Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30449 Trifolium pratense HOM05D001100 ORTHO05D007514 1.4e-72 276.2 135 100.0
Medtr2g011680 Medicago truncatula HOM05D001100 ORTHO05D007514 6.6e-43 177.6 93 90.3
Lj6g0001591 Lotus japonicus HOM05D001100 ORTHO05D007514 8.1e-41 170.6 93 87.1
Ca_00249_v3 Cicer arietinum L. HOM05D001100 ORTHO05D007514 9.9e-39 163.7 89 87.6
Glyma.15G066900 Glycine max HOM05D001100 ORTHO05D007514 2.2e-38 162.5 100 78.0
Lalb_Chr20g0122331 Lupinus albus HOM05D001100 ORTHO05D007514 8.4e-38 160.6 93 77.4
Nn1g06802 Nelumbo nucifera HOM05D001100 ORTHO05D007514 3.5e-36 155.2 92 76.1
Duzib235G0531 Durio zibethinus HOM05D001100 ORTHO05D007514 1.0e-35 153.7 92 75.0
arahy.Tifrunner.gnm1.ann1.F2LMP4 Arachis hypogaea HOM05D001100 ORTHO05D007514 2.3e-35 152.5 90 77.8
arahy.Tifrunner.gnm1.ann1.Y92ER0 Arachis hypogaea HOM05D001100 ORTHO05D007514 2.3e-35 152.5 90 77.8
Potri.004G033200 Populus trichocarpa HOM05D001100 ORTHO05D007514 6.6e-35 151.0 90 76.7
CiPaw.10G117500 Carya illinoinensis HOM05D001100 ORTHO05D007514 1.1e-34 150.2 112 63.4
COL.COLO4_31601 Corchorus olitorius HOM05D001100 ORTHO05D007514 4.3e-34 148.3 92 71.7
TAR629G1200 Trochodendron aralioides HOM05D001100 ORTHO05D007514 4.3e-34 148.3 90 75.6
VMungo0540G1113 Vigna mungo HOM05D001100 ORTHO05D007514 4.3e-34 148.3 93 74.2
Phvul.006G192800 Phaseolus vulgaris HOM05D001100 ORTHO05D007514 5.6e-34 147.9 93 76.3
TWI63G1131 Tripterygium wilfordii HOM05D001100 ORTHO05D007514 5.6e-34 147.9 92 70.7
PGR042G3840 Punica granatum HOM05D001100 ORTHO05D007514 1.6e-33 146.4 103 67.0
Hund23599 Selenicereus undatus HOM05D001100 ORTHO05D007514 2.8e-33 145.6 92 70.7
Lj1A1214T67 Lonicera japonica HOM05D001100 ORTHO05D007514 3.6e-33 145.2 117 60.7
Aqoxy1G03915 Aquilegia oxysepala HOM05D001100 ORTHO05D007514 4.7e-33 144.8 92 69.6
Cfa000342 Carpinus fangiana HOM05D001100 ORTHO05D007514 6.2e-33 144.4 87 75.9
Sed0027927 Sechium edule HOM05D001100 ORTHO05D007514 6.2e-33 144.4 92 70.7
Solyc02g079250.4 Solanum lycopersicum HOM05D001100 ORTHO05D007514 6.2e-33 144.4 92 69.6
Thecc.06G201200 Theobroma cacao HOM05D001100 ORTHO05D007514 6.2e-33 144.4 92 70.7
AT4G05090 Arabidopsis thaliana HOM05D001100 ORTHO05D007514 1.1e-32 143.7 90 71.1
Carub.0006s3305 Capsella rubella HOM05D001100 ORTHO05D007514 1.1e-32 143.7 114 59.6
Haze_06589 Corylus avellana HOM05D001100 ORTHO05D007514 1.1e-32 143.7 90 72.2
MSTRG.15941 Avicennia marina HOM05D001100 ORTHO05D007514 1.4e-32 143.3 89 71.9
Gohir.A05G166200 Gossypium hirsutum HOM05D001100 ORTHO05D007514 1.4e-32 143.3 90 72.2
THA.LOC104806271 Tarenaya hassleriana HOM05D001100 ORTHO05D007514 1.4e-32 143.3 90 71.1
