Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31111 Trifolium pratense HOM05D000604 ORTHO05D004856 1.3e-55 219.5 112 100.0
Ca_08573_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004856 2.0e-29 132.5 103 67.0
Medtr7g094660 Medicago truncatula HOM05D000604 ORTHO05D004856 2.9e-28 128.6 104 65.4
TPR.G6171 Trifolium pratense HOM05D000604 ORTHO05D004856 1.9e-27 125.9 107 63.6
Psat2g006120 Pisum sativum HOM05D000604 ORTHO05D004856 5.5e-27 124.4 105 65.7
TAR371G0160 Trochodendron aralioides HOM05D000604 ORTHO05D004856 1.0e-25 120.2 104 55.8
Manes.13G073400 Manihot esculenta HOM05D000604 ORTHO05D004856 8.8e-25 117.1 101 58.4
arahy.Tifrunner.gnm1.ann1.2H30NS Arachis hypogaea HOM05D000604 ORTHO05D004856 1.5e-24 116.3 87 64.4
arahy.Tifrunner.gnm1.ann1.GY8SZ4 Arachis hypogaea HOM05D000604 ORTHO05D004856 2.0e-24 115.9 87 63.2
PGR119G0174 Punica granatum HOM05D000604 ORTHO05D004856 2.0e-24 115.9 87 63.2
Lj1g0003482 Lotus japonicus HOM05D000604 ORTHO05D004856 3.3e-24 115.2 104 57.7
VMungo0647G0785 Vigna mungo HOM05D000604 ORTHO05D004856 5.7e-24 114.4 101 57.4
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 9.7e-24 113.6 105 52.4
Phvul.001G070900 Phaseolus vulgaris HOM05D000604 ORTHO05D004856 9.7e-24 113.6 87 64.4
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 1.3e-23 113.2 99 56.6
TWI73G0328 Tripterygium wilfordii HOM05D000604 ORTHO05D004856 1.3e-23 113.2 104 54.8
PSO017G6514 Papaver somniferum HOM05D000604 ORTHO05D004856 1.7e-23 112.8 87 56.3
PSO063G6978 Papaver somniferum HOM05D000604 ORTHO05D004856 1.7e-23 112.8 87 56.3
PSO135G0531 Papaver somniferum HOM05D000604 ORTHO05D004856 1.7e-23 112.8 87 56.3
PSO724G1052 Papaver somniferum HOM05D000604 ORTHO05D004856 1.7e-23 112.8 87 56.3
vmacro11016 Vaccinium macrocarpon HOM05D000604 ORTHO05D004856 2.8e-23 112.1 99 52.5
Atru.BG.155.p Acer truncatum HOM05D000604 ORTHO05D004856 3.7e-23 111.7 86 60.5
Cpa.g.sc192.5 Carica papaya HOM05D000604 ORTHO05D004856 3.7e-23 111.7 98 58.2
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 3.7e-23 111.7 99 57.6
Dinv05871 Davidia involucrata HOM05D000604 ORTHO05D004856 3.7e-23 111.7 87 56.3
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 4.8e-23 111.3 101 55.4
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 4.8e-23 111.3 99 55.6
CDE05G3452 Ceratophyllum demersum HOM05D000604 ORTHO05D004856 1.4e-22 109.8 87 58.6
Cfa008710 Carpinus fangiana HOM05D000604 ORTHO05D004856 1.8e-22 109.4 86 59.3
CiPaw.04G077700 Carya illinoinensis HOM05D000604 ORTHO05D004856 1.8e-22 109.4 102 52.0
Haze_11719 Corylus avellana HOM05D000604 ORTHO05D004856 1.8e-22 109.4 86 59.3
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 1.8e-22 109.4 99 55.6
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 2.4e-22 109.0 101 55.4
Gohir.A10G046400 Gossypium hirsutum HOM05D000604 ORTHO05D004856 2.4e-22 109.0 87 58.6
Potri.003G149600 Populus trichocarpa HOM05D000604 ORTHO05D004856 2.4e-22 109.0 87 56.3
Sabra03G0108600 Salix brachista HOM05D000604 ORTHO05D004856 2.4e-22 109.0 106 49.1
ATR0680G299 Amborella trichopoda HOM05D000604 ORTHO05D004856 3.1e-22 108.6 74 68.9
MBI18_g32818_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004856 3.1e-22 108.6 94 55.3
Hma1.2p1_0589F.1_g184700 Hydrangea macrophylla HOM05D000604 ORTHO05D004856 4.1e-22 108.2 100 55.0
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 4.1e-22 108.2 102 50.0
Gohir.D10G047700 Gossypium hirsutum HOM05D000604 ORTHO05D004856 7.0e-22 107.5 99 52.5
Gorai.011G050800 Gossypium raimondii HOM05D000604 ORTHO05D004856 7.0e-22 107.5 99 52.5
