Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 2.5e-273 944.9 504 100.0
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 6.8e-226 787.3 441 92.7
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 3.4e-225 785.0 441 92.3
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 2.2e-224 782.3 441 91.8
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 1.4e-215 753.1 492 83.9
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 4.1e-215 751.5 441 88.4
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 2.3e-213 745.7 444 87.8
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 1.5e-212 743.0 441 87.3
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 2.5e-212 742.3 442 87.6
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 5.6e-212 741.1 438 87.4
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 4.0e-210 734.9 443 87.4
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 2.6e-209 732.3 417 89.0
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 5.8e-201 704.5 440 82.3
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 7.6e-201 704.1 446 82.3
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 1.3e-200 703.4 440 80.7
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 5.4e-199 698.0 442 82.4
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 1.6e-198 696.4 441 83.0
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 3.5e-198 695.3 442 79.4
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 1.7e-197 693.0 440 80.9
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.5e-196 689.9 441 82.1
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 5.6e-196 688.0 441 78.7
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 7.3e-196 687.6 443 79.5
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 9.6e-196 687.2 416 82.9
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.6e-195 686.4 440 77.5
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 3.6e-195 685.3 441 79.4
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 4.8e-195 684.9 444 78.6
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 4.5e-193 678.3 440 76.8
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 5.8e-193 677.9 421 80.5
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 7.6e-193 677.6 448 80.8
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 1.7e-192 676.4 441 77.3
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 6.4e-192 674.5 440 80.0
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 1.4e-191 673.3 447 79.4
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 3.2e-191 672.2 441 77.1
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.6e-190 669.8 440 75.9
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 1.6e-190 669.8 445 76.4
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 6.0e-190 667.9 441 77.3
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 6.0e-190 667.9 441 77.1
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 7.9e-190 667.5 467 75.4
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 1.0e-189 667.2 445 78.2
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.8e-189 666.4 441 77.1
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 3.9e-189 665.2 440 76.1
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 1.1e-188 663.7 445 76.0
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 2.5e-188 662.5 464 73.5
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 2.5e-188 662.5 440 76.4
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 3.3e-188 662.1 427 78.9
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 4.3e-188 661.8 441 76.0
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 9.6e-188 660.6 447 76.5
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.3e-187 660.2 427 78.7
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 1.6e-187 659.8 446 75.1
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 2.8e-187 659.1 441 76.4
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.8e-187 659.1 442 76.9
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 6.2e-187 657.9 441 76.6
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.8e-186 656.4 441 76.2
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 5.3e-186 654.8 445 77.3
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 2.0e-185 652.9 441 75.7
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 2.0e-185 652.9 441 76.0
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 2.2e-184 649.4 449 73.9
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.8e-184 648.7 444 76.4
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 4.9e-184 648.3 448 77.0
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 6.4e-184 647.9 448 73.4
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 8.4e-184 647.5 460 72.0
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 1.4e-183 646.7 440 74.3
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 1.9e-183 646.4 436 76.6
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 2.4e-183 646.0 448 74.1
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 4.2e-183 645.2 449 75.9
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 1.6e-182 643.3 439 74.3
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.6e-182 643.3 445 76.9
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 1.6e-182 643.3 448 75.7
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 3.5e-182 642.1 448 75.7
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 7.9e-182 641.0 443 75.4
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 1.0e-181 640.6 440 73.6
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 2.3e-181 639.4 455 72.5
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 3.0e-181 639.0 448 75.2
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 8.7e-181 637.5 464 74.6
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.1e-180 637.1 443 75.6
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 3.3e-180 635.6 443 75.2
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 5.6e-180 634.8 505 66.1
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 1.3e-179 633.6 447 74.7
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 2.1e-179 632.9 467 71.9
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 2.1e-179 632.9 443 74.0
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 4.8e-179 631.7 420 75.2
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 1.1e-178 630.6 447 73.6
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 4.0e-178 628.6 467 72.2
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 4.0e-178 628.6 467 72.2
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 4.0e-178 628.6 467 72.2
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 4.0e-178 628.6 444 73.0
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 4.5e-177 625.2 444 73.0
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 4.5e-177 625.2 443 73.8
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 4.5e-177 625.2 441 73.2
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 1.0e-176 624.0 443 73.1
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 1.0e-176 624.0 420 74.8
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.3e-176 623.6 401 76.8
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 4.9e-176 621.7 490 67.6
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 1.9e-175 619.8 468 71.2
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.5e-175 619.4 445 73.0
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 4.2e-175 618.6 468 70.9
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 4.2e-175 618.6 444 72.7
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 4.6e-174 615.1 441 72.1
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 6.0e-174 614.8 469 69.9
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 3.0e-173 612.5 441 70.3
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 6.7e-173 611.3 461 68.1
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 6.3e-171 604.7 450 69.8
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 2.0e-169 599.7 399 74.4
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 1.4e-167 593.6 443 68.6
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 7.9e-166 587.8 447 66.7
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 3.7e-163 578.9 444 68.9
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 5.3e-162 575.1 464 64.2
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 6.5e-160 568.2 420 66.7
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.4e-159 567.0 399 72.7
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 7.9e-158 561.2 417 71.5
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 1.2e-140 504.2 318 79.9
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 1.4e-138 497.3 399 61.2
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.3e-136 490.7 362 72.1
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 4.0e-133 479.2 411 59.1
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 3.2e-127 459.5 402 55.5
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 3.7e-115 419.5 450 51.6
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 1.6e-102 377.5 291 64.3
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 2.0e-100 370.5 406 51.2
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 6.6e-96 355.5 535 39.1
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.4e-90 337.8 238 75.6
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 6.2e-78 295.8 188 77.7
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 4.6e-65 253.1 270 57.0
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 5.1e-56 223.0 209 62.2
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 2.2e-54 217.6 258 54.3
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 2.8e-54 217.2 258 54.3
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.4e-50 204.9 145 74.5
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 2.9e-43 180.6 148 66.2
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 1.8e-40 171.4 140 63.6
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 1.2e-36 158.7 99 80.8
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 3.4e-36 157.1 125 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 9.7e-31 139.0 397 30.0
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 1.7e-22 111.7 60 90.0
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 1.2e-20 105.5 59 84.7
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.6e-17 95.1 57 82.5
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 4.4e-15 87.0 69 69.6


User provided reference genes

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