CANSAT56G3927 Cannabis sativa HOM05D001100 ORTHO05D007514 1.8e-32 142.9 92 71.7
CAN.G424.26 Capsicum annuum HOM05D001100 ORTHO05D007514 1.8e-32 142.9 92 69.6
Cc02_g12340 Coffea canephora HOM05D001100 ORTHO05D007514 1.8e-32 142.9 92 73.9
Sopen02g024070 Solanum pennellii HOM05D001100 ORTHO05D007514 1.8e-32 142.9 92 69.6
CARHR252470 Cardamine hirsuta HOM05D001100 ORTHO05D007514 2.4e-32 142.5 90 71.1
Ciclev10015399m.g Citrus clementina HOM05D001100 ORTHO05D007514 2.4e-32 142.5 92 70.7
MBI18_g26906_MAGBIO Magnolia biondii HOM05D001100 ORTHO05D007514 2.4e-32 142.5 102 66.7
Nitab4.5_0000649g0030 Nicotiana tabacum HOM05D001100 ORTHO05D007514 2.4e-32 142.5 92 69.6
Thhalv10028719m.g Eutrema salsugineum HOM05D001100 ORTHO05D007514 3.1e-32 142.1 90 70.0
Manes.17G033700 Manihot esculenta HOM05D001100 ORTHO05D007514 3.1e-32 142.1 86 73.3
Gorai.009G174400 Gossypium raimondii HOM05D001100 ORTHO05D007514 4.0e-32 141.7 90 71.1
Oeu038207.1 Olea europaea HOM05D001100 ORTHO05D007514 4.0e-32 141.7 89 69.7
Sp6g03900 Schrenkiella parvula HOM05D001100 ORTHO05D007514 4.0e-32 141.7 90 68.9
EL10Ac8g20544 Beta vulgaris HOM05D001100 ORTHO05D007514 5.2e-32 141.4 92 70.7
A09p25750 Brassica napus HOM05D001100 ORTHO05D007514 5.2e-32 141.4 90 66.7
BraA09t38144Z Brassica rapa HOM05D001100 ORTHO05D007514 5.2e-32 141.4 90 66.7
Eucgr.E03818 Eucalyptus grandis HOM05D001100 ORTHO05D007514 5.2e-32 141.4 90 70.0
Gohir.D10G022600 Gossypium hirsutum HOM05D001100 ORTHO05D007514 5.2e-32 141.4 92 69.6
Sc06g0010650 Simmondsia chinensis HOM05D001100 ORTHO05D007514 5.2e-32 141.4 90 70.0
Gohir.D05G169200 Gossypium hirsutum HOM05D001100 ORTHO05D007514 6.9e-32 141.0 90 70.0
Gorai.011G023700 Gossypium raimondii HOM05D001100 ORTHO05D007514 6.9e-32 141.0 92 69.6
BolC9t56107H Brassica oleracea HOM05D001100 ORTHO05D007514 8.9e-32 140.6 90 66.7
CSS0027676 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D007514 8.9e-32 140.6 92 66.3
Sabra04G0019000 Salix brachista HOM05D001100 ORTHO05D007514 8.9e-32 140.6 89 71.9
SGA_v2.0_scaffold7G03928 Striga asiatica HOM05D001100 ORTHO05D007514 8.9e-32 140.6 89 70.8
BcaC04g21369 Brassica carinata HOM05D001100 ORTHO05D007514 1.2e-31 140.2 90 66.7
C09p32620 Brassica napus HOM05D001100 ORTHO05D007514 1.2e-31 140.2 90 66.7
AUR62014703 Chenopodium quinoa HOM05D001100 ORTHO05D007514 1.2e-31 140.2 92 71.7
Nitab4.5_0011268g0010 Nicotiana tabacum HOM05D001100 ORTHO05D007514 1.2e-31 140.2 92 68.5
AUR62012491 Chenopodium quinoa HOM05D001100 ORTHO05D007514 2.0e-31 139.4 92 70.7
GSVIVG01003661001 Vitis vinifera HOM05D001100 ORTHO05D007514 2.6e-31 139.0 87 70.1