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 9.1e-22 107.1 102 49.0
Migut.B01297 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.2e-21 106.7 87 55.2
QL06p028587 Quercus lobata HOM05D000604 ORTHO05D004856 1.2e-21 106.7 74 68.9
Solyc02g081940.3 Solanum lycopersicum HOM05D000604 ORTHO05D004856 1.2e-21 106.7 103 49.5
PGSC0003DMG400007320 Solanum tuberosum HOM05D000604 ORTHO05D004856 1.2e-21 106.7 103 49.5
Nitab4.5_0000632g0160 Nicotiana tabacum HOM05D000604 ORTHO05D004856 1.6e-21 106.3 103 48.5
Prupe.4G106000 Prunus persica HOM05D000604 ORTHO05D004856 1.6e-21 106.3 97 53.6
FAN16G0408 Fragaria x ananassa HOM05D000604 ORTHO05D004856 3.5e-21 105.1 102 48.0
Glyma.09G265100 Glycine max HOM05D000604 ORTHO05D004856 3.5e-21 105.1 74 71.6
Sc24g0002870 Simmondsia chinensis HOM05D000604 ORTHO05D004856 3.5e-21 105.1 87 56.3
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 4.5e-21 104.8 87 55.2
Sp7g18180 Schrenkiella parvula HOM05D000604 ORTHO05D004856 5.9e-21 104.4 87 59.8
FAN25G0854 Fragaria x ananassa HOM05D000604 ORTHO05D004856 1.0e-20 103.6 103 48.5
AT4G19610 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 1.3e-20 103.2 100 53.0
THA.LOC104806210 Tarenaya hassleriana HOM05D000604 ORTHO05D004856 1.7e-20 102.8 105 51.4
FAN21G2591 Fragaria x ananassa HOM05D000604 ORTHO05D004856 2.2e-20 102.4 88 52.3
Glyma.14G154500 Glycine max HOM05D000604 ORTHO05D004856 2.9e-20 102.1 107 54.2
CANSAT35G1381 Cannabis sativa HOM05D000604 ORTHO05D004856 3.8e-20 101.7 75 64.0
HanXRQChr04g0119081 Helianthus annuus HOM05D000604 ORTHO05D004856 3.8e-20 101.7 103 45.6
Aqoxy5G00580 Aquilegia oxysepala HOM05D000604 ORTHO05D004856 5.0e-20 101.3 88 54.5
FvH4_3g11840 Fragaria vesca HOM05D000604 ORTHO05D004856 5.0e-20 101.3 87 52.9
Glyma.13G032300 Glycine max HOM05D000604 ORTHO05D004856 6.5e-20 100.9 105 54.3
Carub.0007s2157 Capsella rubella HOM05D000604 ORTHO05D004856 1.1e-19 100.1 101 52.5
BcaNung01771 Brassica carinata HOM05D000604 ORTHO05D004856 1.9e-19 99.4 98 52.0
AUR62019648 Chenopodium quinoa HOM05D000604 ORTHO05D004856 2.5e-19 99.0 87 52.9
BcaC09g51398 Brassica carinata HOM05D000604 ORTHO05D004856 3.2e-19 98.6 98 51.0
A01p11470 Brassica napus HOM05D000604 ORTHO05D004856 3.2e-19 98.6 104 50.0
C01p13560 Brassica napus HOM05D000604 ORTHO05D004856 3.2e-19 98.6 98 51.0
BolC1t01328H Brassica oleracea HOM05D000604 ORTHO05D004856 3.2e-19 98.6 104 50.0
BraA01t01094Z Brassica rapa HOM05D000604 ORTHO05D004856 3.2e-19 98.6 104 50.0
Migut.M00563 Erythranthe guttata HOM05D000604 ORTHO05D004856 4.2e-19 98.2 92 52.2
Aa31LG6G2170 Aethionema arabicum HOM05D000604 ORTHO05D004856 9.4e-19 97.1 86 55.8
AUR62039584 Chenopodium quinoa HOM05D000604 ORTHO05D004856 9.4e-19 97.1 86 52.3
Migut.M00477 Erythranthe guttata HOM05D000604 ORTHO05D004856 9.4e-19 97.1 92 51.1
Zm00001eb430700 Zea mays HOM05D000604 ORTHO05D004856 9.4e-19 97.1 86 52.3
Zm00001eb442350 Zea mays HOM05D000604 ORTHO05D004856 9.4e-19 97.1 86 52.3
Lsat_1_v5_gn_7_29360 Lactuca sativa HOM05D000604 ORTHO05D004856 2.1e-18 95.9 103 43.7
Hund20696 Selenicereus undatus HOM05D000604 ORTHO05D004856 2.1e-18 95.9 86 53.5
Rhsim02G0169700 Rhododendron simsii HOM05D000604 ORTHO05D004856 2.7e-18 95.5 109 45.0
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 8.0e-18 94.0 86 54.7
SHI01959 Sapria himalayana HOM05D000604 ORTHO05D004856 1.4e-17 93.2 75 57.3
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 8.8e-17 90.5 88 44.3
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 2.0e-16 89.4 77 61.0
