Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 0.0e+00 1551.6 799 100.0
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 3.2e-281 971.8 820 66.3
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.5e-278 963.0 820 65.7
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.5e-275 953.0 819 64.5
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 1.7e-271 939.5 823 62.8
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.8e-268 929.5 825 62.4
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 2.2e-266 922.5 825 61.9
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 1.1e-265 920.2 824 61.4
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.2e-258 896.0 818 61.4
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 6.0e-256 887.9 820 60.0
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.7e-253 878.6 819 61.3
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 8.5e-242 840.9 819 59.8
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 9.4e-225 784.3 827 54.1
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 7.5e-222 774.6 820 53.5
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 5.3e-220 768.5 827 52.6
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 1.9e-217 760.0 828 52.1
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 3.4e-214 749.2 827 52.1
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 5.7e-214 748.4 830 51.4
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 5.7e-214 748.4 828 52.3
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 2.8e-213 746.1 840 51.4
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 3.7e-213 745.7 830 50.7
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 4.8e-213 745.3 859 50.5
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.4e-212 743.0 703 59.7
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 5.4e-212 741.9 830 51.2
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 5.4e-212 741.9 830 51.2
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.6e-211 740.3 829 51.0
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.6e-211 740.3 829 51.0
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 3.5e-211 739.2 839 50.9
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 5.9e-211 738.4 828 51.6
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 8.5e-210 734.6 827 51.3
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.5e-209 731.9 829 50.3
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 7.2e-209 731.5 811 51.5
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 3.6e-208 729.2 825 50.9
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 6.1e-208 728.4 815 51.9
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 1.5e-206 723.8 823 50.3
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 2.0e-206 723.4 829 51.4
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.4e-206 722.2 826 50.2
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 5.4e-204 715.3 822 50.9
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.2e-203 714.1 821 50.1
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.6e-203 713.8 823 50.7
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 2.0e-203 713.4 829 49.3
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 5.6e-201 705.3 830 50.0
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 9.5e-201 704.5 821 49.1
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 2.8e-200 703.0 819 49.7
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 5.2e-199 698.7 816 49.3
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.4e-198 696.0 826 49.4
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 5.7e-198 695.3 826 48.7
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 2.2e-197 693.3 828 48.7
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 1.8e-196 690.3 817 49.1
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.8e-196 690.3 825 48.4
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 4.1e-196 689.1 826 49.6
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 4.1e-196 689.1 825 48.4
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.0e-194 684.5 805 48.4
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 1.3e-194 684.1 812 50.6
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 9.5e-193 677.9 803 49.1
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.4e-191 674.1 807 49.3
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.3e-191 673.3 831 47.5
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 2.3e-191 673.3 856 46.0
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 3.1e-191 672.9 856 46.0
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 2.0e-190 670.2 828 47.7
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 2.6e-190 669.8 825 48.1
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 7.5e-190 668.3 881 47.0
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 7.0e-188 661.8 832 46.5
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 3.0e-186 656.4 802 47.5
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 5.0e-186 655.6 830 47.1
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.8e-184 649.8 794 47.2
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.8e-183 647.1 981 44.0
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 2.6e-182 643.3 832 45.9
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.7e-181 640.6 824 46.8
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 6.4e-181 638.6 830 45.5
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 2.4e-180 636.7 830 46.1
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 3.2e-180 636.3 830 45.8
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 5.4e-180 635.6 824 46.5
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 4.6e-179 632.5 830 45.7
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 1.3e-178 630.9 826 45.2
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 1.7e-178 630.6 828 45.4
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.7e-178 630.6 832 45.4
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 2.3e-178 630.2 833 45.3
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 5.1e-178 629.0 828 45.3
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 4.3e-177 625.9 829 45.0
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 9.5e-177 624.8 831 44.8
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.2e-176 624.4 829 45.6
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.6e-176 624.0 831 45.0
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.6e-176 624.0 834 44.7
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 2.1e-176 623.6 831 45.0
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 2.9e-173 613.2 831 44.4
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 3.7e-173 612.8 825 44.0
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.9e-172 610.5 829 44.6
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.9e-172 610.5 831 44.3
