Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31662 Trifolium pratense HOM05D000865 ORTHO05D000739 1.5e-158 562.8 275 100.0
Psat3g092760 Pisum sativum HOM05D000865 ORTHO05D000739 9.8e-102 374.0 276 70.3
Ca_08232_v3 Cicer arietinum L. HOM05D000865 ORTHO05D000739 7.0e-100 367.9 273 70.3
Medtr7g084680 Medicago truncatula HOM05D000865 ORTHO05D000739 3.4e-94 349.0 274 68.6
Lj1g0006851 Lotus japonicus HOM05D000865 ORTHO05D000739 1.3e-77 293.9 282 59.9
VMungo1383G1384 Vigna mungo HOM05D000865 ORTHO05D000739 5.1e-74 282.0 284 57.0
Glyma.16G045500 Glycine max HOM05D000865 ORTHO05D000739 2.4e-71 273.1 285 54.0
Phvul.001G098700 Phaseolus vulgaris HOM05D000865 ORTHO05D000739 8.4e-69 264.6 292 53.8
Lalb_Chr24g0402961 Lupinus albus HOM05D000865 ORTHO05D000739 2.7e-51 206.5 231 51.1
COL.COLO4_13402 Corchorus olitorius HOM05D004665 ORTHO05D006264 8.7e-34 148.3 170 47.1
Thecc.04G051400 Theobroma cacao HOM05D000865 ORTHO05D000739 7.4e-33 145.2 282 37.9
Duzib187G0555 Durio zibethinus HOM05D000865 ORTHO05D000739 4.8e-32 142.5 217 40.1
Ciclev10017662m.g Citrus clementina HOM05D000865 ORTHO05D000739 1.4e-31 141.0 234 37.6
PGR142G1530 Punica granatum HOM05D000865 ORTHO05D000739 1.4e-31 141.0 269 39.0
QL02p068256 Quercus lobata HOM05D000865 ORTHO05D000739 2.0e-30 137.1 169 43.2
TAR622G0532 Trochodendron aralioides HOM05D000865 ORTHO05D000739 2.6e-30 136.7 173 42.2
Sabra13G0092400 Salix brachista HOM05D000865 ORTHO05D000739 4.5e-30 136.0 187 40.6
Manes.04G097000 Manihot esculenta HOM05D000865 ORTHO05D000739 1.7e-29 134.0 231 36.4
Gohir.D03G050400 Gossypium hirsutum HOM05D000865 ORTHO05D000739 1.9e-28 130.6 221 37.6
Gorai.003G052000 Gossypium raimondii HOM05D000865 ORTHO05D000739 2.5e-28 130.2 191 41.4
Nn4g22075 Nelumbo nucifera HOM05D000865 ORTHO05D000739 2.5e-28 130.2 235 39.1
Gohir.A02G140000 Gossypium hirsutum HOM05D000865 ORTHO05D000739 4.2e-28 129.4 191 41.4
Eucgr.I01570 Eucalyptus grandis HOM05D000865 ORTHO05D000739 5.5e-28 129.0 277 32.9
EL10Ac6g13906 Beta vulgaris HOM05D000865 ORTHO05D000739 7.2e-28 128.6 144 52.1
RcHm_v2.0_Chr4g0428431 Rosa chinensis HOM05D000865 ORTHO05D000739 9.4e-28 128.3 226 37.6
Manes.08G099500 Manihot esculenta HOM05D000865 ORTHO05D000739 1.2e-27 127.9 150 44.7
Thecc.01G239900 Theobroma cacao HOM05D000865 ORTHO05D000739 1.2e-27 127.9 155 47.1
Haze_14985 Corylus avellana HOM05D000865 ORTHO05D000739 2.1e-27 127.1 145 45.5
Atru.chr12.1470 Acer truncatum HOM05D000865 ORTHO05D000739 2.7e-27 126.7 239 35.1
