1 169 49.1
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 3.8e-40 168.7 141 61.7
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 5.4e-39 164.9 141 56.7
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 1.3e-37 160.2 134 59.7
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 9.6e-36 154.1 166 50.6
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 4.0e-34 148.7 138 57.2
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 2.0e-33 146.4 80 78.8
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 1.2e-30 137.1 166 45.8
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 1.8e-29 133.3 111 55.0
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 2.3e-29 132.9 94 60.6
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 2.9e-24 115.9 162 38.3
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 8.4e-24 114.4 80 61.2
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 9.3e-23 110.9 126 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 1.6e-22 110.2 188 34.6
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 1.2e-17 94.0 86 57.0
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 9.4e-15 84.3 86 54.7
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 6.1e-06 55.1 142 30.3


User provided reference genes

Program Settings