AL6G21620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 3.3e-16 88.6 67 64.2
Mapoly0030s0107 Marchantia polymorpha HOM05D000604 ORTHO05D004856 7.5e-16 87.4 92 40.2
AT5G08695 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 1.7e-15 86.3 66 62.1
Cre16.g685200 Chlamydomonas reinhardtii HOM05D000604 ORTHO05D004856 1.7e-15 86.3 86 45.3
Thhalv10024436m.g Eutrema salsugineum HOM05D000604 ORTHO05D004856 2.8e-15 85.5 87 50.6
MCO07G708 Micromonas commoda HOM05D000604 ORTHO05D004856 1.1e-14 83.6 86 39.5
SMO301G0078 Selaginella moellendorffii HOM05D000604 ORTHO05D004856 1.4e-14 83.2 77 44.2
AT5G05720 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 5.9e-13 77.8 77 54.5
Actinidia13225 Actinidia chinensis HOM05D000604 ORTHO05D004856 2.9e-12 75.5 89 44.9
Medtr7g096430 Medicago truncatula HOM05D000604 ORTHO05D028239 6.5e-12 74.3 71 53.5
BraSC37t46166Z Brassica rapa HOM05D000604 ORTHO05D028239 2.7e-10 68.9 66 53.0
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 1.4e-09 66.6 70 51.4
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 3.0e-09 65.5 54 55.6
Migut.O00377 Erythranthe guttata HOM05D000604 ORTHO05D004856 5.2e-09 64.7 37 78.4
MD05G1258800 Malus domestica HOM05D000604 ORTHO05D004856 2.6e-08 62.4 38 76.3
Nn1g08454 Nelumbo nucifera HOM05D000604 ORTHO05D004856 2.6e-08 62.4 70 47.1
EL10Ac2g02981 Beta vulgaris HOM05D000604 ORTHO05D004856 1.7e-07 59.7 35 74.3
ClCG07G014770 Citrullus lanatus HOM05D000604 ORTHO05D004856 3.7e-07 58.5 67 44.8
SalBow8G1358 Salvia bowleyana HOM05D000604 ORTHO05D004856 3.7e-07 58.5 66 43.9
TWI09G0355 Tripterygium wilfordii HOM05D000428 ORTHO05D000582 4.8e-07 58.2 99 35.4
PRCOL_00005574 Prasinoderma coloniale HOM05D000604 ORTHO05D004856 8.3e-07 57.4 95 28.4
MD10G1238300 Malus domestica HOM05D000604 ORTHO05D004856 1.1e-06 57.0 54 46.3
Atru.chr1.3601 Acer truncatum HOM05D000428 ORTHO05D000582 1.8e-06 56.2 65 36.9
Aqoxy5G04327 Aquilegia oxysepala HOM05D001873 ORTHO05D001976 1.8e-06 56.2 76 40.8
Oeu014816.1 Olea europaea HOM05D000604 ORTHO05D004856 2.4e-06 55.8 69 37.7
Psat7g126640 Pisum sativum HOM05D000428 ORTHO05D000582 2.4e-06 55.8 103 33.0
Thecc.01G060600 Theobroma cacao HOM05D000428 ORTHO05D000582 2.4e-06 55.8 89 38.2
PSO135G0173 Papaver somniferum HOM05D001873 ORTHO05D001976 3.1e-06 55.5 76 39.5
Atru.chr1.3562 Acer truncatum HOM05D000428 ORTHO05D000582 4.1e-06 55.1 67 34.3
ECA236G3264 Erigeron canadensis HOM05D000604 ORTHO05D004856 4.1e-06 55.1 54 44.4
Manes.13G120600 Manihot esculenta HOM05D000428 ORTHO05D000582 4.1e-06 55.1 89 37.1
PSO384G0842 Papaver somniferum HOM05D001873 ORTHO05D001976 4.1e-06 55.1 76 39.5
RcHm_v2.0_Chr5g0019271 Rosa chinensis HOM05D000604 ORTHO05D004856 4.1e-06 55.1 54 44.4
MSTRG.967 Avicennia marina HOM05D000428 ORTHO05D000582 5.4e-06 54.7 103 31.1
Ciclev10025109m.g Citrus clementina HOM05D000428 ORTHO05D000582 5.4e-06 54.7 99 33.3
Manes.12G106500 Manihot esculenta HOM05D000428 ORTHO05D000582 5.4e-06 54.7 89 36.0
unitig_37.g13055 Utricularia gibba HOM05D000604 ORTHO05D004856 5.4e-06 54.7 66 37.9
Dinv30013 Davidia involucrata HOM05D000428 ORTHO05D000582 7.0e-06 54.3 98 33.7
Sopen02g026570 Solanum pennellii HOM05D000604 ORTHO05D004856 7.0e-06 54.3 70 38.6
TPR.G12534 Trifolium pratense HOM05D000428 ORTHO05D000582 7.0e-06 54.3 93 34.4
GSVIVG01022079001 Vitis vinifera HOM05D000428 ORTHO05D000582 7.0e-06 54.3 89 37.1
MSTRG.24356 Avicennia marina HOM05D000428 ORTHO05D000582 9.1e-06 53.9 99 33.3
RcHm_v2.0_Chr6g0256591 Rosa chinensis HOM05D000428 ORTHO05D000582 9.1e-06 53.9 93 34.4


User provided reference genes

Program Settings