Duzib147G1335 Durio zibethinus HOM05D000865 ORTHO05D000739 6.1e-27 125.6 157 45.2
Cfa009470 Carpinus fangiana HOM05D000865 ORTHO05D000739 1.0e-26 124.8 246 37.0
Ciclev10028983m.g Citrus clementina HOM05D000865 ORTHO05D000739 8.8e-26 121.7 240 34.2
FAN12G3989 Fragaria x ananassa HOM05D000865 ORTHO05D000739 8.8e-26 121.7 224 36.6
FvH4_4g22200 Fragaria vesca HOM05D000865 ORTHO05D000739 1.1e-25 121.3 224 36.2
Cfa007138 Carpinus fangiana HOM05D000865 ORTHO05D000739 2.0e-25 120.6 153 43.1
Gohir.1Z049522 Gossypium hirsutum HOM05D000865 ORTHO05D000739 2.5e-25 120.2 156 46.2
Gorai.012G044800 Gossypium raimondii HOM05D000865 ORTHO05D000739 2.5e-25 120.2 156 46.2
Hma1.2p1_0738F.1_g210930 Hydrangea macrophylla HOM05D000865 ORTHO05D000739 2.5e-25 120.2 153 40.5
QL03p048365 Quercus lobata HOM05D000865 ORTHO05D000739 2.5e-25 120.2 146 42.5
Prupe.1G211700 Prunus persica HOM05D000865 ORTHO05D000739 4.3e-25 119.4 248 35.1
Sc09g0007740 Simmondsia chinensis HOM05D000865 ORTHO05D000739 7.4e-25 118.6 300 34.0
Cpa.g.sc70.37 Carica papaya HOM05D000865 ORTHO05D000739 1.3e-24 117.9 236 32.6
MD16G1144500 Malus domestica HOM05D000865 ORTHO05D000739 1.3e-24 117.9 287 34.8
TWI60G0277 Tripterygium wilfordii HOM05D000865 ORTHO05D000739 1.3e-24 117.9 196 39.3
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 2.2e-24 117.1 241 34.9
AUR62032535 Chenopodium quinoa HOM05D000865 ORTHO05D000739 3.7e-24 116.3 149 48.3
MD17G1004000 Malus domestica HOM05D000865 ORTHO05D000739 6.3e-24 115.5 150 40.7
Actinidia19542 Actinidia chinensis HOM05D004665 ORTHO05D006264 1.4e-23 114.4 153 41.8
Sabra03G0116600 Salix brachista HOM05D000865 ORTHO05D000739 1.4e-23 114.4 297 28.3
Potri.013G107175 Populus trichocarpa HOM05D000865 ORTHO05D000739 4.1e-23 112.8 197 34.5
Gohir.A05G376200 Gossypium hirsutum HOM05D000865 ORTHO05D000739 6.9e-23 112.1 156 44.9
Potri.003G160400 Populus trichocarpa HOM05D000865 ORTHO05D000739 9.1e-23 111.7 270 29.3
PGR102G0313 Punica granatum HOM05D000865 ORTHO05D000739 1.5e-22 110.9 150 40.0
Potri.001G070400 Populus trichocarpa HOM05D000865 ORTHO05D000739 2.0e-22 110.5 277 29.6
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 4.5e-22 109.4 195 37.9
PSO017G3240 Papaver somniferum HOM05D000865 ORTHO05D000739 5.9e-22 109.0 172 40.1
TWI36G0990 Tripterygium wilfordii HOM05D000865 ORTHO05D000739 5.9e-22 109.0 152 41.4
PSO478G4973 Papaver somniferum HOM05D000865 ORTHO05D000739 1.7e-21 107.5 171 39.8
CSS0023807 Camellia sinensis var. sinensis HOM05D000865 ORTHO05D000739 2.2e-21 107.1 195 33.3
