Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 0.0e+00 1547.7 813 100.0
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 0.0e+00 1241.1 928 74.5
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 0.0e+00 1155.2 936 69.8
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 0.0e+00 1128.6 954 67.9
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 2.4e-281 972.2 881 61.1
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 3.5e-280 968.4 881 60.8
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.8e-277 958.7 880 60.7
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.6e-267 925.6 885 57.9
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 9.2e-265 917.1 876 58.8
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 6.0e-264 914.4 889 57.8
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.0e-263 913.7 880 58.6
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 8.0e-261 904.0 878 57.1
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 9.6e-230 800.8 882 51.2
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 2.1e-229 799.7 879 50.2
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.5e-227 792.0 874 50.8
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 5.5e-217 758.4 919 47.7
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.3e-215 753.1 884 48.3
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.0e-215 752.7 863 48.7
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 6.9e-212 741.5 877 47.9
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 4.2e-209 732.3 877 47.2
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 9.3e-209 731.1 885 46.8
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 4.6e-208 728.8 885 46.8
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.3e-207 726.5 877 46.3
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.9e-206 723.4 886 46.5
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.5e-206 723.0 834 48.7
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 4.8e-205 718.8 851 47.8
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.4e-204 717.2 851 47.5
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 4.5e-203 712.2 868 46.3
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 5.5e-201 705.3 839 47.0
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-200 703.7 876 45.9
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 4.6e-200 702.2 876 44.5
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.4e-199 700.7 882 45.9
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.3e-199 699.9 873 45.5
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.9e-199 699.1 876 44.3
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 4.3e-198 695.7 870 45.7
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 5.7e-198 695.3 877 45.4
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.2e-197 693.3 876 45.2
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 8.2e-197 691.4 876 45.0
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.8e-194 682.6 881 45.4
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 6.5e-194 681.8 879 45.5
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.4e-193 680.6 878 43.3
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.4e-193 680.6 848 46.6
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.9e-193 680.2 874 45.2
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.8e-191 673.7 874 44.7
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.3e-191 673.3 876 44.6
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 3.9e-191 672.5 880 44.4
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 3.9e-191 672.5 757 49.9
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 5.7e-190 668.7 872 43.9
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.7e-190 668.7 866 45.0
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 5.7e-190 668.7 883 44.8
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.7e-189 667.2 845 45.6
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 2.2e-189 666.8 910 43.7
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 5.5e-185 652.1 835 45.7
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.1e-184 650.2 772 48.4
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 1.5e-182 644.0 873 42.2
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 5.7e-182 642.1 883 43.5
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 9.7e-182 641.3 878 42.8
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.2e-181 640.2 774 46.4
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.4e-180 637.5 876 43.2
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 3.1e-180 636.3 912 41.9
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 7.0e-180 635.2 866 44.6
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 5.0e-178 629.0 884 42.8
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.7e-176 623.2 824 44.9
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.7e-174 615.5 877 41.6
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 6.3e-173 612.1 860 42.7
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.1e-172 611.3 839 41.8
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 4.1e-172 609.4 906 42.4
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 5.9e-171 605.5 835 42.6
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 7.7e-171 605.1 835 42.6
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.0e-170 604.7 904 40.0
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.9e-170 603.2 863 42.9
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 5.5e-169 599.0 828 43.1
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.6e-168 596.3 836 41.9
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 4.7e-168 595.9 836 41.9
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.7e-168 595.9 836 41.7
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.0e-168 595.1 845 40.7
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.0e-167 594.7 880 41.6
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 1.8e-167 594.0 835 42.5
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.8e-167 594.0 864 41.3
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.2e-166 591.3 838 39.9
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.5e-166 590.9 866 42.6
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.0e-166 590.5 873 42.4
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 4.8e-165 585.9 823 41.9
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 6.3e-165 585.5 822 43.1
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.4e-164 584.3 823 42.8
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.8e-164 583.9 859 42.0
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.6e-163 580.9 848 41.4
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.7e-163 580.1 858 41.4
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.7e-162 577.4 822 42.3
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 2.5e-161 573.5 823 40.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.5e-161 571.6 835 42.3
