Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33621 Trifolium pratense HOM05D007331 ORTHO05D009273 8.1e-94 347.1 174 100.0
Medtr3g491820 Medicago truncatula HOM05D007331 ORTHO05D009273 4.1e-69 265.0 163 82.8
Ca_16722_v3 Cicer arietinum L. HOM05D007331 ORTHO05D009273 4.2e-66 255.0 166 78.3
Glyma.06G130800 Glycine max HOM05D007331 ORTHO05D009273 2.5e-58 229.2 166 69.3
Lalb_Chr08g0240101 Lupinus albus HOM05D007331 ORTHO05D009273 9.4e-58 227.3 164 67.1
Lj1g0000536 Lotus japonicus HOM05D007331 ORTHO05D009273 2.7e-57 225.7 160 70.6
Phvul.009G050900 Phaseolus vulgaris HOM05D007331 ORTHO05D009273 7.9e-57 224.2 166 69.9
Glyma.04G234000 Glycine max HOM05D007331 ORTHO05D009273 8.8e-56 220.7 166 67.5
Psat5g075920 Pisum sativum HOM05D007331 ORTHO05D009273 9.7e-55 217.2 132 79.5
GSVIVG01010322001 Vitis vinifera HOM05D007331 ORTHO05D009273 1.9e-50 203.0 166 61.4
Cfa016463 Carpinus fangiana HOM05D007331 ORTHO05D009273 2.5e-50 202.6 160 62.5
CiPaw.05G198500 Carya illinoinensis HOM05D007331 ORTHO05D009273 9.4e-50 200.7 167 61.1
Haze_00231 Corylus avellana HOM05D007331 ORTHO05D009273 6.1e-49 198.0 196 54.1
CsaV3_3G019730 Cucumis sativus L. HOM05D007331 ORTHO05D009273 8.0e-49 197.6 169 57.4
arahy.Tifrunner.gnm1.ann1.E13FL8 Arachis hypogaea HOM05D007331 ORTHO05D009273 1.8e-48 196.4 166 59.6
MELO3C019371.2 Cucumis melo HOM05D000442 ORTHO05D007032 2.3e-48 196.1 152 61.8
QL09p007955 Quercus lobata HOM05D007331 ORTHO05D009273 6.7e-48 194.5 160 60.6
THA.LOC104798905 Tarenaya hassleriana HOM05D007331 ORTHO05D009273 8.8e-48 194.1 159 61.0
Gohir.A12G248800 Gossypium hirsutum HOM05D007331 ORTHO05D009273 1.5e-47 193.4 161 59.6
ClCG05G009050 Citrullus lanatus HOM05D007331 ORTHO05D009273 2.0e-47 193.0 169 57.4
COL.COLO4_16795 Corchorus olitorius HOM05D007331 ORTHO05D009273 5.7e-47 191.4 171 58.5
arahy.Tifrunner.gnm1.ann1.US9W38 Arachis hypogaea HOM05D007331 ORTHO05D009273 1.3e-46 190.3 185 54.1
Dinv35349 Davidia involucrata HOM05D007331 ORTHO05D009273 2.2e-46 189.5 151 63.6
Sed0023714 Sechium edule HOM05D007331 ORTHO05D009273 2.2e-46 189.5 161 60.9
CANSAT21G1988 Cannabis sativa HOM05D007331 ORTHO05D009273 2.8e-46 189.1 168 59.5
Eucgr.K00396 Eucalyptus grandis HOM05D007331 ORTHO05D009273 3.7e-46 188.7 173 58.4
Gorai.008G267700 Gossypium raimondii HOM05D007331 ORTHO05D009273 8.2e-46 187.6 161 57.8
MD01G1223100 Malus domestica HOM05D007331 ORTHO05D009273 1.1e-45 187.2 159 59.7
RcHm_v2.0_Chr1g0381631 Rosa chinensis HOM05D007331 ORTHO05D009273 1.4e-45 186.8 160 61.9
Atru.chr12.2246 Acer truncatum HOM05D007331 ORTHO05D009273 2.4e-45 186.0 166 59.0
BraA06t26434Z Brassica rapa HOM05D007331 ORTHO05D009273 5.3e-45 184.9 164 57.9
Migut.F00197 Erythranthe guttata HOM05D007331 ORTHO05D009273 7.0e-45 184.5 157 58.6
FvH4_7g32020 Fragaria vesca HOM05D007331 ORTHO05D009273 9.1e-45 184.1 164 58.5
PSO063G7177 Papaver somniferum HOM05D007331 ORTHO05D009273 9.1e-45 184.1 173 58.4