Gohir.A10G021800 Gossypium hirsutum HOM05D001100 ORTHO05D007514 4.4e-31 138.3 132 53.8
PSO079G0027 Papaver somniferum HOM05D001100 ORTHO05D007514 7.6e-31 137.5 87 69.0
PSO423G0128 Papaver somniferum HOM05D001100 ORTHO05D007514 9.9e-31 137.1 87 69.0
CsaV3_6G049640 Cucumis sativus L. HOM05D001100 ORTHO05D007514 1.7e-30 136.3 90 68.9
ECA234G0676 Erigeron canadensis HOM05D001100 ORTHO05D007514 1.7e-30 136.3 92 67.4
FvH4_3g03790 Fragaria vesca HOM05D001100 ORTHO05D007514 1.7e-30 136.3 90 67.8
FAN11G0383 Fragaria x ananassa HOM05D001100 ORTHO05D007514 1.7e-30 136.3 90 67.8
ATR0693G145 Amborella trichopoda HOM05D001100 ORTHO05D007514 2.9e-30 135.6 111 63.1
RcHm_v2.0_Chr5g0006041 Rosa chinensis HOM05D001100 ORTHO05D007514 4.9e-30 134.8 90 67.8
FAN21G0538 Fragaria x ananassa HOM05D001100 ORTHO05D007514 8.4e-30 134.0 90 67.8
Migut.M01223 Erythranthe guttata HOM05D001100 ORTHO05D007514 1.1e-29 133.7 89 66.3
Lsat_1_v5_gn_4_56421 Lactuca sativa HOM05D001100 ORTHO05D007514 1.4e-29 133.3 92 64.1
HanXRQChr17g0552591 Helianthus annuus HOM05D001100 ORTHO05D007514 4.2e-29 131.7 92 65.2
Prupe.4G035200 Prunus persica HOM05D001100 ORTHO05D007514 9.3e-29 130.6 90 64.4
MELO3C007329.2 Cucumis melo HOM05D001100 ORTHO05D007514 1.6e-28 129.8 107 57.0
Solyc02g079270.4 Solanum lycopersicum HOM05D001100 ORTHO05D007514 2.1e-28 129.4 99 63.6
Sopen02g024090 Solanum pennellii HOM05D001100 ORTHO05D007514 2.1e-28 129.4 99 63.6
MD05G1326400 Malus domestica HOM05D001100 ORTHO05D007514 6.0e-28 127.9 92 64.1
vmacro03803 Vaccinium macrocarpon HOM05D001100 ORTHO05D007514 6.0e-28 127.9 86 65.1
FAN25G0315 Fragaria x ananassa HOM05D001100 ORTHO05D007514 1.3e-27 126.7 90 64.4
Aa31LG9G9380 Aethionema arabicum HOM05D001100 ORTHO05D007514 2.3e-27 125.9 89 59.6
MD10G1304500 Malus domestica HOM05D001100 ORTHO05D007514 3.0e-27 125.6 90 63.3
QL05p081050 Quercus lobata HOM05D001100 ORTHO05D007514 5.1e-27 124.8 84 67.9
ClCG01G022470 Citrullus lanatus HOM05D001100 ORTHO05D007514 8.7e-27 124.0 87 62.1
Zm00001eb324080 Zea mays HOM05D001100 ORTHO05D007514 1.9e-26 122.9 87 60.9
Os07g0558200 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D007514 3.6e-25 118.6 87 60.9
Peaxi162Scf00779g00210 Petunia axillaris HOM05D001100 ORTHO05D007514 4.8e-25 118.2 70 74.3
Actinidia05567 Actinidia chinensis HOM05D001100 ORTHO05D007514 8.1e-25 117.5 68 79.4
Nitab4.5_0000649g0100 Nicotiana tabacum HOM05D001100 ORTHO05D007514 2.4e-24 115.9 126 50.0
unitig_37.g12335 Utricularia gibba HOM05D001100 ORTHO05D007514 6.9e-24 114.4 86 55.8
BcaB01g01868 Brassica carinata HOM05D001100 ORTHO05D007514 9.0e-24 114.0 67 74.6
