Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32610 Trifolium pratense HOM05D002954 ORTHO05D003353 2.1e-47 192.2 107 100.0
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 2.6e-34 148.7 88 80.7
TPR.G16180 Trifolium pratense HOM05D002954 ORTHO05D003353 2.9e-33 145.2 76 93.4
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.3e-25 119.8 88 65.9
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 3.8e-25 118.2 88 64.8
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 4.9e-25 117.9 88 64.8
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 1.4e-24 116.3 88 64.8
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 5.4e-24 114.4 81 67.9
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 4.6e-23 111.3 88 61.4
Sopen09g020910 Solanum pennellii HOM05D002954 ORTHO05D003353 8.7e-22 107.1 88 58.0
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 1.9e-21 105.9 88 59.1
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.6e-20 102.8 88 59.1
Nitab4.5_0000386g0150 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.1e-20 100.5 72 63.9
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 2.4e-19 99.0 86 55.8
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 9.0e-19 97.1 86 55.8
Nitab4.5_0000051g0340 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.4e-18 95.1 74 60.8
arahy.Tifrunner.gnm1.ann1.B3S8NN Arachis hypogaea HOM05D002954 ORTHO05D003353 4.5e-18 94.7 88 55.7
Sopen04g020530 Solanum pennellii HOM05D002954 ORTHO05D003353 7.6e-18 94.0 80 58.8
Sopen11g015860 Solanum pennellii HOM05D002954 ORTHO05D003353 9.9e-18 93.6 80 57.5
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 1.1e-16 90.1 88 53.4
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 1.1e-16 90.1 73 56.2
Lalb_Chr22g0361071 Lupinus albus HOM05D002954 ORTHO05D003353 4.2e-16 88.2 72 55.6
TPR.G3822 Trifolium pratense HOM05D002954 ORTHO05D003353 2.7e-15 85.5 44 93.2
Psat0s2772g0080 Pisum sativum HOM05D002954 ORTHO05D003353 3.5e-15 85.1 86 51.2
arahy.Tifrunner.gnm1.ann1.LE5ID3 Arachis hypogaea HOM05D009662 ORTHO05D003353 6.0e-15 84.3 74 54.1
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 7.9e-15 84.0 86 54.7
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.3e-14 83.2 88 50.0
Psat5g237440 Pisum sativum HOM05D002954 ORTHO05D003353 1.3e-14 83.2 86 47.7
arahy.Tifrunner.gnm1.ann1.C14DTV Arachis hypogaea HOM05D009662 ORTHO05D003353 1.8e-14 82.8 88 48.9
Sopen04g009500 Solanum pennellii HOM05D022806 ORTHO05D030645 6.7e-14 80.9 66 57.6
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 1.1e-13 80.1 88 48.9
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 1.1e-13 80.1 88 48.9
Solyc07g026873.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.5e-13 79.7 71 52.1
arahy.Tifrunner.gnm1.ann1.FG1AAR Arachis hypogaea HOM05D009662 ORTHO05D003353 2.5e-13 79.0 64 59.4
Psat2g134520 Pisum sativum HOM05D002954 ORTHO05D003353 2.5e-13 79.0 88 48.9
Solyc05g042010.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 4.3e-13 78.2 65 56.9
Nitab4.5_0000817g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 7.4e-13 77.4 88 50.0
arahy.Tifrunner.gnm1.ann1.T3L04J Arachis hypogaea HOM05D009662 ORTHO05D003353 9.6e-13 77.0 87 49.4
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 9.6e-13 77.0 86 48.8
Ca_03866_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 1.6e-12 76.3 86 46.5
Nitab4.5_0000002g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.1e-12 75.9 88 46.6
Nitab4.5_0000008g0430 Nicotiana tabacum HOM05D002954 ORTHO05D015034 3.7e-12 75.1 57 59.6
Nitab4.5_0000229g0050 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.7e-12 75.1 88 47.7
Solyc10g150115.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 4.8e-12 74.7 77 49.4
arahy.Tifrunner.gnm1.ann1.35BP8C Arachis hypogaea HOM05D009662 ORTHO05D003353 8.2e-12 73.9 80 48.8
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 8.2e-12 73.9 87 43.7