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 3.6e-160 569.7 825 40.7
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.3e-159 567.0 830 41.9
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 4.9e-157 559.3 942 38.2
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.4e-156 557.8 863 39.3
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.4e-151 541.2 784 39.2
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 4.0e-151 539.7 883 37.7
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 8.3e-149 531.9 838 38.9
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-146 525.0 869 39.6
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.4e-140 502.7 673 44.0
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.0e-138 498.4 608 46.9
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 4.3e-137 493.0 786 40.2
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.8e-135 487.6 707 43.0
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 6.8e-135 485.7 753 38.0
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.7e-133 479.9 521 50.9
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-127 461.8 293 79.5
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 3.5e-123 446.8 1351 28.1
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.8e-119 434.5 1124 30.6
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.5e-113 414.1 853 31.2
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.8e-112 410.6 898 31.4
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 2.4e-111 407.5 564 44.0
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.1e-107 394.4 857 32.0
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 7.9e-107 392.5 861 32.3
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 7.9e-107 392.5 590 39.3
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.8e-103 381.3 288 71.5
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.3e-101 375.2 426 48.8
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.7e-101 374.8 463 46.0
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.3e-98 364.4 290 63.4
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 3.3e-97 360.5 709 35.4
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 8.2e-96 355.9 296 62.2
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.9e-92 344.7 280 62.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 7.9e-91 339.3 330 57.3
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 4.8e-88 330.1 291 59.1
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 4.1e-87 327.0 648 34.0
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 4.6e-83 313.5 397 42.8
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 2.3e-82 311.2 390 43.8
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.3e-81 307.4 398 42.7
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.8e-79 301.6 322 50.6
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 2.2e-77 294.7 359 45.1
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.7e-74 283.1 390 43.1
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.0e-73 281.6 278 54.7
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.6e-73 281.2 1059 22.8
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.8e-72 277.7 409 39.9
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 5.3e-71 273.5 410 40.0
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.3e-69 268.9 480 36.2
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 2.1e-67 261.5 169 70.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.4e-66 258.8 542 34.1
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.9e-61 241.1 428 37.1
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 7.2e-60 236.5 179 62.6
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.0e-57 228.4 159 73.0
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 5.4e-55 220.3 270 58.1
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 3.8e-53 214.2 149 73.8
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.2e-51 209.1 230 49.6
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.6e-49 201.4 182 59.3
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 5.7e-49 200.3 261 43.3
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 4.5e-46 190.7 367 37.1
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.7e-45 188.7 136 64.7
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 9.5e-44 183.0 257 39.3
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.0e-38 165.2 158 59.5
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.5e-38 164.5 120 63.3
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.8e-34 152.1 101 70.3
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.1e-34 151.4 333 29.1
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 3.1e-34 151.4 281 37.0
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 3.4e-33 147.9 182 47.3
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 5.8e-33 147.1 298 32.6
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 3.7e-32 144.4 89 74.2
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.9e-31 142.1 242 35.5
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 6.0e-30 137.1 136 49.3
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 6.0e-30 137.1 90 66.7
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.6e-27 129.0 79 73.4
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 4.7e-27 127.5 80 75.0
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.3e-24 119.4 81 64.2
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 2.5e-20 105.1 100 61.0
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 1.6e-19 102.4 182 38.5
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.6e-19 101.3 99 54.5
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 1.2e-17 96.3 130 38.5
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.9e-16 91.7 132 40.2
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.7e-16 91.3 60 71.7
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 7.1e-15 87.0 89 59.6
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.6e-14 85.9 88 48.9
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 7.8e-14 83.6 134 40.3
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 1.3e-13 82.8 91 41.8
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.6e-11 74.7 103 37.9
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 4.7e-11 74.3 93 44.1
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.7e-11 74.3 100 41.0
arahy.Tifrunner.gnm1.ann1.QWX0VP Arachis hypogaea HOM05D003469 ORTHO05D004084 1.4e-10 72.8 160 34.4
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 6.8e-10 70.5 157 33.8
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.2e-09 69.7 50 64.0
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.5e-06 58.2 58 48.3
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 7.8e-06 57.0 78 43.6


User provided reference genes

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