Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 2056.2 974 100.0
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1899.0 977 92.0
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1865.1 973 91.1
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1764.6 980 85.1
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1729.5 967 84.4
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1714.1 990 83.4
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1713.0 977 83.4
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1706.0 969 82.9
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1697.9 975 82.6
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1696.8 989 81.1
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1695.2 977 82.5
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1692.2 977 81.5
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1691.8 984 81.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1680.2 959 81.8
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1677.5 982 80.8
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1673.3 977 81.0
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1671.8 966 81.3
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1671.0 979 81.1
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1667.9 969 81.2
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1667.9 979 80.7
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1638.6 973 78.8
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1635.5 973 78.9
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1632.8 973 79.7
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1618.6 978 77.6
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1617.8 974 77.7
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1612.0 975 77.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1611.3 962 78.1
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1604.3 976 78.0
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1604.3 973 76.7
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1603.2 977 77.2
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1600.1 960 78.1
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1599.3 977 77.3
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1595.9 977 76.7
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1595.9 979 76.6
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1589.7 968 77.1
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1588.5 973 77.6
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1588.5 969 77.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1587.0 990 76.4
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1587.0 968 76.4
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1585.1 977 75.7
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1583.9 969 76.0
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1578.5 975 76.2
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1575.5 975 76.3
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1568.9 974 74.8
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1567.4 981 75.6
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1567.0 978 75.4
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1566.6 983 75.6
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1559.7 983 75.8
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1559.3 983 76.0
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1558.9 979 76.0
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1558.1 977 75.2
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 975 74.6
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1552.7 973 75.3
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1550.8 974 74.6
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1549.3 974 74.0
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1549.3 968 74.9
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1543.5 970 74.8
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1541.6 972 74.4
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1541.2 968 74.5
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1536.2 968 74.8
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1536.2 985 74.0
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1533.1 965 75.4
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1529.2 975 74.7
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1528.5 974 73.4
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 976 73.5
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1525.4 976 74.0
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 976 73.5
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 963 73.7
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1522.3 964 74.3
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 974 73.8
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 977 73.4
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 980 73.2
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1520.0 968 73.3
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1519.2 978 73.1
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1519.2 974 73.3
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1515.7 977 73.1
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1512.7 961 74.6
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1510.0 982 72.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1509.2 972 72.7
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1508.8 933 76.4
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 969 72.9
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1498.8 975 72.2
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1498.0 976 72.3
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1488.4 981 71.4
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1485.3 965 72.6
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1485.3 786 89.7
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1480.7 969 72.0
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1473.8 970 71.1
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1468.8 976 71.5
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1468.4 957 70.7
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1463.4 967 70.4
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1461.8 940 74.1
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1459.1 971 72.2
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1458.7 971 71.5
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1456.8 969 71.4
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1453.3 973 71.1
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1453.3 771 87.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1440.2 962 70.9
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1437.6 962 71.0
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1437.6 874 76.2
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1433.3 964 69.9
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1432.9 968 70.1
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1431.8 958 71.3
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1431.8 968 70.4
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1427.5 968 69.9
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1427.5 988 69.0
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1420.6 1006 68.4
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1417.9 966 70.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1414.4 966 70.1
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1413.3 969 69.7
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1413.3 969 69.7
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1413.3 880 75.5
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1410.2 965 70.2
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1406.0 851 77.0
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1404.8 965 69.9
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1402.9 968 69.5
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1395.9 854 75.8
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1391.3 969 68.8
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1368.6 1004 64.6
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1335.5 966 67.5
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1328.9 982 65.8
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1299.3 969 66.0
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1285.0 972 65.1
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1255.7 845 69.9
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1229.9 773 74.3
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1218.8 782 73.7
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1177.9 787 70.8
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.3e-307 1058.9 965 54.2
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.1e-302 1041.2 678 72.6
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 2.0e-298 1029.2 954 54.1
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 8.7e-286 987.3 698 68.8
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 7.1e-280 967.6 962 51.5
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 6.2e-268 927.9 953 49.9
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.2e-268 927.9 959 50.3
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.0e-241 838.6 569 71.4
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 4.1e-235 818.9 909 48.8
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.9e-198 694.9 398 77.9
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 7.9e-130 469.2 285 77.5
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.2e-119 434.5 348 62.6
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 8.8e-113 412.5 412 54.4
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 6.8e-105 386.3 386 54.1
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 6.3e-103 379.8 212 83.0
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.1e-90 338.2 202 75.7
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.8e-86 325.1 188 79.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.4e-86 324.7 282 59.2
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 5.6e-75 287.0 159 80.5
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.6e-69 268.9 143 83.9
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.3e-68 265.8 156 78.2
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.3e-65 255.0 210 59.0
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 5.6e-59 233.8 640 29.2
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.4e-54 219.2 416 37.5
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 2.1e-45 188.7 96 85.4
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 8.4e-39 166.8 945 23.6
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.5e-35 156.0 150 54.7
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 1.5e-35 156.0 153 53.6
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 3.7e-34 151.4 120 59.2
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-33 149.4 92 75.0
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.4e-32 144.8 91 79.1
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 4.2e-30 137.9 163 44.8
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.6e-26 125.9 93 60.2
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.4e-25 122.9 93 62.4
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 5.9e-24 117.5 184 38.0
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-23 116.7 183 38.3
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 6.7e-20 104.0 127 44.1
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 5.9e-16 90.9 483 24.2
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-15 89.7 114 46.5
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 2.9e-15 88.6 119 43.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.6e-13 82.8 46 76.1
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 2.1e-13 82.4 71 56.3
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 6.9e-09 67.4 76 47.4
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 7.7e-08 63.9 48 64.6
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.4e-06 59.7 43 69.8


User provided reference genes

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