Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 6.2e-188 660.6 324 100.0
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.9e-152 542.7 327 85.0
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 6.0e-151 537.7 326 85.3
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 6.5e-145 517.7 368 74.7
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 4.8e-132 474.9 341 72.7
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 6.9e-131 471.1 322 75.8
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 7.7e-130 467.6 325 75.7
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 8.5e-129 464.2 320 74.4
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.9e-128 463.0 323 74.9
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 4.7e-127 458.4 303 76.6
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 7.0e-123 444.5 358 67.3
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 1.1e-120 437.2 323 68.4
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 1.4e-120 436.8 295 73.2
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.9e-118 428.7 290 73.4
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.5e-117 426.8 287 73.5
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 2.6e-117 426.0 292 71.9
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 5.7e-117 424.9 284 73.6
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 3.1e-115 419.1 291 71.8
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 4.1e-115 418.7 293 70.6
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 5.3e-115 418.3 288 72.9
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 3.5e-114 415.6 279 73.5
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 4.5e-114 415.2 288 71.9
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 2.2e-113 412.9 325 64.6
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 2.2e-113 412.9 256 79.3
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 2.2e-113 412.9 268 74.3
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 2.9e-113 412.5 278 72.3
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 2.9e-113 412.5 271 73.4
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.5e-112 410.2 307 66.8
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 1.5e-112 410.2 293 70.0
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 1.9e-112 409.8 280 71.8
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 1.6e-111 406.8 288 69.4
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 2.1e-111 406.4 309 66.7
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.4e-110 403.7 330 63.9
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.4e-110 403.7 273 72.9
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 2.3e-110 402.9 290 70.0
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 3.0e-110 402.5 276 72.5
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 4.0e-110 402.1 288 68.4
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.0e-110 402.1 252 77.0
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 4.0e-110 402.1 284 70.4
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 5.2e-110 401.7 307 65.5
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 8.8e-110 401.0 273 72.5
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.2e-109 400.6 289 69.6
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.0e-109 399.8 307 65.8
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 2.0e-109 399.8 286 69.2
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 3.4e-109 399.1 291 69.1
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 4.4e-109 398.7 276 72.1
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 9.7e-109 397.5 284 68.7
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 1.3e-108 397.1 272 71.0
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 3.7e-108 395.6 261 73.9
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 7.0e-107 391.3 294 66.7
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 7.0e-107 391.3 287 67.9
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.2e-106 390.6 279 70.6
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 3.5e-106 389.0 275 69.8
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 4.5e-106 388.7 272 69.5
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 5.9e-106 388.3 274 68.6
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 8.5e-105 384.4 269 68.0
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.5e-104 383.6 288 67.4
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 2.5e-104 382.9 286 66.8
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 3.2e-104 382.5 237 78.1
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 4.2e-104 382.1 333 61.6
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.6e-103 380.2 289 66.1
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.6e-103 380.2 282 69.5
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 8.0e-103 377.9 295 65.1
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 8.0e-103 377.9 260 71.2
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 1.4e-102 377.1 322 61.2
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.4e-102 377.1 258 72.1
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 1.8e-102 376.7 266 67.7
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.2e-101 374.0 292 63.7
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.2e-101 374.0 301 64.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.5e-101 373.6 285 64.2
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 2.0e-101 373.2 280 67.9
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 3.4e-101 372.5 278 64.7
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 3.4e-101 372.5 320 60.3
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 5.7e-101 371.7 279 64.5
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 7.5e-101 371.3 295 63.7
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 7.5e-101 371.3 285 64.2
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 7.5e-101 371.3 279 64.2
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 2.2e-100 369.8 273 66.3
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 1.8e-99 366.7 277 66.8
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 3.1e-99 365.9 294 62.2
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 5.4e-99 365.2 260 68.8
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.0e-98 363.2 206 85.4
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.0e-97 360.9 272 67.3
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 1.7e-97 360.1 292 62.7
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 4.7e-95 352.1 282 62.8
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 9.8e-93 344.4 377 51.2
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 8.3e-92 341.3 272 61.0
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.8e-86 323.6 217 78.8
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.1e-86 322.8 282 59.9
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 1.1e-83 314.3 279 56.3
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 1.6e-82 310.5 335 53.4
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 1.8e-78 297.0 249 57.8
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 2.2e-76 290.0 237 55.7
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.1e-74 283.5 268 49.6
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 1.0e-73 281.2 242 55.0
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.8e-70 270.4 285 52.3
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 8.9e-70 268.1 239 56.5
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 5.8e-69 265.4 197 68.5
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.5e-64 250.8 238 50.0
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 5.6e-64 248.8 234 51.7
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 3.1e-62 243.0 282 48.6
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.9e-60 236.5 204 60.3
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 3.8e-60 236.1 204 60.3
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 7.1e-59 231.9 173 67.1
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.2e-58 231.1 189 63.0
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 5.4e-51 205.7 113 83.2
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 1.5e-48 197.6 218 44.5
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 9.6e-48 194.9 193 48.2
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.3e-44 184.5 261 37.2
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 6.4e-44 182.2 119 76.5
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 2.1e-42 177.2 219 42.5
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 2.7e-26 123.6 137 48.2
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 4.6e-26 122.9 130 54.6
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.1e-25 119.4 95 64.2
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 6.7e-25 119.0 140 50.7
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.5e-24 117.1 66 84.8
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 5.7e-24 115.9 173 41.6
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 1.2e-21 108.2 126 55.6
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 6.1e-18 95.9 71 69.0
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 2.8e-15 87.0 191 31.9
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 1.3e-12 78.2 105 42.9
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 8.8e-09 65.5 133 30.8
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 3.3e-08 63.5 162 28.4
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 5.7e-08 62.8 142 29.6
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 3.7e-07 60.1 150 28.0
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.1e-06 58.5 142 29.6
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 1.4e-06 58.2 205 26.3
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 3.1e-06 57.0 166 26.5
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 3.1e-06 57.0 148 30.4
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 3.1e-06 57.0 146 29.5
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 5.3e-06 56.2 156 25.0
Duzib268G0722 Durio zibethinus HOM05D006539 ORTHO05D186223 9.1e-06 55.5 30 86.7


User provided reference genes

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