COL.COLO4_06613 Corchorus olitorius HOM05D000865 ORTHO05D000739 2.9e-21 106.7 156 41.0
Manes.11G073400 Manihot esculenta HOM05D000865 ORTHO05D000739 6.5e-21 105.5 141 41.8
Ah.03g136530 Amaranthus hybridus HOM05D000865 ORTHO05D000739 8.5e-21 105.1 226 35.0
Aqoxy5G02998 Aquilegia oxysepala HOM05D000865 ORTHO05D000739 3.2e-20 103.2 159 40.3
CiPaw.05G098600 Carya illinoinensis HOM05D000865 ORTHO05D000739 9.4e-20 101.7 273 30.0
TWI18G1208 Tripterygium wilfordii HOM05D000865 ORTHO05D000739 9.4e-20 101.7 165 38.8
CANSAT80G2586 Cannabis sativa HOM05D000865 ORTHO05D000739 6.1e-19 99.0 223 30.5
Atru.chr6.2728 Acer truncatum HOM05D000865 ORTHO05D000739 7.9e-19 98.6 128 40.6
GSVIVG01032950001 Vitis vinifera HOM05D000001 ORTHO05D000003 5.1e-18 95.9 128 43.0
Prupe.3G315200 Prunus persica HOM05D000865 ORTHO05D000739 8.8e-18 95.1 210 33.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.0e-17 94.0 147 36.7
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 7.4e-17 92.0 174 33.9
FAN12G3320 Fragaria x ananassa HOM05D000865 ORTHO05D000739 1.4e-15 87.8 142 38.0
ATR0582G345 Amborella trichopoda HOM05D000865 ORTHO05D000739 4.1e-15 86.3 246 28.5
AUR62017468 Chenopodium quinoa HOM05D004665 ORTHO05D006264 9.1e-15 85.1 113 46.9
Nn5g28013 Nelumbo nucifera HOM05D000865 ORTHO05D000739 9.1e-15 85.1 168 33.9
Eucgr.J01656 Eucalyptus grandis HOM05D000865 ORTHO05D000739 3.5e-14 83.2 154 33.8
HPP92_024383 Vanilla planifolia HOM05D000865 ORTHO05D000739 4.5e-14 82.8 150 34.7
Eucgr.J01658 Eucalyptus grandis HOM05D000865 ORTHO05D000739 1.0e-13 81.6 158 33.5
TAR633G1600 Trochodendron aralioides HOM05D000865 ORTHO05D000739 2.2e-13 80.5 143 36.4
CiPaw.02G000100 Carya illinoinensis HOM05D000865 ORTHO05D000739 6.5e-13 79.0 152 34.2
Sc17g0003320 Simmondsia chinensis HOM05D000865 ORTHO05D000739 6.5e-13 79.0 186 30.1
Eucgr.J01654 Eucalyptus grandis HOM05D000865 ORTHO05D000739 1.1e-12 78.2 154 33.1
Dinv29770 Davidia involucrata HOM05D000865 ORTHO05D000739 1.5e-12 77.8 168 32.1
HanXRQChr03g0080821 Helianthus annuus HOM05D000865 ORTHO05D000739 3.2e-12 76.6 290 28.6
Psat4g027040 Pisum sativum HOM05D000865 ORTHO05D000739 3.2e-12 76.6 177 31.6
Psat4g027080 Pisum sativum HOM05D000865 ORTHO05D000739 4.2e-12 76.3 234 30.3
Actinidia37708 Actinidia chinensis HOM05D000865 ORTHO05D000739 5.5e-12 75.9 135 41.5
Nn1g00545 Nelumbo nucifera HOM05D000865 ORTHO05D000739 5.5e-12 75.9 109 40.4
DCAR_024563 Daucus carota HOM05D000865 ORTHO05D000739 7.2e-12 75.5 171 30.4
Eucgr.J01655 Eucalyptus grandis HOM05D000865 ORTHO05D000739 7.2e-12 75.5 145 32.4
