Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 4.8e-285 983.8 484 100.0
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 6.1e-232 807.4 462 85.5
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 2.0e-230 802.4 463 83.2
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 9.7e-230 800.0 463 83.6
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.2e-227 793.1 463 82.3
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 7.7e-227 790.4 461 82.6
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 3.8e-226 788.1 457 83.4
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 1.0e-218 763.5 466 79.0
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 8.0e-216 753.8 465 78.5
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 2.3e-215 752.3 466 78.1
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 4.0e-215 751.5 465 78.1
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 4.4e-214 748.0 466 76.2
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 1.0e-210 736.9 464 75.4
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 3.0e-207 725.3 463 76.0
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 9.8e-206 720.3 458 76.0
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 1.4e-204 716.5 457 75.5
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 2.3e-199 699.1 441 77.6
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 1.9e-193 679.5 458 70.5
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 1.1e-191 673.7 459 69.9
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.4e-191 673.3 459 69.7
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 6.8e-191 671.0 440 71.6
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 1.5e-190 669.8 431 73.1
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 2.0e-190 669.5 459 69.3
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 8.3e-189 664.1 408 75.2
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 3.2e-188 662.1 439 71.5
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 7.1e-188 661.0 440 70.0
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 2.7e-187 659.1 446 72.4
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 6.0e-187 657.9 446 72.2
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.3e-186 656.8 457 68.7
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.7e-186 656.4 455 67.3
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 2.3e-186 656.0 415 74.0
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 8.6e-186 654.1 457 70.9
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 1.2e-184 650.2 448 69.0
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 2.8e-184 649.0 402 73.1
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.1e-183 647.1 448 68.1
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 1.1e-183 647.1 442 69.5
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 1.8e-183 646.4 403 73.9
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 5.2e-183 644.8 402 74.1
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 6.8e-183 644.4 454 67.0
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 1.5e-182 643.3 408 72.8
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 2.0e-182 642.9 426 70.2
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 2.2e-181 639.4 402 72.1
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 8.4e-181 637.5 458 66.4
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 4.1e-180 635.2 454 67.4
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 9.2e-180 634.0 458 66.4
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 2.1e-179 632.9 426 70.4
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 6.0e-179 631.3 445 66.3
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 6.0e-179 631.3 434 67.7
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 3.0e-178 629.0 441 67.3
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 8.7e-178 627.5 409 71.1
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 1.5e-177 626.7 406 71.7
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.9e-177 626.3 443 66.4
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 2.5e-177 625.9 403 71.2
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 5.6e-177 624.8 442 67.0
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 9.6e-177 624.0 432 67.6
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 3.6e-176 622.1 441 66.4
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 6.2e-176 621.3 411 69.8
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.2e-174 617.1 417 69.5
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 1.5e-174 616.7 453 64.7
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 7.6e-174 614.4 407 70.3
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 1.4e-172 610.1 412 69.7
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 9.3e-172 607.4 432 66.2
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 1.0e-170 604.0 421 67.7
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 3.0e-170 602.4 423 67.8
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 3.0e-170 602.4 456 64.0
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.0e-170 602.4 474 62.7
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 6.6e-170 601.3 431 65.2
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.1e-169 600.5 436 64.4
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 1.9e-169 599.7 423 67.4
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 1.9e-169 599.7 423 67.4
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 9.6e-169 597.4 423 67.1
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 1.6e-168 596.7 422 67.1
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 2.1e-168 596.3 405 68.6
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 6.2e-168 594.7 412 68.2
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 6.2e-168 594.7 424 66.0
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.4e-167 593.6 427 65.3
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 6.9e-167 591.3 417 65.7
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 9.0e-167 590.9 411 67.9
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 9.0e-167 590.9 404 65.8
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 1.5e-166 590.1 416 65.6
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.5e-166 590.1 420 66.0
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.0e-166 589.7 427 65.8
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 2.2e-165 586.3 424 66.7
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 2.9e-165 585.9 429 65.7
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 2.4e-164 582.8 407 66.6
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 1.2e-163 580.5 410 66.6
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 2.1e-163 579.7 389 66.1
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.0e-162 577.4 469 57.4
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 1.9e-161 573.2 397 68.3
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.3e-160 570.5 387 67.7
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 4.0e-159 565.5 407 67.8
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 9.0e-159 564.3 430 64.2
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 2.2e-157 559.7 413 66.1
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.9e-157 558.5 423 61.0
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.9e-153 546.6 357 71.4
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 1.9e-153 546.6 419 60.9
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 4.3e-153 545.4 409 62.1
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 4.3e-153 545.4 353 71.1
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 4.0e-151 538.9 364 69.5
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 7.1e-148 528.1 360 68.3
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 1.1e-145 520.8 413 63.0
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 2.5e-145 519.6 349 69.3
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 2.9e-141 506.1 367 67.8
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 2.1e-139 500.0 398 59.3
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 3.6e-139 499.2 361 62.3
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 3.1e-119 433.0 404 51.5
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 4.5e-118 429.1 430 51.9
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 6.1e-115 418.7 399 48.9
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 2.3e-114 416.8 440 47.0
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.0e-113 413.7 273 74.0
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 2.6e-113 413.3 409 49.4
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 2.7e-110 403.3 258 74.4
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.3e-109 401.0 439 45.8
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.3e-93 347.8 266 66.2
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 3.6e-83 313.2 265 55.5
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 6.6e-69 265.8 189 57.1
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 2.2e-64 250.8 164 66.5
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 2.2e-64 250.8 174 69.5
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 3.5e-62 243.4 164 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 7.8e-62 242.3 223 52.9
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.2e-59 235.0 160 68.1
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 8.4e-48 195.7 133 64.7
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 1.5e-44 184.9 129 61.2
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 1.1e-28 132.1 383 26.4
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 1.3e-27 128.6 86 70.9
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 5.3e-26 123.2 377 28.4
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 2.2e-19 101.3 357 27.7
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 6.3e-19 99.8 483 24.4
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 5.7e-12 76.6 54 70.4
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 4.8e-11 73.6 80 56.2
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 5.3e-10 70.1 91 39.6
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 5.0e-08 63.5 164 31.1
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 1.1e-07 62.4 240 22.9
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 1.1e-07 62.4 55 50.9
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 9.4e-07 59.3 61 49.2
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 9.4e-07 59.3 61 49.2


User provided reference genes

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