Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 3.1e-47 191.4 96 100.0
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 2.6e-41 171.8 96 91.7
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 4.4e-41 171.0 96 88.5
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 2.9e-37 158.3 96 84.4
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.2e-35 152.9 89 85.4
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.1e-35 152.1 89 84.3
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.1e-35 152.1 93 80.6
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 2.1e-35 152.1 98 81.6
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 3.6e-35 151.4 96 82.3
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 8.0e-35 150.2 94 83.0
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 8.0e-35 150.2 89 83.1
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 8.0e-35 150.2 88 84.1
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 1.0e-34 149.8 90 82.2
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.4e-34 149.4 93 79.6
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.4e-34 149.4 86 84.9
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.4e-34 149.4 89 83.1
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.8e-34 149.1 93 77.4
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 2.3e-34 148.7 88 84.1
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.3e-34 148.7 95 76.8
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 2.3e-34 148.7 89 83.1
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 3.1e-34 148.3 96 78.1
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 3.1e-34 148.3 90 82.2
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 3.1e-34 148.3 94 83.0
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 3.1e-34 148.3 94 83.0
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.2e-34 147.5 90 84.4
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 5.2e-34 147.5 90 82.2
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 6.8e-34 147.1 88 83.0
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 6.8e-34 147.1 88 79.5
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 8.9e-34 146.7 89 83.1
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.2e-33 146.4 86 82.6
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 1.5e-33 146.0 88 80.7
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.0e-33 145.6 94 80.9
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.0e-33 145.6 94 76.6
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 2.0e-33 145.6 85 84.7
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.4e-33 144.8 83 86.7
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.4e-33 144.8 88 83.0
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 3.4e-33 144.8 88 83.0
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 3.4e-33 144.8 85 82.4
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 4.4e-33 144.4 90 81.1
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 7.5e-33 143.7 90 80.0
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 7.5e-33 143.7 90 80.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.7e-32 142.5 89 82.0
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.2e-32 142.1 89 79.8
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.2e-32 142.1 86 81.4
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 4.9e-32 141.0 95 72.6
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 4.9e-32 141.0 88 78.4
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 4.9e-32 141.0 90 78.9
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 8.3e-32 140.2 95 73.7
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.1e-31 139.8 88 78.4
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.1e-31 139.8 86 81.4
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.1e-31 139.8 88 79.5
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.4e-31 139.4 88 78.4
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.9e-31 139.0 90 74.4
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 3.2e-31 138.3 86 80.2
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 5.4e-31 137.5 89 75.3
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.2e-30 136.3 83 80.7
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.6e-30 136.0 81 85.2
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.6e-30 136.0 81 86.4
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 2.0e-30 135.6 91 73.6
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.0e-30 135.6 89 76.4
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.0e-30 135.6 81 85.2
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.0e-30 135.6 81 85.2
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.0e-30 135.6 81 85.2
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.7e-30 135.2 84 77.4
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.7e-30 135.2 86 79.1
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.7e-30 135.2 86 79.1
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 3.5e-30 134.8 87 74.7
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 4.6e-30 134.4 84 78.6
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 4.6e-30 134.4 86 77.9
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 6.0e-30 134.0 86 72.1
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 6.0e-30 134.0 90 74.4
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 6.0e-30 134.0 85 83.5
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 7.8e-30 133.7 88 75.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 7.8e-30 133.7 89 71.9
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.0e-29 133.3 75 89.3
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.0e-29 133.3 88 76.1
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.0e-29 133.3 95 70.5
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.3e-29 132.9 89 71.9
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.3e-29 132.9 78 83.3
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.7e-29 132.5 89 69.7
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.7e-29 132.5 83 78.3
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.3e-29 132.1 81 85.2
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 3.0e-29 131.7 89 73.0
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.0e-29 131.0 91 70.3
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 5.0e-29 131.0 88 72.7
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 5.0e-29 131.0 88 73.9
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 5.0e-29 131.0 88 73.9
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 5.0e-29 131.0 83 78.3
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 5.0e-29 131.0 98 72.4
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 5.0e-29 131.0 91 74.7
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 8.6e-29 130.2 73 90.4
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 8.6e-29 130.2 81 84.0
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.1e-28 129.8 80 78.8
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.1e-28 129.8 85 72.9
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 1.1e-28 129.8 89 74.2
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 1.5e-28 129.4 88 72.7
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.5e-28 129.4 84 72.6
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.5e-28 128.6 80 78.8
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.5e-28 128.6 80 78.8
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.5e-28 128.6 80 78.8
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.5e-28 128.6 80 78.8
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 2.5e-28 128.6 80 78.8
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 3.3e-28 128.3 81 79.0
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.3e-28 128.3 80 80.0
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 4.3e-28 127.9 90 70.0
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 4.3e-28 127.9 90 70.0
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 4.3e-28 127.9 90 70.0
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 4.3e-28 127.9 90 70.0
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 5.6e-28 127.5 85 80.0
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 7.3e-28 127.1 84 73.8
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 9.5e-28 126.7 87 70.1
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 9.5e-28 126.7 87 70.1
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 9.5e-28 126.7 81 77.8
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.2e-27 126.3 89 69.7
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.6e-27 125.9 81 80.2
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.6e-27 125.9 80 81.2
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.1e-27 125.6 88 73.9
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.8e-27 125.2 88 73.9
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 3.6e-27 124.8 80 75.0
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.6e-27 124.8 76 81.6
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 3.6e-27 124.8 78 82.1
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 3.6e-27 124.8 86 74.4
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 77.8
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 5.2e-26 120.9 83 72.3
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 5.2e-26 120.9 83 72.3
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 5.2e-26 120.9 83 72.3
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 2.6e-25 118.6 80 80.0
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.9e-23 112.5 75 76.0
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.2e-22 109.8 83 62.7
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.5e-22 108.2 83 69.9
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 4.3e-20 101.3 78 65.4
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.6e-19 99.4 85 58.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.1e-19 99.0 73 71.2
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.8e-18 95.9 56 80.4
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.8e-18 95.9 88 58.0
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 4.4e-17 91.3 77 61.0
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 5.8e-17 90.9 87 57.5
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 4.9e-16 87.8 78 61.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.9e-16 87.8 64 65.6
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.2e-14 83.2 56 71.4
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.2e-14 83.2 56 71.4
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.6e-13 77.4 50 72.0
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.9e-12 75.9 51 70.6
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 2.5e-12 75.5 83 47.0
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.1e-10 70.1 40 85.0


User provided reference genes

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