Actinidia14306 Actinidia chinensis HOM05D000865 ORTHO05D000739 9.4e-12 75.1 149 36.9
HanXRQChr03g0080801 Helianthus annuus HOM05D000865 ORTHO05D000739 1.6e-11 74.3 298 28.5
MBI19_g13126_MAGBIO Magnolia biondii HOM05D000865 ORTHO05D000739 1.6e-11 74.3 146 33.6
Aqoxy2G03021 Aquilegia oxysepala HOM05D000865 ORTHO05D000739 2.1e-11 73.9 143 32.2
Solyc01g099370.3 Solanum lycopersicum HOM05D000865 ORTHO05D000739 2.1e-11 73.9 143 36.4
PGSC0003DMG400024703 Solanum tuberosum HOM05D000865 ORTHO05D000739 2.1e-11 73.9 141 35.5
GSVIVG01031119001 Vitis vinifera HOM05D000865 ORTHO05D000739 2.1e-11 73.9 143 34.3
Rhsim02G0010800 Rhododendron simsii HOM05D000407 ORTHO05D000739 2.7e-11 73.6 251 31.1
Sopen01g042930 Solanum pennellii HOM05D000865 ORTHO05D000739 2.7e-11 73.6 143 36.4
Cc00_g10550 Coffea canephora HOM05D000865 ORTHO05D000739 6.1e-11 72.4 146 33.6
QL12p030209 Quercus lobata HOM05D000865 ORTHO05D000739 8.0e-11 72.0 145 31.0
Actinidia00029 Actinidia chinensis HOM05D000865 ORTHO05D000739 1.0e-10 71.6 142 35.2
Duzib151G1190 Durio zibethinus HOM05D000865 ORTHO05D000739 1.4e-10 71.2 237 28.7
Hma1.2p1_0402F.1_g145130 Hydrangea macrophylla HOM05D000865 ORTHO05D000739 1.4e-10 71.2 241 27.0
EL10Ac3g06587 Beta vulgaris HOM05D000865 ORTHO05D000739 2.3e-10 70.5 145 29.7
CSS0011101 Camellia sinensis var. sinensis HOM05D000865 ORTHO05D000739 2.3e-10 70.5 142 33.1
Duzib177G0415 Durio zibethinus HOM05D000865 ORTHO05D000739 2.3e-10 70.5 144 33.3
CiPaw.01G149500 Carya illinoinensis HOM05D000865 ORTHO05D000739 3.0e-10 70.1 232 27.6
Rhsim02G0010900 Rhododendron simsii HOM05D000865 ORTHO05D000739 3.0e-10 70.1 227 30.0
CiPaw.02G083700 Carya illinoinensis HOM05D000865 ORTHO05D000739 4.0e-10 69.7 143 32.9
COL.COLO4_10495 Corchorus olitorius HOM05D000865 ORTHO05D000739 4.0e-10 69.7 144 31.2
TAR636G2581 Trochodendron aralioides HOM05D000865 ORTHO05D000739 4.0e-10 69.7 144 34.0
Actinidia25058 Actinidia chinensis HOM05D000865 ORTHO05D000739 5.2e-10 69.3 141 32.6
HPP92_026256 Vanilla planifolia HOM05D000865 ORTHO05D000739 5.2e-10 69.3 168 29.2
Oeu040760.1 Olea europaea HOM05D000865 ORTHO05D000739 6.7e-10 68.9 146 32.2
Medtr4g119780 Medicago truncatula HOM05D000865 ORTHO05D000739 1.5e-09 67.8 144 31.9
vmacro15241 Vaccinium macrocarpon HOM05D000865 ORTHO05D000739 1.5e-09 67.8 218 28.0
MBI18_g14077_MAGBIO Magnolia biondii HOM05D000865 ORTHO05D000739 2.0e-09 67.4 150 29.3
MBI19_g00436_MAGBIO Magnolia biondii HOM05D000865 ORTHO05D000739 2.0e-09 67.4 146 33.6
