Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 6.2e-142 507.7 301 100.0
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 1.0e-112 410.6 302 75.5
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 5.7e-95 351.7 308 71.1
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 7.7e-92 341.3 309 62.1
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 8.2e-86 321.2 309 58.6
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 3.2e-82 309.3 308 59.1
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 2.7e-81 306.2 308 60.4
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 1.0e-80 304.3 306 55.9
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 4.4e-79 298.9 309 55.0
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 5.7e-79 298.5 316 54.7
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 2.2e-78 296.6 314 53.5
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 2.2e-78 296.6 312 53.2
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 2.8e-78 296.2 315 53.0
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 6.3e-78 295.0 305 55.1
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 1.4e-77 293.9 315 53.7
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 1.8e-77 293.5 309 52.8
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 2.4e-77 293.1 311 53.1
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 3.1e-77 292.7 306 53.6
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 9.1e-77 291.2 306 53.6
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 9.1e-77 291.2 306 52.6
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 2.7e-76 289.7 311 54.0
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 2.7e-76 289.7 319 53.0
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 3.5e-76 289.3 319 53.0
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 7.7e-76 288.1 305 53.8
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 7.7e-76 288.1 306 53.9
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 1.0e-75 287.7 311 53.1
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 3.8e-75 285.8 306 53.6
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 8.6e-75 284.6 313 53.4
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 1.1e-74 284.3 310 52.9
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 1.5e-74 283.9 310 52.9
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 1.9e-74 283.5 312 52.2
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 7.2e-74 281.6 319 52.4
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 9.5e-74 281.2 313 51.4
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 9.5e-74 281.2 311 52.1
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 1.2e-73 280.8 306 52.3
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.6e-73 280.4 306 50.7
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 3.6e-73 279.3 309 55.0
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 3.6e-73 279.3 313 51.1
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 3.6e-73 279.3 313 51.8
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 3.6e-73 279.3 306 51.6
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 2.3e-72 276.6 309 51.8
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 3.0e-72 276.2 307 53.4
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 4.0e-72 275.8 309 51.8
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 4.0e-72 275.8 309 51.8
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 4.0e-72 275.8 308 51.3
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 1.2e-71 274.2 315 50.2
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 1.2e-71 274.2 318 49.7
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 1.2e-71 274.2 311 52.4
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 1.5e-71 273.9 311 50.5
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 1.5e-71 273.9 298 54.0
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 2.0e-71 273.5 314 49.7
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 2.0e-71 273.5 310 51.6
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 2.6e-71 273.1 310 51.9
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 4.4e-71 272.3 311 50.2
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 5.7e-71 271.9 306 59.5
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 7.5e-71 271.6 311 51.4
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 9.8e-71 271.2 302 52.0
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 1.3e-70 270.8 306 50.0
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 1.7e-70 270.4 315 49.5
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 1.7e-70 270.4 310 51.3
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 1.7e-70 270.4 309 51.5
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 2.8e-70 269.6 308 50.6
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 3.7e-70 269.2 284 52.8
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 6.3e-70 268.5 306 49.3
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 6.3e-70 268.5 312 49.4
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 6.3e-70 268.5 311 50.2
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 1.8e-69 266.9 280 52.1
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 2.4e-69 266.5 319 50.8
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 4.1e-69 265.8 312 50.0
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 1.2e-68 264.2 282 52.1
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.2e-68 264.2 307 51.5
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 1.2e-68 264.2 311 56.3
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.6e-68 263.8 220 70.0
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 5.9e-68 261.9 311 50.2
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.0e-67 261.2 299 52.5
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 2.9e-67 259.6 273 54.2
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 5.6e-66 255.4 308 52.6
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 9.5e-66 254.6 314 50.0
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 1.6e-65 253.8 290 50.3
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 2.8e-65 253.1 304 51.0
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-65 252.7 306 48.0
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 1.4e-64 250.8 312 48.7
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 3.0e-64 249.6 310 49.4
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 7.5e-63 245.0 313 49.2
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 1.3e-62 244.2 308 48.1
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 2.2e-62 243.4 310 47.4
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 4.9e-62 242.3 271 48.0
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 8.3e-62 241.5 306 47.4
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 1.1e-61 241.1 309 46.6
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.4e-61 240.7 271 48.0
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 4.1e-61 239.2 139 87.8