FAN01G2673 Fragaria x ananassa HOM05D007331 ORTHO05D009273 1.2e-44 183.7 165 58.8
PSO170G4979 Papaver somniferum HOM05D007331 ORTHO05D009273 1.2e-44 183.7 173 58.4
CDE04G0075 Ceratophyllum demersum HOM05D007331 ORTHO05D009273 1.6e-44 183.3 168 58.3
Duzib068G0233 Durio zibethinus HOM05D007331 ORTHO05D009273 2.0e-44 183.0 166 58.4
Manes.05G191300 Manihot esculenta HOM05D007331 ORTHO05D009273 2.0e-44 183.0 148 60.1
Prupe.2G313600 Prunus persica HOM05D007331 ORTHO05D009273 2.6e-44 182.6 145 61.4
BcaNung01223 Brassica carinata HOM05D007331 ORTHO05D009273 3.5e-44 182.2 147 59.9
A06p35140 Brassica napus HOM05D007331 ORTHO05D009273 4.5e-44 181.8 163 57.7
C07p43430 Brassica napus HOM05D007331 ORTHO05D009273 5.9e-44 181.4 156 58.3
BolC7t44869H Brassica oleracea HOM05D007331 ORTHO05D009273 5.9e-44 181.4 156 58.3
Nitab4.5_0005491g0010 Nicotiana tabacum HOM05D007331 ORTHO05D009273 7.7e-44 181.0 161 59.6
Sp2g23030 Schrenkiella parvula HOM05D007331 ORTHO05D009273 1.3e-43 180.3 161 56.5
Ciclev10022582m.g Citrus clementina HOM05D007331 ORTHO05D009273 2.9e-43 179.1 166 54.8
PGR142G4299 Punica granatum HOM05D007331 ORTHO05D009273 6.5e-43 177.9 121 69.4
MSTRG.8644 Avicennia marina HOM05D007331 ORTHO05D009273 8.5e-43 177.6 150 59.3
CAN.G481.32 Capsicum annuum HOM05D007331 ORTHO05D009273 1.9e-42 176.4 165 57.6
PGSC0003DMG400018546 Solanum tuberosum HOM05D007331 ORTHO05D009273 1.9e-42 176.4 161 57.8
Thhalv10005048m.g Eutrema salsugineum HOM05D007331 ORTHO05D009273 2.5e-42 176.0 161 57.1
Potri.015G010700 Populus trichocarpa HOM05D007331 ORTHO05D009273 2.5e-42 176.0 163 56.4
TWI39G0006 Tripterygium wilfordii HOM05D007331 ORTHO05D009273 2.5e-42 176.0 166 58.4
Sopen03g022780 Solanum pennellii HOM05D007331 ORTHO05D009273 3.2e-42 175.6 165 57.6
AL6G35810 Arabidopsis lyrata HOM05D007331 ORTHO05D009273 4.2e-42 175.3 163 56.4
Solyc03g082970.4 Solanum lycopersicum HOM05D007331 ORTHO05D009273 4.2e-42 175.3 161 57.8
Carub.0006s2210 Capsella rubella HOM05D007331 ORTHO05D009273 5.5e-42 174.9 161 55.9
AT5G24314 Arabidopsis thaliana HOM05D007331 ORTHO05D009273 9.4e-42 174.1 163 55.8
CARHR189150 Cardamine hirsuta HOM05D007331 ORTHO05D009273 9.4e-42 174.1 160 55.0
ATR0730G104 Amborella trichopoda HOM05D007331 ORTHO05D009273 2.1e-41 172.9 174 54.6
Cc02_g01360 Coffea canephora HOM05D007331 ORTHO05D009273 2.1e-41 172.9 151 60.9
Sabra15G0008800 Salix brachista HOM05D007331 ORTHO05D009273 3.6e-41 172.2 166 56.0
VMungo1309G2222 Vigna mungo HOM05D007331 ORTHO05D009273 6.1e-41 171.4 145 59.3
DCAR_014548 Daucus carota HOM05D007331 ORTHO05D009273 1.0e-40 170.6 162 56.8
Thecc.03G201300 Theobroma cacao HOM05D007331 ORTHO05D009273 6.7e-40 167.9 170 55.3
Cpa.g.sc3.102 Carica papaya HOM05D007331 ORTHO05D009273 1.5e-39 166.8 110 72.7
AUR62006072 Chenopodium quinoa HOM05D007331 ORTHO05D009273 5.7e-39 164.9 163 53.4
SGA_v2.0_scaffold192G40527 Striga asiatica HOM05D007331 ORTHO05D009273 3.7e-38 162.2 162 51.9