Os07g0558300 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D007514 3.4e-23 112.1 86 59.3
EL10Ac6g14662 Beta vulgaris HOM05D001397 ORTHO05D007514 6.0e-20 101.3 72 62.5
Nitab4.5_0001967g0040 Nicotiana tabacum HOM05D001100 ORTHO05D007514 3.0e-19 99.0 65 67.7
Actinidia37011 Actinidia chinensis HOM05D001100 ORTHO05D007514 1.1e-18 97.1 72 62.5
Peaxi162Scf00779g00410 Petunia axillaris HOM05D001100 ORTHO05D007514 9.6e-18 94.0 65 64.6
Atru.chr10.2023 Acer truncatum HOM05D001100 ORTHO05D007514 7.6e-15 84.3 45 82.2
Mapoly0031s0113 Marchantia polymorpha HOM05D001100 ORTHO05D007514 3.8e-14 82.0 115 41.7
Pp3c14_9660 Physcomitrium patens HOM05D001100 ORTHO05D007514 3.8e-14 82.0 92 43.5
Actinidia26988 Actinidia chinensis HOM05D001100 ORTHO05D007514 1.8e-11 73.2 75 56.0
DCAR_028145 Daucus carota HOM05D001100 ORTHO05D007514 5.1e-11 71.6 45 73.3
CAN.G424.28 Capsicum annuum HOM05D001100 ORTHO05D007514 2.5e-10 69.3 54 59.3
Dinv40471 Davidia involucrata HOM05D001100 ORTHO05D007514 1.3e-09 67.0 95 41.1
Actinidia15936 Actinidia chinensis HOM05D001100 ORTHO05D053246 2.4e-08 62.8 45 68.9
MCO07G303 Micromonas commoda HOM05D001100 ORTHO05D001503 9.0e-08 60.8 89 39.3
Duzib213G0651 Durio zibethinus HOM05D001100 ORTHO05D001503 1.5e-07 60.1 87 40.2
MCO13G507 Micromonas commoda HOM05D001100 ORTHO05D007514 2.0e-07 59.7 91 37.4
MD10G1301100 Malus domestica HOM05D001100 ORTHO05D001503 1.0e-06 57.4 90 36.7
Medtr4g090525 Medicago truncatula HOM05D001100 ORTHO05D001503 1.3e-06 57.0 87 37.9
Prupe.4G039300 Prunus persica HOM05D001100 ORTHO05D001503 1.3e-06 57.0 90 35.6
CBR_g427 Chara braunii HOM05D001100 ORTHO05D001503 1.7e-06 56.6 87 35.6
Mapoly0068s0099 Marchantia polymorpha HOM05D001100 ORTHO05D001503 1.7e-06 56.6 87 34.5
TPR.G32404 Trifolium pratense HOM05D001100 ORTHO05D001503 1.7e-06 56.6 87 36.8
AagrBONN_evm.TU.Sc2ySwM_362.1404 Anthoceros agrestis HOM05D001100 ORTHO05D001503 2.2e-06 56.2 90 33.3
ECA234G2407 Erigeron canadensis HOM05D001100 ORTHO05D001503 2.2e-06 56.2 86 33.7
MD05G1323300 Malus domestica HOM05D001100 ORTHO05D001503 2.2e-06 56.2 86 32.6
Nn1g06698 Nelumbo nucifera HOM05D001100 ORTHO05D001503 2.2e-06 56.2 90 36.7
Phvul.006G190400 Phaseolus vulgaris HOM05D001100 ORTHO05D001503 2.2e-06 56.2 87 36.8
Pp3c3_21240 Physcomitrium patens HOM05D001100 ORTHO05D001503 2.2e-06 56.2 87 37.9
Psat7g111200 Pisum sativum HOM05D001100 ORTHO05D001503 2.2e-06 56.2 87 37.9
arahy.Tifrunner.gnm1.ann1.1HMN83 Arachis hypogaea HOM05D001100 ORTHO05D001503 2.9e-06 55.8 90 37.8
arahy.Tifrunner.gnm1.ann1.U4QVWL Arachis hypogaea HOM05D001100 ORTHO05D001503 2.9e-06 55.8 90 37.8
CAN.G1181.1 Capsicum annuum HOM05D001100 ORTHO05D001503 2.9e-06 55.8 87 34.5
