Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.9e-293 1011.9 556 100.0
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 7.5e-250 867.1 469 91.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.5e-239 831.2 465 89.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 6.1e-236 820.8 466 86.7
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 6.3e-233 810.8 467 84.4
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 6.6e-230 800.8 469 82.7
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.6e-230 800.4 469 82.7
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 6.1e-228 794.3 498 78.9
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.5e-226 789.6 498 78.9
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.8e-224 782.7 483 80.7
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 6.2e-220 767.7 469 78.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.9e-217 758.8 469 78.7
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 4.1e-216 755.0 514 73.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.9e-213 746.1 497 74.0
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 5.6e-213 744.6 469 76.5
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.1e-211 740.3 469 75.9
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-211 740.3 469 80.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.3e-211 739.2 469 74.6
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 3.1e-211 738.8 469 75.7
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 8.9e-211 737.3 469 75.9
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.5e-210 736.5 469 75.5
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 9.8e-210 733.8 468 75.0
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.7e-209 733.0 470 77.9
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.1e-208 730.3 469 73.6
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.4e-208 729.9 469 74.4
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 9.2e-208 727.2 468 74.4
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 2.1e-207 726.1 469 72.7
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.7e-207 725.7 468 73.5
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 3.5e-207 725.3 466 73.6
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.5e-207 725.3 469 74.0
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 4.6e-207 724.9 469 75.1
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 6.0e-207 724.5 468 73.1
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 7.8e-207 724.2 469 74.0
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.3e-206 723.4 465 74.4
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.0e-206 722.2 469 71.9
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 5.1e-206 721.5 469 73.3
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.1e-205 720.3 469 73.3
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 3.3e-205 718.8 466 71.7
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 3.3e-205 718.8 473 73.2
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 9.5e-205 717.2 469 71.6
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.2e-204 716.8 468 72.9
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.2e-204 716.8 468 72.9
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.6e-204 716.5 466 73.0
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.1e-204 716.1 469 71.9
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.1e-204 716.1 469 72.7
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 2.8e-204 715.7 472 72.2
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 3.6e-204 715.3 469 72.1
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 8.1e-204 714.1 469 74.0
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.3e-203 712.6 466 71.5
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.3e-203 712.6 469 71.6
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.0e-203 711.8 467 73.4
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 6.8e-203 711.1 469 73.3
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 6.8e-203 711.1 467 72.8
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 6.8e-203 711.1 469 72.3
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 6.8e-203 711.1 463 74.5
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 6.8e-203 711.1 466 72.5
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 8.9e-203 710.7 468 72.2
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 8.9e-203 710.7 478 71.5
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 2.6e-202 709.1 468 72.0
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 7.6e-202 707.6 469 72.9
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 9.9e-202 707.2 468 71.8
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.8e-201 705.3 469 72.3
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 3.8e-201 705.3 469 74.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 6.4e-201 704.5 469 70.6
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 6.4e-201 704.5 469 72.7
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.1e-200 703.7 463 73.9
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.4e-200 703.4 469 71.4
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.9e-200 703.0 466 71.0
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.1e-199 699.5 468 70.9
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 3.5e-199 698.7 465 71.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.7e-198 696.4 469 72.1
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.3e-198 696.0 469 71.9
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 3.0e-198 695.7 466 71.5
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 3.9e-198 695.3 469 71.2
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.9e-197 693.0 469 71.9
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 9.6e-197 690.6 499 67.9
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.6e-196 689.9 466 70.8
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.8e-196 689.1 469 71.4
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 8.1e-196 687.6 484 70.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-195 686.8 477 70.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.5e-194 683.3 469 70.8
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 2.0e-194 682.9 466 69.3
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 4.4e-194 681.8 486 69.8
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 5.8e-194 681.4 469 71.6
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 7.6e-194 681.0 466 69.1
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 7.6e-194 681.0 490 68.0
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.4e-193 677.9 467 70.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.4e-193 677.9 467 70.7
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 8.4e-193 677.6 469 71.4
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.2e-192 675.2 467 70.4
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.1e-191 672.9 462 69.9
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.6e-191 671.8 482 68.3