Aqoxy5G04308 Aquilegia oxysepala HOM05D007331 ORTHO05D009273 1.4e-37 160.2 141 57.4
Peaxi162Scf00740g00023 Petunia axillaris HOM05D007331 ORTHO05D009273 7.0e-37 157.9 107 72.0
FAN06G3260 Fragaria x ananassa HOM05D007331 ORTHO05D009273 9.1e-37 157.5 103 70.9
Nn5g27567 Nelumbo nucifera HOM05D007331 ORTHO05D009273 1.2e-36 157.1 110 70.9
CSS0016118 Camellia sinensis var. sinensis HOM05D007331 ORTHO05D009273 2.7e-36 156.0 107 71.0
FAN10G2274 Fragaria x ananassa HOM05D007331 ORTHO05D009273 1.0e-35 154.1 98 71.4
FAN10G3896 Fragaria x ananassa HOM05D007331 ORTHO05D009273 1.0e-35 154.1 98 71.4
HPP92_020186 Vanilla planifolia HOM05D007331 ORTHO05D009273 1.3e-35 153.7 140 57.1
Rhsim03G0210700 Rhododendron simsii HOM05D007331 ORTHO05D009273 3.8e-35 152.1 152 52.6
Aa31LG11G3570 Aethionema arabicum HOM05D007331 ORTHO05D009273 5.5e-34 148.3 106 64.2
unitig_92.g28248 Utricularia gibba HOM05D007331 ORTHO05D009273 9.4e-34 147.5 170 48.2
Nitab4.5_0000548g0030 Nicotiana tabacum HOM05D007331 ORTHO05D008325 2.7e-33 146.0 139 57.6
Actinidia34232 Actinidia chinensis HOM05D007331 ORTHO05D009273 8.0e-33 144.4 100 72.0
COL.COLO4_06879 Corchorus olitorius HOM05D007331 ORTHO05D009273 8.0e-33 144.4 103 69.9
HanXRQChr07g0206431 Helianthus annuus HOM05D007331 ORTHO05D009273 1.0e-32 144.1 157 51.6
Os01g0705300 Oryza sativa ssp. japonica HOM05D007331 ORTHO05D009273 3.0e-32 142.5 119 56.3
AUR62035555 Chenopodium quinoa HOM05D007331 ORTHO05D009273 8.8e-32 141.0 108 63.0
Zm00001eb155420 Zea mays HOM05D007331 ORTHO05D009273 3.4e-31 139.0 118 55.1
Zm00001eb361120 Zea mays HOM05D007331 ORTHO05D009273 3.4e-31 139.0 118 54.2
Lsat_1_v5_gn_2_136240 Lactuca sativa HOM05D007331 ORTHO05D009273 4.8e-30 135.2 158 48.7
Ah.07g205440 Amaranthus hybridus HOM05D007331 ORTHO05D009273 8.3e-30 134.4 110 60.9
EL10Ac3g05257 Beta vulgaris HOM05D007331 ORTHO05D009273 1.8e-29 133.3 167 47.9
ECA238G3436 Erigeron canadensis HOM05D007331 ORTHO05D009273 1.8e-29 133.3 123 55.3
Hund11645 Selenicereus undatus HOM05D007331 ORTHO05D009273 3.1e-29 132.5 160 47.5
MBI06_g33738_MAGBIO Magnolia biondii HOM05D007331 ORTHO05D009273 7.0e-29 131.3 98 70.4
Oeu023663.2 Olea europaea HOM05D007331 ORTHO05D009273 1.7e-27 126.7 111 61.3
vmacro06396 Vaccinium macrocarpon HOM05D007331 ORTHO05D009273 2.9e-27 125.9 101 62.4
Lj3P902T29 Lonicera japonica HOM05D007331 ORTHO05D009273 2.6e-23 112.8 85 63.5
Thecc.05G118900 Theobroma cacao HOM05D007331 ORTHO05D009273 1.4e-13 80.5 96 49.0
arahy.Tifrunner.gnm1.ann1.2NJ5KY Arachis hypogaea HOM05D007331 ORTHO05D009273 7.3e-10 68.2 68 51.5
Actinidia08666 Actinidia chinensis HOM05D007331 ORTHO05D009273 9.5e-10 67.8 86 45.3
AagrBONN_evm.TU.Sc2ySwM_368.2672 Anthoceros agrestis HOM05D007331 ORTHO05D009273 3.1e-08 62.8 102 36.3
A02p40720 Brassica napus HOM05D007331 ORTHO05D009273 1.7e-06 57.0 41 65.9
BraA02t09018Z Brassica rapa HOM05D007331 ORTHO05D009273 1.7e-06 57.0 41 65.9


User provided reference genes

Program Settings