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 8.2e-12 73.9 87 43.7
Nitab4.5_0003353g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.2e-12 73.9 72 52.8
Peaxi162Scf00002g05111 Petunia axillaris HOM05D002954 ORTHO05D003353 1.4e-11 73.2 85 49.4
arahy.Tifrunner.gnm1.ann1.H1PTY0 Arachis hypogaea HOM05D002954 ORTHO05D010308 3.1e-11 72.0 86 45.3
arahy.Tifrunner.gnm1.ann1.HMQ64L Arachis hypogaea HOM05D002954 ORTHO05D003353 4.0e-11 71.6 79 48.1
Peaxi162Scf00016g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 4.0e-11 71.6 85 48.2
Peaxi162Scf00173g00019 Petunia axillaris HOM05D002954 ORTHO05D003353 4.0e-11 71.6 85 48.2
arahy.Tifrunner.gnm1.ann1.FX9Q6E Arachis hypogaea HOM05D002954 ORTHO05D003353 5.3e-11 71.2 49 69.4
arahy.Tifrunner.gnm1.ann1.VWW6CB Arachis hypogaea HOM05D002954 ORTHO05D003353 5.3e-11 71.2 49 69.4
VMungo1309G2137 Vigna mungo HOM05D000006 ORTHO05D000001 5.3e-11 71.2 53 60.4
Nitab4.5_0001076g0100 Nicotiana tabacum HOM05D002954 ORTHO05D003353 6.9e-11 70.9 86 47.7
Nitab4.5_0002430g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 9.0e-11 70.5 86 45.3
Ca_14618_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 1.5e-10 69.7 86 44.2
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 2.0e-10 69.3 87 42.5
Lj1g0003177 Lotus japonicus HOM05D002954 ORTHO05D003353 2.0e-10 69.3 75 49.3
Nitab4.5_0006167g0030 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.0e-10 69.3 72 50.0
Nitab4.5_0000416g0230 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.6e-10 68.9 86 45.3
A03p63400 Brassica napus HOM05D008309 ORTHO05D010308 4.5e-10 68.2 87 40.2
BraA06t25453Z Brassica rapa HOM05D008309 ORTHO05D010308 4.5e-10 68.2 87 40.2
C04p50470 Brassica napus HOM05D008309 ORTHO05D010308 5.8e-10 67.8 86 39.5
Peaxi162Scf00093g00015 Petunia axillaris HOM05D002954 ORTHO05D010308 5.8e-10 67.8 85 47.1
BolC4t26644H Brassica oleracea HOM05D008309 ORTHO05D010308 7.6e-10 67.4 87 40.2
BolC9t56521H Brassica oleracea HOM05D008309 ORTHO05D010308 7.6e-10 67.4 87 40.2
Peaxi162Scf00485g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 7.6e-10 67.4 97 42.3
Psat3g100040 Pisum sativum HOM05D002954 ORTHO05D003353 7.6e-10 67.4 73 49.3
BolC3t19893H Brassica oleracea HOM05D008309 ORTHO05D010308 1.3e-09 66.6 87 41.4
BolC8t50055H Brassica oleracea HOM05D008309 ORTHO05D010308 1.3e-09 66.6 87 41.4
BraA04t17652Z Brassica rapa HOM05D008309 ORTHO05D010308 1.3e-09 66.6 87 41.4
arahy.Tifrunner.gnm1.ann1.DXNF3X Arachis hypogaea HOM05D002954 ORTHO05D003353 1.7e-09 66.2 85 44.7
AT1G40087 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 2.2e-09 65.9 87 41.4
A09p47040 Brassica napus HOM05D008309 ORTHO05D010308 2.9e-09 65.5 87 37.9
BraA09t40169Z Brassica rapa HOM05D008309 ORTHO05D010308 2.9e-09 65.5 87 37.9
Solyc12g019450.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 2.9e-09 65.5 61 50.8
Nitab4.5_0007501g0010 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.8e-09 65.1 84 47.6
arahy.Tifrunner.gnm1.ann1.R8QYAJ Arachis hypogaea HOM05D009662 ORTHO05D003353 4.9e-09 64.7 76 47.4
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 6.5e-09 64.3 92 41.3
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 6.5e-09 64.3 92 41.3
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 6.5e-09 64.3 92 41.3
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.4e-09 63.9 90 40.0
BolC2t08113H Brassica oleracea HOM05D008309 ORTHO05D010308 1.1e-08 63.5 87 40.2
MBI02_g15369_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.1e-08 63.5 72 41.7
Sopen01g012120 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-08 63.5 64 54.7
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 1.4e-08 63.2 101 34.7
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.5e-08 62.4 92 39.1
TPR.G24473 Trifolium pratense HOM05D024240 ORTHO05D000385 3.2e-08 62.0 92 38.0
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 3.2e-08 62.0 87 42.5