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 9.5e-58 228.0 302 44.7
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 3.6e-57 226.1 306 43.8
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 4.6e-52 209.1 307 42.7
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 8.9e-48 194.9 277 44.4
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 1.4e-45 187.6 139 70.5
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 2.6e-39 166.8 317 39.1
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 1.7e-35 154.1 128 61.7
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 8.7e-35 151.8 300 33.7
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 3.3e-34 149.8 291 35.4
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 4.2e-29 132.9 309 33.3
Glyma.16G045802 Glycine max HOM05D007245 ORTHO05D009049 3.5e-28 129.8 144 56.9
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 7.8e-28 128.6 302 30.1
Psat0s2487g0040 Pisum sativum HOM05D007245 ORTHO05D009049 9.0e-24 115.2 73 83.6
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 3.8e-22 109.8 297 31.0
GSVIVG01032953001 Vitis vinifera HOM05D007245 ORTHO05D009049 7.1e-21 105.5 148 47.3
Solyc05g008590.4 Solanum lycopersicum HOM05D007245 ORTHO05D009049 2.1e-20 104.0 129 47.3
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 8.1e-17 92.0 286 27.3
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 1.8e-16 90.9 269 28.3
Zm00001eb113550 Zea mays HOM05D007245 ORTHO05D009049 5.3e-16 89.4 132 40.2
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 9.0e-16 88.6 254 27.2
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 2.6e-15 87.0 252 27.8
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 2.6e-15 87.0 252 27.0
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 5.8e-15 85.9 266 25.6
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 9.9e-15 85.1 267 25.8
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 9.9e-15 85.1 265 27.5
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 6.4e-14 82.4 267 26.2
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 6.4e-14 82.4 192 32.8
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 8.4e-14 82.0 268 26.5
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.1e-13 81.6 252 25.8
Os11g0534100 Oryza sativa ssp. japonica HOM05D007245 ORTHO05D009049 1.9e-13 80.9 134 35.1
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 2.5e-13 80.5 268 28.4
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 4.2e-13 79.7 97 40.2
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 9.3e-13 78.6 268 25.4
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 9.3e-13 78.6 215 28.4
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 4.6e-12 76.3 268 26.9
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 4.6e-12 76.3 268 25.0
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 4.6e-12 76.3 272 25.4
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 6.0e-12 75.9 278 24.5
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 7.9e-12 75.5 266 26.7
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 1.3e-11 74.7 268 25.7
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 2.3e-11 73.9 268 23.9
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 3.0e-11 73.6 273 31.5
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 5.1e-11 72.8 266 27.1
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 8.7e-11 72.0 268 25.4
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 8.7e-11 72.0 266 25.2
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 8.7e-11 72.0 268 25.0
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.1e-10 71.6 276 27.2
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 1.1e-10 71.6 268 26.9
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 1.5e-10 71.2 268 25.4
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 1.5e-10 71.2 288 24.0
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 1.9e-10 70.9 268 25.4
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 2.5e-10 70.5 265 24.5
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 4.3e-10 69.7 267 23.2
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 4.3e-10 69.7 264 23.9
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 9.6e-10 68.6 265 26.8
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 9.6e-10 68.6 96 35.4
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 9.6e-10 68.6 267 23.2
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 1.3e-09 68.2 257 24.5
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 1.3e-09 68.2 266 24.8
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 1.3e-09 68.2 264 25.0
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 1.6e-09 67.8 264 23.1
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 2.1e-09 67.4 98 39.8
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 6.2e-09 65.9 268 25.7
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 1.4e-08 64.7 99 37.4
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 1.8e-08 64.3 97 33.0
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 3.1e-08 63.5 268 23.5
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 5.3e-08 62.8 263 23.2
Mapoly0090s0038 Marchantia polymorpha HOM05D001193 ORTHO05D001016 6.9e-08 62.4 276 22.8
Phvul.002G131900 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 6.9e-08 62.4 291 25.1
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.2e-07 61.6 241 24.9
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 1.5e-07 61.2 231 22.9
arahy.Tifrunner.gnm1.ann1.0E5TT3 Arachis hypogaea HOM05D001193 ORTHO05D001016 2.6e-07 60.5 282 23.4
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 3.4e-07 60.1 97 33.0
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 3.4e-07 60.1 261 22.6
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 4.5e-07 59.7 282 23.4
Lj2g0013531 Lotus japonicus HOM05D001193 ORTHO05D001016 5.8e-07 59.3 282 23.4
Phvul.003G272800 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 5.8e-07 59.3 297 25.3
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 5.8e-07 59.3 94 38.3
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 7.6e-07 58.9 265 26.4
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 1.7e-06 57.8 265 26.0
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.7e-06 57.8 272 25.7
Aa31LG2G13870 Aethionema arabicum HOM05D001193 ORTHO05D001016 2.2e-06 57.4 282 23.0
arahy.Tifrunner.gnm1.ann1.T5VF9E Arachis hypogaea HOM05D001193 ORTHO05D001016 2.2e-06 57.4 277 22.7
SMO329G0094 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 2.2e-06 57.4 303 25.1
PSO135G0199 Papaver somniferum HOM05D001193 ORTHO05D001016 2.9e-06 57.0 226 24.3
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 3.8e-06 56.6 268 22.4
PGSC0003DMG400006222 Solanum tuberosum HOM05D001193 ORTHO05D001016 3.8e-06 56.6 269 25.3
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 4.9e-06 56.2 271 21.8
VMungo1215G0728 Vigna mungo HOM05D001193 ORTHO05D001016 8.4e-06 55.5 291 23.4


User provided reference genes

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