Manes.08G119200 Manihot esculenta HOM05D000865 ORTHO05D000739 2.0e-09 67.4 146 32.9
Thecc.04G283200 Theobroma cacao HOM05D000865 ORTHO05D000739 2.0e-09 67.4 247 27.9
Zm00001eb197960 Zea mays HOM05D000865 ORTHO05D000739 2.6e-09 67.0 148 33.1
Carub.0003s1626 Capsella rubella HOM05D000865 ORTHO05D000739 3.3e-09 66.6 244 25.4
Haze_01218 Corylus avellana HOM05D000865 ORTHO05D000739 3.3e-09 66.6 145 33.8
QL06p008669 Quercus lobata HOM05D000865 ORTHO05D000739 3.3e-09 66.6 173 29.5
Gohir.D11G309700 Gossypium hirsutum HOM05D000865 ORTHO05D000739 4.4e-09 66.2 145 29.7
Gorai.007G341700 Gossypium raimondii HOM05D000865 ORTHO05D000739 4.4e-09 66.2 145 29.7
QL12p026729 Quercus lobata HOM05D000865 ORTHO05D000739 4.4e-09 66.2 145 29.7
Sc19g0005110 Simmondsia chinensis HOM05D000865 ORTHO05D000739 4.4e-09 66.2 245 26.1
Peaxi162Scf00037g00096 Petunia axillaris HOM05D000865 ORTHO05D000739 5.7e-09 65.9 145 33.8
Oeu051839.1 Olea europaea HOM05D000865 ORTHO05D000739 7.5e-09 65.5 235 28.5
Gohir.D12G010000 Gossypium hirsutum HOM05D000865 ORTHO05D000739 9.7e-09 65.1 237 24.9
Gorai.008G010000 Gossypium raimondii HOM05D000865 ORTHO05D000739 9.7e-09 65.1 237 24.9
QL12p030197 Quercus lobata HOM05D000865 ORTHO05D000739 9.7e-09 65.1 145 29.7
Migut.G00172 Erythranthe guttata HOM05D000865 ORTHO05D000739 1.3e-08 64.7 174 32.8
vmacro15240 Vaccinium macrocarpon HOM05D000865 ORTHO05D000739 1.3e-08 64.7 184 29.9
Actinidia27047 Actinidia chinensis HOM05D000865 ORTHO05D000739 1.7e-08 64.3 141 31.2
Duzib052G0438 Durio zibethinus HOM05D000865 ORTHO05D000739 1.7e-08 64.3 146 30.1
Os02g0518000 Oryza sativa ssp. japonica HOM05D000865 ORTHO05D000739 1.7e-08 64.3 151 31.8
Thecc.05G311200 Theobroma cacao HOM05D000865 ORTHO05D000739 1.7e-08 64.3 144 29.9
VMungo1309G0029 Vigna mungo HOM05D000865 ORTHO05D000739 1.7e-08 64.3 223 27.8
Ca_21529_v3 Cicer arietinum L. HOM05D000865 ORTHO05D000739 2.8e-08 63.5 141 31.9
Dinv30790 Davidia involucrata HOM05D000865 ORTHO05D000739 2.8e-08 63.5 141 31.2
AT1G09070 Arabidopsis thaliana HOM05D000865 ORTHO05D000739 4.8e-08 62.8 224 26.3
MBI18_g37256_MAGBIO Magnolia biondii HOM05D000865 ORTHO05D000739 4.8e-08 62.8 94 37.2
Zm00001eb142200 Zea mays HOM05D000865 ORTHO05D000739 4.8e-08 62.8 172 30.2
Actinidia21060 Actinidia chinensis HOM05D000865 ORTHO05D000739 6.3e-08 62.4 160 28.8
Cfa015377 Carpinus fangiana HOM05D000865 ORTHO05D000739 6.3e-08 62.4 172 31.4
MD13G1133900 Malus domestica HOM05D000865 ORTHO05D000739 6.3e-08 62.4 151 31.1
COL.COLO4_13890 Corchorus olitorius HOM05D000865 ORTHO05D000739 1.1e-07 61.6 144 29.2
