Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 1.6e-79 299.3 145 100.0
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 4.1e-75 284.6 145 94.5
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 6.2e-71 270.8 145 90.3
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.5e-69 266.2 145 87.6
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 2.0e-69 265.8 146 87.7
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 7.5e-69 263.8 145 86.9
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.9e-67 259.2 146 84.9
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 3.2e-67 258.5 145 84.1
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 7.0e-67 257.3 145 84.8
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 1.6e-66 256.1 132 92.4
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.3e-65 253.1 146 83.6
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 4.3e-64 248.1 142 81.7
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.3e-64 248.1 141 81.6
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.2e-63 246.5 148 81.1
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.2e-63 246.5 142 82.4
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.2e-63 246.5 142 80.3
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.6e-63 246.1 142 81.7
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.6e-63 245.0 145 80.7
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.6e-63 245.0 145 80.7
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 6.2e-63 244.2 148 81.1
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 8.1e-63 243.8 141 80.9
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 1.8e-62 242.7 146 80.1
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 8.9e-62 240.4 142 80.3
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.2e-61 240.0 145 78.6
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 2.0e-61 239.2 144 79.2
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.6e-61 238.8 146 78.1
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 4.4e-61 238.0 143 79.7
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 9.9e-61 236.9 147 78.9
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 9.9e-61 236.9 143 79.7
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.3e-60 236.5 144 80.6
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 2.2e-60 235.7 146 77.4
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 6.4e-60 234.2 141 79.4
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.4e-60 234.2 146 76.7
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.1e-59 233.4 142 76.1
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 1.1e-59 233.4 146 77.4
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.1e-59 233.4 146 76.0
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 1.4e-59 233.0 145 79.3
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 1.9e-59 232.6 145 75.9
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.9e-59 232.6 146 78.1
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.4e-59 232.3 144 77.1
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 2.4e-59 232.3 146 75.3
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.2e-59 231.9 153 76.5
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 3.2e-59 231.9 119 88.2
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 4.1e-59 231.5 145 75.9
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.1e-59 231.5 146 76.0
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 7.1e-59 230.7 150 75.3
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 7.1e-59 230.7 146 75.3
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 7.1e-59 230.7 121 87.6
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 9.2e-59 230.3 144 77.1
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 2.1e-58 229.2 148 74.3
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 2.7e-58 228.8 147 74.8
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 3.5e-58 228.4 147 74.1
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 3.5e-58 228.4 147 74.1
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 3.5e-58 228.4 145 74.5
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.5e-58 228.4 133 78.9
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.5e-58 228.4 133 78.9
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.5e-58 228.4 162 72.2
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 4.6e-58 228.0 140 77.1
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.6e-58 228.0 133 78.9
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 4.6e-58 228.0 119 85.7
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 6.0e-58 227.6 146 74.7
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 6.0e-58 227.6 142 76.8
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 6.0e-58 227.6 149 74.5
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 7.8e-58 227.3 151 74.2
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 7.8e-58 227.3 136 78.7
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.3e-57 226.5 145 74.5
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.3e-57 226.5 146 74.0
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.7e-57 226.1 145 75.2
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 1.7e-57 226.1 145 73.8
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.7e-57 226.1 147 74.8
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 2.3e-57 225.7 145 74.5
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 2.3e-57 225.7 145 74.5
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 3.0e-57 225.3 119 84.9
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 5.1e-57 224.6 132 79.5
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 5.1e-57 224.6 119 84.9
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 6.6e-57 224.2 134 76.9
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 6.6e-57 224.2 145 73.8
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.1e-56 223.4 145 73.1
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.1e-56 223.4 136 77.9
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.5e-56 223.0 144 74.3
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.5e-56 223.0 144 74.3
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.9e-56 222.6 136 75.7
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.9e-56 222.6 147 72.8
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.9e-56 222.6 147 74.1
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 4.3e-56 221.5 131 79.4
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.2e-55 219.9 174 63.2
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.2e-55 219.9 174 63.2
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 1.6e-55 219.5 160 68.8
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 3.6e-55 218.4 133 78.2
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 6.2e-55 217.6 150 71.3
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 6.2e-55 217.6 145 69.7
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 6.2e-55 217.6 160 68.8
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.1e-54 216.9 151 71.5
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 1.4e-54 216.5 143 74.8
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 2.4e-54 215.7 140 74.3
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 2.4e-54 215.7 142 72.5
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 2.0e-53 212.6 129 76.7
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.0e-53 212.6 135 74.1
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 3.4e-53 211.8 133 76.7
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 4.4e-53 211.5 142 71.8
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.8e-53 211.1 131 75.6
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 1.7e-52 209.5 132 75.0
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.7e-52 209.5 145 69.7
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 2.2e-52 209.1 112 82.1
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 4.9e-52 208.0 136 73.5
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 1.9e-51 206.1 118 81.4
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.9e-51 206.1 127 79.5
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 1.9e-51 206.1 129 76.0
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 2.4e-51 205.7 149 65.8
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 9.2e-51 203.8 120 77.5
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.2e-50 203.4 144 72.9
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.6e-50 203.0 143 66.4
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 5.6e-48 194.5 105 82.9
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 9.6e-48 193.7 104 82.7
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 9.6e-48 193.7 156 67.3
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 1.2e-47 193.4 141 65.2
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.8e-47 192.2 104 81.7
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.1e-46 190.3 171 60.2
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.4e-46 189.9 113 84.1
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 9.9e-45 183.7 150 64.7
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.4e-43 179.1 154 63.0
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.4e-43 177.9 111 77.5
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 2.7e-42 175.6 91 83.5
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 5.1e-41 171.4 152 63.2
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 8.1e-39 164.1 112 69.6
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 2.0e-37 159.5 84 86.9
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.1e-35 153.7 78 83.3
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.6e-34 149.8 111 71.2
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.3e-32 142.1 99 71.7
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.4e-27 126.7 104 60.6
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 2.7e-26 122.5 61 85.2
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.0e-26 121.3 86 72.1
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.5e-24 116.7 64 78.1
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 4.2e-19 98.6 62 66.1
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 7.9e-18 94.4 52 78.8
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 1.3e-17 93.6 43 86.0
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 4.8e-15 85.1 65 70.8
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.4e-14 83.6 72 68.1
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.3e-14 81.6 47 74.5
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.6e-10 70.1 42 76.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.1e-10 69.7 38 84.2
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.6e-10 68.9 49 67.3
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 6.1e-10 68.2 35 80.0
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.4e-06 57.0 30 73.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 4.1e-06 55.5 41 63.4


User provided reference genes

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