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.9e-172 610.5 829 44.6
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 2.4e-172 610.1 717 48.5
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 8.1e-168 595.1 855 42.9
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 8.4e-165 585.1 805 45.1
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 6.6e-162 575.5 817 42.8
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 2.4e-156 557.0 655 49.3
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 3.3e-153 546.6 825 41.5
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 5.3e-151 539.3 832 40.7
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 9.9e-150 535.0 862 39.1
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.7e-149 534.3 595 50.8
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 1.9e-145 520.8 655 46.4
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 5.6e-145 519.2 820 39.9
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 1.3e-141 508.1 851 36.9
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 4.6e-131 473.0 698 41.8
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 9.7e-129 465.3 805 37.8
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 2.1e-123 447.6 579 45.6
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 1.4e-111 408.3 576 40.8
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 1.2e-110 405.2 846 33.5
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.0e-106 392.1 739 36.1
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 7.5e-97 359.4 699 36.5
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 5.2e-90 336.7 614 37.1
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 1.2e-89 335.5 838 30.7
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 8.3e-88 329.3 858 29.3
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 5.4e-79 300.1 368 50.8
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 3.9e-77 293.9 666 31.2
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 5.0e-69 266.9 272 54.8
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-68 265.4 610 34.3
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 9.2e-63 246.1 266 54.5
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-62 245.7 542 34.3
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 2.1e-62 245.0 576 31.2
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-61 241.9 494 35.0
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 5.1e-61 240.4 388 40.2
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 6.2e-59 233.4 258 52.7
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 3.1e-58 231.1 353 44.5
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 4.0e-58 230.7 209 60.3
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 4.0e-58 230.7 264 51.9
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 3.8e-56 224.2 264 51.1
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 1.5e-52 212.2 130 77.7
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 2.1e-46 191.8 235 49.8
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 6.0e-46 190.3 186 60.8
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.3e-43 182.6 763 24.6
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-42 178.7 422 31.3
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 2.6e-41 174.9 187 53.5
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.6e-41 174.9 228 46.1
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.3e-40 172.6 114 69.3
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 1.2e-38 166.0 145 58.6
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 3.9e-37 161.0 102 74.5
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.1e-36 159.5 169 50.9
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.1e-36 159.5 102 73.5
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.0e-34 149.8 89 76.4
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.0e-34 149.8 89 76.4
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.0e-34 149.8 89 76.4
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.7e-32 145.6 103 70.9
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.9e-32 144.8 85 76.5
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 4.2e-31 141.0 161 48.4
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-29 136.3 107 59.8
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 5.1e-29 134.0 356 29.8
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 5.1e-29 134.0 79 79.7
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 6.7e-29 133.7 79 75.9
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 3.3e-28 131.3 82 75.6
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 1.8e-26 125.6 92 67.4
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 5.8e-25 120.6 98 62.2
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 6.5e-24 117.1 79 69.6
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.1e-20 106.3 106 52.8
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 8.2e-19 100.1 86 64.0
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 1.4e-18 99.4 54 77.8
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 5.3e-18 97.4 62 69.4
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 6.9e-18 97.1 77 64.9
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 1.5e-17 95.9 49 91.8
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 5.9e-17 94.0 62 67.7
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-16 92.8 77 54.5
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 2.2e-16 92.0 186 37.6
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 3.8e-16 91.3 56 67.9
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 8.5e-16 90.1 63 63.5
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 8.5e-16 90.1 55 67.3
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 8.5e-16 90.1 56 66.1
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 4.6e-14 84.3 55 74.5
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-13 83.2 128 39.8
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-12 79.3 55 61.8
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 9.7e-12 76.6 52 67.3
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 9.7e-12 76.6 62 59.7
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 4.1e-10 71.2 106 41.5
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 4.1e-10 71.2 106 41.5
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 6.9e-10 70.5 189 34.9
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 1.4e-07 62.8 36 75.0
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 4.2e-07 61.2 96 45.8
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 5.5e-07 60.8 30 83.3
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 7.2e-07 60.5 79 43.0
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 2.7e-06 58.5 32 78.1


User provided reference genes

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