VMungo1215G3134 Vigna mungo HOM05D000865 ORTHO05D000739 1.1e-07 61.6 143 29.4
CiPaw.08G101400 Carya illinoinensis HOM05D000865 ORTHO05D000739 2.4e-07 60.5 226 26.5
Lj6g0011988 Lotus japonicus HOM05D000865 ORTHO05D000739 2.4e-07 60.5 150 28.0
AL1G19510 Arabidopsis lyrata HOM05D000865 ORTHO05D000739 3.1e-07 60.1 224 25.0
Duzib212G0059 Durio zibethinus HOM05D000865 ORTHO05D000739 3.1e-07 60.1 261 27.2
Rhsim02G0009800 Rhododendron simsii HOM05D000865 ORTHO05D000739 3.1e-07 60.1 142 32.4
AUR62018083 Chenopodium quinoa HOM05D000865 ORTHO05D000739 4.1e-07 59.7 156 30.1
BcaC01g03815 Brassica carinata HOM05D000865 ORTHO05D000739 5.3e-07 59.3 261 24.5
C03p48330 Brassica napus HOM05D000865 ORTHO05D000739 5.3e-07 59.3 261 24.5
BolC3t17113H Brassica oleracea HOM05D000865 ORTHO05D000739 5.3e-07 59.3 261 24.5
Gohir.D09G240700 Gossypium hirsutum HOM05D000865 ORTHO05D000739 5.3e-07 59.3 144 31.2
Gorai.006G263800 Gossypium raimondii HOM05D000865 ORTHO05D000739 5.3e-07 59.3 144 31.2
BraA06t23799Z Brassica rapa HOM05D000865 ORTHO05D000739 7.0e-07 58.9 205 25.4
Cpa.g.sc16.163 Carica papaya HOM05D000865 ORTHO05D000739 7.0e-07 58.9 105 35.2
AT3G16510 Arabidopsis thaliana HOM05D000865 ORTHO05D000739 9.1e-07 58.5 152 27.6
A06p05920 Brassica napus HOM05D000865 ORTHO05D000739 1.6e-06 57.8 143 28.0
Rhsim07G0186400 Rhododendron simsii HOM05D000865 ORTHO05D000739 1.6e-06 57.8 153 29.4
BolC8t52496H Brassica oleracea HOM05D000865 ORTHO05D000739 2.7e-06 57.0 223 26.5
CSS0041676 Camellia sinensis var. sinensis HOM05D020520 ORTHO05D000739 2.7e-06 57.0 100 36.0
AUR62033183 Chenopodium quinoa HOM05D000865 ORTHO05D000739 2.7e-06 57.0 155 31.0
CARHR008960 Cardamine hirsuta HOM05D000865 ORTHO05D000739 3.5e-06 56.6 142 28.9
SGA_v2.0_scaffold91G27990 Striga asiatica HOM05D000865 ORTHO05D000739 3.5e-06 56.6 136 30.9
BcaB07g34125 Brassica carinata HOM05D000865 ORTHO05D000739 4.5e-06 56.2 261 25.7
Cfa015375 Carpinus fangiana HOM05D000865 ORTHO05D000739 4.5e-06 56.2 104 40.4
AUR62008595 Chenopodium quinoa HOM05D000865 ORTHO05D000739 4.5e-06 56.2 156 30.8
Lj4g0012125 Lotus japonicus HOM05D000865 ORTHO05D000739 4.5e-06 56.2 227 25.1
Nn7g36920 Nelumbo nucifera HOM05D000865 ORTHO05D000739 4.5e-06 56.2 63 44.4
Lsat_1_v5_gn_2_72960 Lactuca sativa HOM05D000865 ORTHO05D000739 5.9e-06 55.8 141 31.2
AL3G29330 Arabidopsis lyrata HOM05D000865 ORTHO05D000739 7.7e-06 55.5 283 24.7


User provided reference genes

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