C01p42640 Brassica napus HOM05D008309 ORTHO05D010308 4.2e-08 61.6 89 40.4
ECA234G1533 Erigeron canadensis HOM05D000107 ORTHO05D000062 7.1e-08 60.8 88 38.6
Phvul.003G087300 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 7.1e-08 60.8 88 38.6
Psat0s4310g0080 Pisum sativum HOM05D016237 ORTHO05D010767 7.1e-08 60.8 86 37.2
Nitab4.5_0003410g0070 Nicotiana tabacum HOM05D002954 ORTHO05D003353 9.3e-08 60.5 70 47.1
Nitab4.5_0007595g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 9.3e-08 60.5 117 35.0
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 1.2e-07 60.1 88 37.5
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 1.6e-07 59.7 87 39.1
C02p41170 Brassica napus HOM05D008309 ORTHO05D010308 2.1e-07 59.3 84 36.9
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.1e-07 59.3 92 39.1
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.1e-07 59.3 92 39.1
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.1e-07 59.3 92 39.1
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.1e-07 59.3 92 39.1
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.1e-07 59.3 92 39.1
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.1e-07 59.3 92 39.1
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.7e-07 58.9 92 39.1
Nitab4.5_0000140g0170 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.7e-07 58.9 65 49.2
TWI53G0470 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 2.7e-07 58.9 91 38.5
CSS0036507 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.5e-07 58.5 100 37.0
ECA232G4413 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.5e-07 58.5 85 38.8
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 3.5e-07 58.5 91 38.5
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 3.5e-07 58.5 85 42.4
Nitab4.5_0006180g0060 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.6e-07 58.2 39 64.1
Psat0s797g0080 Pisum sativum HOM05D002954 ORTHO05D010767 4.6e-07 58.2 86 36.0
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.0e-07 57.8 92 38.0
Nitab4.5_0003879g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 6.0e-07 57.8 70 45.7
Peaxi162Scf01294g00128 Petunia axillaris HOM05D009128 ORTHO05D011389 7.9e-07 57.4 117 33.3
Os10g0195100 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 1.0e-06 57.0 86 34.9
Os12g0417000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 1.0e-06 57.0 86 34.9
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 1.3e-06 56.6 110 31.8
Nitab4.5_0006180g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.8e-06 56.2 43 62.8
Peaxi162Scf00417g00048 Petunia axillaris HOM05D002954 ORTHO05D003353 1.8e-06 56.2 69 44.9
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.8e-06 56.2 91 38.5
A04p20790 Brassica napus HOM05D008309 ORTHO05D010308 2.3e-06 55.8 74 40.5
COL.COLO4_33862 Corchorus olitorius HOM05D001309 ORTHO05D000385 2.3e-06 55.8 94 39.4
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 2.3e-06 55.8 85 36.5
Nitab4.5_0004985g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.1e-06 54.7 46 58.7
TPR.G27910 Trifolium pratense HOM05D009128 ORTHO05D011389 5.1e-06 54.7 96 33.3
Nn5g26964 Nelumbo nucifera HOM05D029553 ORTHO05D000385 6.7e-06 54.3 86 36.0
arahy.Tifrunner.gnm1.ann1.1S2QVS Arachis hypogaea HOM05D009662 ORTHO05D003353 8.7e-06 53.9 43 58.1
arahy.Tifrunner.gnm1.ann1.2WW1WS Arachis hypogaea HOM05D009662 ORTHO05D003353 8.7e-06 53.9 43 58.1
arahy.Tifrunner.gnm1.ann1.C5M9FF Arachis hypogaea HOM05D002954 ORTHO05D000385 8.7e-06 53.9 85 34.1
arahy.Tifrunner.gnm1.ann1.NBL2GQ Arachis hypogaea HOM05D009662 ORTHO05D003353 8.7e-06 53.9 43 58.1
arahy.Tifrunner.gnm1.ann1.XG7NYG Arachis hypogaea HOM05D009662 ORTHO05D003353 8.7e-06 53.9 43 58.1
Nitab4.5_0002100g0170 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.7e-06 53.9 40 65.0


User provided reference genes

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