Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.6e-129 466.1 237 100.0
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 4.6e-108 394.8 240 86.2
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 2.9e-102 375.6 240 81.2
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.0e-99 367.1 241 80.1
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 5.7e-98 361.3 237 80.6
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 1.6e-97 359.8 240 79.6
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 2.1e-76 289.7 268 61.6
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.6e-71 273.5 298 55.0
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 2.7e-68 262.7 166 81.3
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 8.0e-68 261.2 163 81.6
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.8e-65 251.9 181 73.5
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 1.3e-62 243.8 166 76.5
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.9e-61 240.0 170 75.3
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 9.4e-61 237.7 173 69.4
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 2.7e-60 236.1 173 69.4
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.8e-59 233.4 171 69.0
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 2.3e-59 233.0 229 55.9
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 2.3e-59 233.0 230 56.1
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 6.3e-57 224.9 229 54.1
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 2.7e-55 219.5 212 58.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.7e-55 218.0 212 55.2
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.0e-54 217.6 169 65.1
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.0e-54 217.6 169 65.1
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-54 217.2 169 65.1
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 2.3e-54 216.5 170 63.5
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.9e-54 216.1 169 64.5
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.9e-54 216.1 169 64.5
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.2e-52 210.7 191 59.2
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.8e-51 206.8 170 61.2
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 2.3e-51 206.5 205 52.7
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.3e-51 206.5 238 50.4
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 5.2e-51 205.3 170 61.2
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 8.9e-51 204.5 166 59.0
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 8.9e-51 204.5 166 59.0
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 8.9e-51 204.5 172 60.5
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.5e-50 203.8 152 67.1
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 1.5e-50 203.8 169 59.2
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.5e-50 203.8 166 59.0
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 2.0e-50 203.4 166 58.4
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 2.0e-50 203.4 166 58.4
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 2.0e-50 203.4 166 58.4
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 2.0e-50 203.4 181 56.9
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 3.4e-50 202.6 166 59.0
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 5.7e-50 201.8 170 57.1
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.7e-50 201.8 231 49.8
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.7e-50 201.8 169 60.4
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.7e-49 200.3 234 50.0
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 2.2e-49 199.9 169 58.0
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.8e-49 199.5 169 57.4
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 2.8e-49 199.5 169 57.4
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.8e-49 199.5 179 59.2
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 4.9e-49 198.7 238 47.1
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 6.3e-49 198.4 206 53.9
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 6.3e-49 198.4 197 55.8
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 6.3e-49 198.4 157 63.7
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.1e-48 197.6 159 59.7
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.8e-48 196.8 161 61.5
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 2.4e-48 196.4 170 61.2
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 3.2e-48 196.1 236 48.3
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 4.1e-48 195.7 169 59.8
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 4.1e-48 195.7 208 51.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 7.0e-48 194.9 255 46.7
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.6e-47 193.7 169 58.0
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.0e-47 193.4 209 53.6
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 2.7e-47 193.0 256 47.3
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 3.5e-47 192.6 145 63.4
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 4.5e-47 192.2 169 58.6
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 4.5e-47 192.2 169 58.6
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.0e-46 191.0 178 55.6
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 1.0e-46 191.0 232 47.8
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.0e-46 191.0 197 53.3
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.0e-46 191.0 197 53.3
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 2.3e-46 189.9 169 54.4
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 6.6e-46 188.3 147 61.9
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.1e-45 187.6 205 52.2
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.5e-45 187.2 158 60.1
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.9e-45 186.8 231 47.2
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 3.3e-45 186.0 168 58.3
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 3.3e-45 186.0 120 72.5
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 1.2e-44 184.1 160 60.6
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 1.6e-44 183.7 169 55.6
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 8.0e-44 181.4 156 60.9
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.1e-43 179.5 158 55.7
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 6.8e-43 178.3 126 68.3
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 5.8e-42 175.3 126 67.5
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.9e-41 172.9 159 57.9
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 4.9e-41 172.2 169 50.9
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.1e-40 171.0 161 54.7
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 1.4e-40 170.6 159 57.2
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.9e-40 170.2 232 45.7
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.4e-40 169.9 127 63.8
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 4.6e-39 165.6 177 51.4
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.0e-38 164.5 160 58.8
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.5e-37 160.6 170 51.2
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 7.3e-37 158.3 147 55.1
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.7e-36 155.6 172 48.3
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.7e-36 155.6 172 48.3
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.3e-35 153.3 132 56.1
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 4.0e-35 152.5 136 55.9
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 5.2e-35 152.1 151 55.0
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 4.4e-34 149.1 146 52.1
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 4.4e-34 149.1 253 38.7
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.7e-33 147.1 102 64.7
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 4.9e-33 145.6 160 48.1
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 8.3e-33 144.8 104 64.4
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 3.2e-32 142.9 150 53.3
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 4.1e-32 142.5 197 44.7
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.7e-30 137.1 110 64.5
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 5.1e-30 135.6 227 40.5
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 4.3e-29 132.5 182 45.6
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 7.6e-26 121.7 80 65.0
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.1e-24 117.9 92 64.1
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.4e-24 116.7 128 50.8
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 5.4e-24 115.5 101 55.4
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 2.1e-23 113.6 160 45.0
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.0e-22 111.3 95 56.8
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.0e-18 97.1 103 49.5
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 2.9e-17 93.2 104 48.1
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 6.6e-14 82.0 69 53.6
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 3.3e-13 79.7 90 47.8
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 3.1e-11 73.2 46 65.2
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.5e-10 70.9 100 44.0
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 4.4e-10 69.3 119 37.0
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 7.1e-08 62.0 63 46.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 7.1e-08 62.0 63 46.0
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 9.3e-08 61.6 74 43.2
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 1.2e-07 61.2 63 46.0
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 3.5e-07 59.7 121 38.0


User provided reference genes

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