Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 4736.8 2392 100.0
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 4343.9 2395 91.1
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 4329.6 2394 90.7
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 3934.0 2367 83.0
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 3933.3 2399 82.4
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 3923.6 2394 81.9
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 3845.0 2400 80.5
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 3783.4 2405 78.9
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 3689.4 2414 76.4
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 3682.9 2451 75.6
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 3246.8 1826 89.2
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2949.8 2439 61.5
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2924.8 2456 61.4
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2919.4 2426 61.6
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2865.9 2440 60.7
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2843.1 2418 59.3
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2835.4 2444 60.0
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2832.0 2411 60.2
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2820.8 2426 60.2
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2817.3 2418 59.8
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2796.1 2421 58.5
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2781.5 2432 59.0
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2778.8 2459 57.7
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2774.6 2459 57.5
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2773.4 2459 57.6
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2767.3 2409 59.6
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2762.6 2441 58.7
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2761.1 2445 59.0
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2756.9 2459 57.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2747.6 2431 58.7
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2744.1 2440 58.3
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2738.4 2429 58.1
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2731.4 2446 58.4
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2714.5 2430 57.8
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2701.4 2433 57.5
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2692.9 2429 57.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2692.1 2429 57.3
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2678.3 2443 57.0
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2672.9 2427 57.2
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2662.9 2475 56.8
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2618.6 2453 55.5
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2616.3 2449 55.4
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2612.4 2358 57.1
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2583.5 2411 56.2
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2550.4 2434 54.8
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2549.6 2432 54.3
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2506.5 2420 54.3
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2485.7 2424 54.1
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2484.9 2101 61.2
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2481.4 2384 54.9
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2473.7 2424 54.0
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2473.0 2453 54.5
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2464.5 2432 53.0
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2463.3 2431 54.1
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 2448.7 1558 79.3
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2444.1 2439 52.8
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2444.1 2419 53.1
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2433.3 2434 52.9
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2417.5 2434 52.5
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2416.7 2450 52.7
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2416.7 2420 52.3
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2404.8 2414 52.2
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2396.3 2424 52.5
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2395.9 2425 51.9
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2393.2 2425 52.3
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2392.5 2391 52.9
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2384.0 2421 51.1
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2374.4 2421 51.8
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2370.9 2436 52.2
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2370.1 2447 51.6
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2365.1 2409 52.3
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2358.9 2435 51.8
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2355.1 2421 51.8
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2354.7 2423 51.6
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2350.9 2436 52.0
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2342.8 2435 51.1
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2342.0 2427 51.3
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2340.1 2424 51.7
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2335.1 2450 51.0
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2330.4 2437 51.7
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2328.5 2448 51.1
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2316.2 2450 51.9
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2298.9 2423 51.2
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2297.3 2074 57.9
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2293.1 2074 57.9
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2291.9 2428 50.5
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2283.8 2385 51.4
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2258.4 2424 49.5
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2248.4 2414 51.1
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2045.4 2251 49.3
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2027.3 2393 46.4
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1982.2 2418 46.3
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1882.1 2496 43.5
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1718.0 2329 43.1
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1711.0 1641 54.8
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1706.4 1452 59.6
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1689.5 1452 59.4
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1594.7 1381 58.9
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1444.5 1461 52.2
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1385.9 1100 63.3
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1325.8 1383 50.8
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1317.0 885 75.1
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1250.3 1424 48.0
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1226.1 849 75.4
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1223.0 1511 45.2
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1177.9 1164 53.7
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1143.6 1043 55.6
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 1.9e-286 990.7 1005 52.9
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 7.3e-286 988.8 1388 42.0
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 3.3e-278 963.4 1035 49.8
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.2e-274 950.7 2544 28.8
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.6e-253 881.3 2102 30.5
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.5e-246 857.4 2125 30.0
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 9.7e-238 828.9 1497 36.7
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 4.2e-209 733.8 799 48.7
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 2.3e-199 701.4 772 47.2
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 5.2e-199 700.3 2379 25.8
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.1e-180 639.4 791 43.2
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 3.9e-146 524.6 575 48.0
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 5.5e-132 477.6 267 89.9
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.9e-116 426.0 317 64.7
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.3e-106 392.5 463 46.4
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 7.0e-103 380.9 478 44.4
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 4.1e-95 355.1 403 49.4
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.4e-90 340.1 340 50.6
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 4.0e-90 338.6 314 61.8
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 8.9e-82 310.8 318 53.5
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 3.2e-79 302.4 430 39.3
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.4e-71 276.9 277 59.2
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 3.5e-70 272.3 150 92.0
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.0e-69 270.8 339 41.6
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 6.2e-67 261.5 392 39.0
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.1e-66 260.8 213 57.7
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 2.9e-64 252.7 435 36.1
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 8.3e-64 251.1 152 83.6
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.5e-60 239.6 482 32.8
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 9.5e-60 237.7 124 91.9
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.0e-53 217.6 380 37.4
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 4.7e-51 208.8 124 80.6
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-49 203.0 184 58.7
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-49 203.0 268 45.9
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 2.4e-47 196.4 122 78.7
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 1.2e-46 194.1 135 77.8
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.7e-45 190.3 110 89.1
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 4.4e-41 175.6 123 67.5
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 2.2e-40 173.3 788 23.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.1e-39 171.0 1133 21.4
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.4e-39 170.6 140 64.3
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 1.6e-38 167.2 117 68.4
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 1.1e-36 161.0 187 49.7
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 2.9e-32 146.4 139 56.1
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 8.4e-32 144.8 100 68.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 7.1e-31 141.7 83 88.0
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.2e-30 141.0 138 55.1
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 1.8e-29 137.1 77 84.4
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 2.8e-27 129.8 312 30.8
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 8.4e-24 118.2 215 34.0
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 8.4e-24 118.2 288 27.8
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 4.3e-20 105.9 51 94.1
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 4.3e-20 105.9 51 94.1
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 4.3e-20 105.9 51 94.1
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 6.1e-14 85.5 49 81.6
Psat3g007440 Pisum sativum HOM05D000832 ORTHO05D000900 1.5e-12 80.9 40 90.0
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 4.3e-12 79.3 103 40.8
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 9.0e-10 71.6 96 42.7
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 1.2e-09 71.2 38 86.8
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-09 70.1 95 40.0
Psat0ss3938g0040 Pisum sativum HOM05D001673 ORTHO05D000895 2.6e-09 70.1 39 84.6
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.4e-09 69.7 180 30.0
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 8.5e-08 65.1 42 71.4
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.6e-06 60.8 39 74.4
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 6.1e-06 58.9 114 37.7


User provided reference genes

Program Settings