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.0e-190 670.6 469 69.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.0e-190 669.1 469 71.0
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 4.3e-189 665.2 459 70.8
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 9.6e-189 664.1 469 68.0
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.1e-188 662.9 455 69.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.8e-188 661.8 469 69.7
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 6.2e-188 661.4 470 70.0
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.8e-187 659.8 477 67.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.0e-187 657.5 479 68.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.3e-185 653.7 531 61.8
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.2e-185 652.9 457 70.2
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 3.2e-184 649.0 467 67.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.2e-184 649.0 482 66.8
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.3e-182 643.7 466 68.0
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.0e-182 642.5 467 66.8
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.5e-181 640.2 455 68.8
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.6e-180 636.7 467 67.2
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.8e-179 633.3 609 55.7
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.4e-176 623.6 464 64.7
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.5e-176 621.7 455 67.7
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 6.9e-171 604.7 522 61.5
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.9e-165 586.6 467 63.6
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.6e-162 576.2 469 63.5
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.2e-159 567.4 363 74.9
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-157 560.8 366 74.0
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.1e-157 560.8 391 69.1
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 6.5e-153 545.0 464 56.7
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 5.1e-150 535.4 470 55.5
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.5e-146 522.3 470 55.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 4.5e-146 522.3 362 70.2
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.9e-145 519.6 469 55.7
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.4e-141 505.8 469 57.6
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-139 500.7 361 69.0
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-135 487.6 474 54.0
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 6.1e-135 485.3 381 65.1
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.3e-129 467.6 325 68.9
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 5.5e-128 462.2 316 71.2
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.6e-125 453.4 288 75.7
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 9.8e-125 451.4 276 80.1
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 9.5e-112 408.3 476 46.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.3e-108 397.9 478 46.0
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 4.6e-106 389.4 276 68.8
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.3e-105 387.9 219 86.3
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.2e-103 381.3 243 74.5
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.2e-93 348.2 217 76.0
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 7.1e-91 339.0 456 41.4
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.0e-89 335.1 213 73.7
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-88 331.6 226 69.0
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 9.5e-88 328.6 232 65.9
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.6e-87 327.8 227 69.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.1e-86 325.1 253 63.6
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.5e-85 321.2 227 66.5
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 4.9e-84 316.2 201 75.1
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.1e-75 288.5 267 52.8
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 4.2e-75 286.6 470 35.7
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.6e-73 279.3 187 73.8
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.9e-64 251.1 488 34.4
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 3.7e-63 246.9 158 75.3
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.9e-61 238.8 284 49.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.0e-57 227.3 157 68.8
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.6e-55 221.5 184 63.6
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.5e-51 206.5 139 74.1
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 7.1e-51 206.1 283 44.2
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.1e-41 173.3 125 64.8
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 8.8e-41 172.6 114 71.9
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.3e-40 170.6 137 60.6
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.7e-39 168.3 124 64.5
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.4e-35 155.2 317 38.2
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 3.2e-35 154.1 155 52.9
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 3.9e-33 147.1 316 35.4
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.8e-30 138.3 88 72.7
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.1e-30 137.1 80 78.8
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 1.5e-29 135.2 85 67.1
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.6e-29 134.4 76 82.9
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.7e-28 131.7 104 68.3
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 4.2e-27 127.1 81 70.4
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 7.2e-27 126.3 84 72.6
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.8e-25 121.7 77 75.3
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-24 118.6 134 48.5
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 3.7e-23 114.0 64 82.8
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 4.5e-21 107.1 63 77.8
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.0e-20 105.9 85 63.5
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 8.5e-20 102.8 89 55.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 8.5e-20 102.8 82 65.9
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 7.2e-19 99.8 65 67.7
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-18 99.0 74 55.4
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.5e-16 92.0 55 72.7
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 3.3e-16 90.9 64 64.1
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.7e-13 81.3 159 37.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 8.5e-12 76.3 48 72.9
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.7e-10 71.2 111 42.3
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 1.7e-07 62.0 51 56.9


User provided reference genes

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