Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 2.8e-258 894.8 459 100.0
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 8.2e-186 654.1 460 72.8
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 1.0e-175 620.5 381 84.5
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 1.4e-174 616.7 436 73.2
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 1.9e-174 616.3 428 74.3
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.3e-170 603.6 475 66.5
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 6.3e-170 601.3 474 66.5
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 8.2e-170 600.9 427 70.0
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 1.8e-169 599.7 408 73.5
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 2.6e-168 595.9 474 65.8
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 2.6e-168 595.9 424 70.8
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 7.7e-168 594.3 450 67.1
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 1.3e-167 593.6 360 84.7
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 8.5e-167 590.9 476 64.1
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 1.9e-166 589.7 471 65.0
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 3.6e-165 585.5 432 67.4
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 6.1e-165 584.7 414 71.0
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 1.8e-164 583.2 477 63.7
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.0e-164 582.4 504 61.5
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 6.7e-164 581.3 432 68.1
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 1.1e-161 573.9 410 70.0
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 2.4e-161 572.8 480 62.1
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 3.1e-161 572.4 444 65.3
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 7.0e-161 571.2 424 66.5
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 4.5e-160 568.5 424 66.7
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 4.5e-160 568.5 457 63.5
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 5.9e-160 568.2 460 63.7
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 2.2e-159 566.2 405 68.9
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 6.5e-159 564.7 423 66.2
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 8.5e-159 564.3 428 65.9
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-158 562.8 501 60.9
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.5e-158 562.8 411 67.6
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.2e-158 562.0 424 65.3
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 9.4e-158 560.8 411 67.4
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 1.2e-157 560.5 437 64.3
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 1.2e-157 560.5 420 66.7
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.1e-157 559.7 466 62.4
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.1e-157 559.7 424 65.8
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.7e-157 559.3 424 65.1
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.7e-157 559.3 401 68.3
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.7e-157 559.3 475 60.6
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 3.6e-157 558.9 443 66.1
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 8.0e-157 557.8 475 61.7
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 6.8e-156 554.7 427 64.6
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.2e-155 553.9 458 61.4
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 2.6e-155 552.7 424 66.7
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 1.7e-154 550.1 467 62.1
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 3.7e-154 548.9 392 69.4
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 6.3e-154 548.1 426 64.8
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 4.1e-153 545.4 450 62.0
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 7.0e-153 544.7 463 62.0
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 2.0e-152 543.1 424 63.0
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 2.0e-152 543.1 512 56.4
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 4.5e-152 542.0 461 64.0
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 5.9e-152 541.6 420 66.0
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 7.7e-152 541.2 477 58.9
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 1.0e-151 540.8 424 62.7
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 1.5e-150 537.0 404 68.3
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.6e-149 533.5 421 64.1
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 1.2e-147 527.3 369 69.4
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 1.4e-145 520.4 452 58.6
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 1.4e-145 520.4 399 65.4
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.8e-145 520.0 424 61.8
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 3.5e-144 515.8 404 66.6
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 3.8e-143 512.3 408 63.0
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 1.5e-142 510.4 399 63.4
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 3.3e-142 509.2 399 63.9
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 4.3e-142 508.8 427 61.4
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 5.6e-142 508.4 399 63.4
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 9.5e-142 507.7 391 66.2
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 9.5e-142 507.7 481 57.8
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 1.2e-141 507.3 399 63.7
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 1.6e-141 506.9 383 66.1
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 4.7e-141 505.4 423 61.9
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 2.3e-140 503.1 391 65.5
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 1.2e-139 500.7 434 59.9
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 5.7e-139 498.4 410 61.0
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 5.9e-136 488.4 404 61.1
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 3.9e-135 485.7 431 58.5
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 6.6e-135 485.0 398 61.8
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 1.5e-134 483.8 410 59.8
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 2.1e-133 479.9 423 59.8
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 8.0e-133 478.0 390 62.3
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 2.6e-131 473.0 477 53.7
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 1.3e-130 470.7 353 67.1
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.9e-130 469.5 360 65.6
