Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 8.3e-32 139.8 73 100.0
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 1.4e-31 139.0 73 98.6
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 5.9e-30 133.7 72 94.4
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 5.9e-30 133.7 72 94.4
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 1.7e-29 132.1 72 93.1
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 3.2e-28 127.9 73 89.0
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 4.2e-28 127.5 72 90.3
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 1.2e-27 125.9 72 87.5
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 1.6e-27 125.6 72 87.5
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 2.1e-27 125.2 72 88.9
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 2.7e-27 124.8 73 87.7
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 4.7e-27 124.0 72 87.5
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 6.1e-27 123.6 72 86.1
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.0e-27 123.2 73 84.9
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 1.0e-26 122.9 72 86.1
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 1.4e-26 122.5 72 87.5
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.3e-26 121.7 71 87.3
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 4.0e-26 120.9 72 84.7
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 4.0e-26 120.9 71 87.3
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 5.2e-26 120.6 71 87.3
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 5.2e-26 120.6 71 85.9
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 5.2e-26 120.6 72 86.1
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 6.8e-26 120.2 71 85.9
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 8.8e-26 119.8 71 87.3
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 1.2e-25 119.4 72 84.7
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 1.2e-25 119.4 71 85.9
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 1.2e-25 119.4 71 85.9
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 1.5e-25 119.0 72 84.7
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 1.5e-25 119.0 72 79.2
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 1.5e-25 119.0 72 79.2
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 2.0e-25 118.6 71 83.1
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 2.0e-25 118.6 71 83.1
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 2.0e-25 118.6 71 83.1
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 2.0e-25 118.6 71 85.9
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 2.6e-25 118.2 72 81.9
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 2.6e-25 118.2 71 83.1
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 2.6e-25 118.2 72 83.3
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 2.6e-25 118.2 71 81.7
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 3.4e-25 117.9 72 81.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.4e-25 117.9 70 88.6
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.4e-25 117.9 70 88.6
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 3.4e-25 117.9 71 84.5
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 3.4e-25 117.9 70 88.6
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 3.4e-25 117.9 71 85.9
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 3.4e-25 117.9 71 84.5
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 4.4e-25 117.5 71 81.7
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 4.4e-25 117.5 72 79.2
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 4.4e-25 117.5 71 81.7
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 5.7e-25 117.1 71 81.7
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 5.7e-25 117.1 71 80.3
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 7.5e-25 116.7 72 80.6
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 9.8e-25 116.3 72 88.9
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 1.3e-24 115.9 70 81.4
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 1.3e-24 115.9 71 83.1
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 1.3e-24 115.9 70 81.4
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 1.7e-24 115.5 70 81.4
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 1.7e-24 115.5 70 81.4
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 1.7e-24 115.5 70 81.4
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 1.7e-24 115.5 70 81.4
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 1.7e-24 115.5 70 81.4
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 1.7e-24 115.5 70 81.4
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 1.7e-24 115.5 73 83.6
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 1.7e-24 115.5 71 80.3
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 2.2e-24 115.2 72 80.6
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 2.2e-24 115.2 73 82.2
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 2.8e-24 114.8 72 77.8
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 2.8e-24 114.8 72 79.2
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 3.7e-24 114.4 72 79.2
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 3.7e-24 114.4 72 79.2
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 3.7e-24 114.4 71 80.3
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 3.7e-24 114.4 71 80.3
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 4.9e-24 114.0 72 79.2
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 4.9e-24 114.0 73 79.5
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 4.9e-24 114.0 72 80.6
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 8.3e-24 113.2 71 81.7
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 1.1e-23 112.8 73 78.1
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 1.1e-23 112.8 72 77.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 1.4e-23 112.5 71 78.9
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.4e-23 112.5 69 81.2
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 1.8e-23 112.1 72 79.2
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 2.4e-23 111.7 73 76.7
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 3.1e-23 111.3 73 76.7
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 3.1e-23 111.3 73 79.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 4.1e-23 110.9 72 77.8
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 4.1e-23 110.9 73 80.8
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 5.4e-23 110.5 73 79.5
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 7.0e-23 110.2 68 82.4
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 1.2e-22 109.4 71 80.3
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 1.6e-22 109.0 65 81.5
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 1.6e-22 109.0 70 77.1
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 2.0e-22 108.6 62 82.3
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 3.5e-22 107.8 72 77.8
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 7.7e-22 106.7 72 72.2
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 7.7e-22 106.7 68 79.4
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 1.7e-21 105.5 72 72.2
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 2.3e-21 105.1 68 76.5
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 3.3e-20 101.3 72 70.8
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 1.5e-17 92.4 72 63.9
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 2.0e-17 92.0 72 61.1
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 1.7e-16 89.0 72 62.5
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.0e-13 77.4 70 58.6
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.0e-13 77.4 70 58.6
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 4.3e-12 74.3 70 52.9
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 1.4e-07 59.3 33 81.8
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.6e-06 55.8 67 46.3


User provided reference genes

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