Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 3.1e-213 745.0 404 100.0
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 2.6e-188 662.1 404 89.4
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.4e-173 613.2 404 83.4
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 3.1e-173 612.1 404 82.7
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 3.5e-172 608.6 404 82.9
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 7.7e-172 607.4 404 82.9
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 2.3e-171 605.9 404 82.7
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.4e-168 596.7 406 82.8
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 2.0e-164 582.8 406 80.8
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 1.0e-163 580.5 406 80.5
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 1.3e-163 580.1 406 80.5
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-162 576.6 406 79.8
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 2.5e-162 575.9 424 77.1
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 8.3e-158 560.8 406 78.8
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.8e-157 559.7 404 78.5
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 4.7e-153 545.0 404 77.0
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.8e-152 543.1 404 77.5
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 6.8e-152 541.2 404 74.0
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 4.9e-150 535.0 404 77.2
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 7.3e-146 521.2 402 74.4
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 6.0e-140 501.5 410 70.7
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.9e-138 496.5 329 80.5
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 2.0e-135 486.5 410 70.0
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.2e-132 477.2 410 68.5
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 2.1e-132 476.5 424 66.7
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.3e-131 473.0 404 67.8
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 6.6e-131 471.5 425 68.0
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.1e-130 470.7 420 67.4
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 1.5e-130 470.3 411 69.1
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 6.2e-129 464.9 403 67.7
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.4e-128 463.0 411 68.1
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 2.6e-127 459.5 316 81.0
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 1.3e-126 457.2 409 68.2
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.2e-126 456.4 348 76.7
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.4e-125 453.8 417 67.6
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 2.4e-125 453.0 362 71.3
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 5.4e-125 451.8 428 66.1
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.6e-124 450.3 411 68.4
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 2.7e-124 449.5 415 66.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.3e-123 447.2 417 65.7
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 3.9e-123 445.7 423 64.8
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 8.7e-123 444.5 407 66.3
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 4.3e-122 442.2 410 65.4
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 2.8e-121 439.5 414 64.3
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.4e-120 436.4 410 65.1
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 4.0e-120 435.6 410 62.2
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 2.0e-119 433.3 410 64.4
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 2.6e-119 433.0 409 64.8
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.5e-119 432.2 435 62.3
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.4e-117 427.2 409 66.0
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 1.0e-115 421.0 403 64.0
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.0e-115 421.0 418 63.9
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 3.9e-115 419.1 411 64.2
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.1e-114 417.5 407 64.1
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 7.4e-114 414.8 411 63.3
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 9.6e-114 414.5 355 68.2
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.3e-113 414.1 409 63.8
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 2.1e-113 413.3 416 63.2
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 2.8e-113 412.9 409 63.1
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.8e-113 412.1 409 63.3
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.2e-113 411.8 409 63.1
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 6.2e-113 411.8 433 59.8
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 8.1e-113 411.4 441 60.1
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.1e-112 411.0 411 62.0
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 1.1e-112 411.0 355 68.2
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.4e-112 410.6 408 62.5
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 2.4e-112 409.8 407 61.9
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 5.3e-112 408.7 355 67.9
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 3.4e-111 406.0 411 61.3
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.4e-111 406.0 408 61.5
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.5e-111 405.6 407 61.4
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.6e-111 404.8 410 63.4
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-110 404.1 407 61.4
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.3e-110 404.1 408 61.3
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.7e-110 403.7 423 60.0
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.2e-110 403.3 408 61.8
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.4e-109 400.6 407 63.1
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.4e-109 400.6 409 61.9
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.4e-109 400.6 409 62.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 7.1e-109 398.3 436 60.6
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 7.1e-109 398.3 421 59.4
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 7.1e-109 398.3 407 61.7
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 4.6e-108 395.6 429 59.0
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.9e-108 394.8 407 60.9
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.0e-107 394.4 414 60.6
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-107 394.4 406 61.8
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-107 394.4 403 60.5
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 6.7e-107 391.7 414 60.4
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 8.7e-107 391.3 411 60.8
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.1e-106 391.0 413 60.3
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.9e-106 390.2 409 60.6
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.5e-106 389.8 342 69.0
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 4.3e-106 389.0 441 58.3
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.3e-106 389.0 413 59.3
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.3e-106 389.0 410 61.0
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.8e-105 386.3 407 59.2
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 6.2e-105 385.2 429 58.0
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.2e-105 385.2 411 60.3
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 6.2e-105 385.2 410 61.2
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.5e-103 380.6 442 57.2
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.0e-102 377.9 424 57.5
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.3e-102 377.5 410 60.5
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.9e-102 376.3 411 58.9
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 3.8e-102 375.9 438 56.6
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 4.9e-102 375.6 436 56.0
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 8.4e-102 374.8 413 56.7
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.4e-101 374.0 427 57.6
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.4e-101 374.0 427 57.6
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 2.5e-101 373.2 341 63.3
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 6.7e-99 365.2 414 58.0
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 5.7e-98 362.1 434 55.3
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 7.4e-98 361.7 411 58.2
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.7e-97 359.4 338 65.7
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 6.3e-97 358.6 404 58.4
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.6e-92 344.0 410 56.1
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 2.1e-92 343.6 341 63.9
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 6.7e-91 338.6 410 55.1
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.1e-90 337.8 445 52.8
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 4.1e-88 329.3 414 53.1
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 5.9e-87 325.5 328 60.7
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.2e-81 307.0 352 59.7
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.0e-78 298.1 408 48.0
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 4.2e-77 292.7 347 53.6
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 9.1e-72 275.0 422 46.4
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.9e-71 272.3 403 50.1
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 2.9e-70 270.0 347 52.4
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 7.2e-69 265.4 337 49.9
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 5.7e-66 255.8 395 48.1
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.7e-65 254.2 395 48.1
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.9e-63 245.7 411 43.1
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.2e-61 240.0 246 63.0
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 8.6e-54 215.3 287 52.6
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 3.0e-51 206.8 211 60.2
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.4e-48 197.2 220 59.1
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 5.4e-48 196.1 286 49.3
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 9.2e-48 195.3 251 50.2
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.7e-47 193.7 194 56.7
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 6.1e-44 182.6 225 53.8
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.8e-43 181.0 268 51.9
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.8e-43 181.0 268 51.9
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.6e-42 177.2 347 42.1
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 3.4e-42 176.8 286 40.9
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 3.1e-35 153.7 379 37.7
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.3e-33 148.3 276 36.2
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 3.2e-32 143.7 206 46.6
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 6.6e-30 136.0 109 68.8
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 1.6e-28 131.3 106 67.9
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.6e-28 130.2 348 38.2
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 9.9e-26 122.1 150 55.3
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 4.1e-24 116.7 230 33.5
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.6e-23 114.8 217 42.9
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 3.9e-14 83.6 117 53.8
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.4e-10 70.5 210 26.2
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 7.8e-07 59.3 123 37.4
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 8.7e-06 55.8 63 49.2


User provided reference genes

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