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.2e-129 466.1 360 65.3
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 1.7e-127 460.3 398 59.8
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 2.3e-127 459.9 465 54.8
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 8.3e-122 441.4 405 56.5
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 2.1e-120 436.8 413 58.6
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 1.3e-119 434.1 381 60.9
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 1.8e-116 423.7 405 55.1
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 2.0e-115 420.2 346 60.4
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.8e-115 418.7 409 58.7
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 1.3e-114 417.5 383 56.1
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 2.7e-112 409.8 403 53.6
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 3.3e-110 402.9 323 62.2
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 3.8e-106 389.4 397 50.9
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 4.3e-102 375.9 285 66.3
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 1.7e-98 364.0 339 57.5
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 4.2e-89 332.8 346 50.6
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 1.6e-88 330.9 349 50.4
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 3.5e-88 329.7 247 68.0
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 6.7e-87 325.5 331 49.8
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 2.5e-86 323.6 546 39.4
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 5.8e-83 312.4 397 45.1
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.3e-82 311.2 391 48.6
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 7.6e-75 285.4 271 57.2
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 2.7e-72 276.9 191 69.6
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 3.9e-71 273.1 167 77.2
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 1.9e-70 270.8 317 47.0
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 3.2e-65 253.4 223 59.2
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 1.0e-63 248.4 161 72.0
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 1.0e-63 248.4 197 59.9
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 7.4e-62 242.3 166 69.9
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 1.3e-61 241.5 188 67.0
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 2.6e-59 233.8 160 67.5
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 2.9e-58 230.3 223 54.3
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 1.9e-57 227.6 252 52.4
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 5.5e-57 226.1 265 49.1
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 3.6e-56 223.4 161 62.7
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 8.0e-56 222.2 243 51.9
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.7e-53 214.5 169 71.6
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 4.8e-53 213.0 349 37.8
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 5.0e-50 203.0 175 58.9
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 1.5e-46 191.4 118 74.6
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 8.2e-45 185.7 126 69.0
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 6.5e-42 176.0 378 33.1
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.3e-39 167.5 128 60.2
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 1.1e-36 158.7 382 30.9
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 4.1e-36 156.8 126 60.3
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 1.0e-31 142.1 239 38.9
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 1.0e-31 142.1 239 38.9
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 4.0e-31 140.2 115 66.1
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-30 138.3 177 47.5
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 7.5e-30 136.0 87 73.6
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 7.5e-30 136.0 138 51.4
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.8e-28 131.3 156 52.6
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 2.7e-27 127.5 65 96.9
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.0e-26 123.2 111 61.3
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.5e-25 121.7 162 45.1
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 4.0e-23 113.6 92 62.0
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 1.2e-22 112.1 316 25.9
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 2.9e-21 107.5 87 60.9
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 6.4e-21 106.3 65 73.8
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 8.3e-21 105.9 89 55.1
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 6.0e-19 99.8 68 73.5
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 1.7e-18 98.2 267 33.3
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 5.2e-15 86.7 71 56.3
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 1.2e-14 85.5 130 45.4
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 2.6e-14 84.3 193 35.2
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.4e-14 84.0 54 72.2
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 3.7e-13 80.5 82 56.1
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-11 73.2 84 51.2
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-11 73.2 84 51.2
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-11 73.2 84 51.2
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-11 73.2 84 51.2
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.0e-10 70.1 78 52.6
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 5.0e-10 70.1 67 50.7
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 5.0e-10 70.1 130 38.5
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 8.6e-10 69.3 76 53.9
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 7.3e-09 66.2 53 54.7
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 7.3e-09 66.2 53 54.7
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.1e-08 64.7 51 66.7
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 2.1e-08 64.7 53 52.8
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 1.1e-07 62.4 44 56.8
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 1.8e-07 61.6 78 50.0
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 8.9e-07 59.3 39 71.8
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 3.4e-06 57.4 74 47.3
Glyma.03G124801 Glycine max HOM05D005784 ORTHO05D004556 4.4e-06 57.0 40 72.5
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 7.5e-06 56.2 36 66.7
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 9.9e-06 55.8 62 48.4


User provided reference genes

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