CiPaw.11G174700 Carya illinoinensis HOM05D001100 ORTHO05D001503 2.9e-06 55.8 86 34.9
ClCG03G005600 Citrullus lanatus HOM05D001100 ORTHO05D001503 2.9e-06 55.8 86 32.6
MELO3C002563.2 Cucumis melo HOM05D001100 ORTHO05D001503 2.9e-06 55.8 86 32.6
Lj6g0007265 Lotus japonicus HOM05D001100 ORTHO05D001503 2.9e-06 55.8 76 43.4
Sabra11G0031200 Salix brachista HOM05D001100 ORTHO05D001503 2.9e-06 55.8 83 37.3
SalBow1G4616 Salvia bowleyana HOM05D001100 ORTHO05D001503 2.9e-06 55.8 87 34.5
SalBow7G2402 Salvia bowleyana HOM05D001100 ORTHO05D001503 2.9e-06 55.8 87 34.5
Ca_00275_v3 Cicer arietinum L. HOM05D001100 ORTHO05D001503 3.8e-06 55.5 87 36.8
CsaV3_1G011860 Cucumis sativus L. HOM05D001100 ORTHO05D001503 3.8e-06 55.5 86 32.6
FAN25G1363 Fragaria x ananassa HOM05D001100 ORTHO05D001503 3.8e-06 55.5 90 34.4
Glyma.13G244900 Glycine max HOM05D001100 ORTHO05D001503 3.8e-06 55.5 87 36.8
Glyma.15G068800 Glycine max HOM05D001100 ORTHO05D001503 3.8e-06 55.5 87 36.8
Gohir.A06G123800 Gossypium hirsutum HOM05D001100 ORTHO05D001503 3.8e-06 55.5 84 36.9
Gohir.D10G023000 Gossypium hirsutum HOM05D001100 ORTHO05D001503 3.8e-06 55.5 87 36.8
Gorai.011G024100 Gossypium raimondii HOM05D001100 ORTHO05D001503 3.8e-06 55.5 87 36.8
Lalb_Chr05g0218251 Lupinus albus HOM05D001100 ORTHO05D001503 3.8e-06 55.5 87 36.8
Nn1g03945 Nelumbo nucifera HOM05D001100 ORTHO05D001503 3.8e-06 55.5 90 36.7
RcHm_v2.0_Chr5g0006821 Rosa chinensis HOM05D001100 ORTHO05D001503 3.8e-06 55.5 90 34.4
VMungo0540G2005 Vigna mungo HOM05D001100 ORTHO05D001503 3.8e-06 55.5 87 36.8
MSTRG.6848 Avicennia marina HOM05D001100 ORTHO05D001503 4.9e-06 55.1 90 35.6
COL.COLO4_31551 Corchorus olitorius HOM05D001100 ORTHO05D001503 4.9e-06 55.1 84 36.9
Duzib235G1189 Durio zibethinus HOM05D001100 ORTHO05D001503 4.9e-06 55.1 90 37.8
Migut.H01495 Erythranthe guttata HOM05D001100 ORTHO05D001503 4.9e-06 55.1 87 34.5
Gohir.D06G128700 Gossypium hirsutum HOM05D001100 ORTHO05D001503 4.9e-06 55.1 84 36.9
PRCOL_00001073 Prasinoderma coloniale HOM05D001100 ORTHO05D007514 4.9e-06 55.1 106 33.0
PGR004G1129 Punica granatum HOM05D001100 ORTHO05D001503 4.9e-06 55.1 90 36.7
Sed0002135 Sechium edule HOM05D001100 ORTHO05D001503 4.9e-06 55.1 86 32.6
HPP92_013157 Vanilla planifolia HOM05D001100 ORTHO05D001503 4.9e-06 55.1 90 35.6
Ciclev10008644m.g Citrus clementina HOM05D001100 ORTHO05D001503 6.5e-06 54.7 89 36.0
Cc02_g12650 Coffea canephora HOM05D001100 ORTHO05D001503 6.5e-06 54.7 93 36.6
COL.COLO4_09462 Corchorus olitorius HOM05D001100 ORTHO05D001503 6.5e-06 54.7 87 37.9
Migut.M00866 Erythranthe guttata HOM05D001100 ORTHO05D001503 6.5e-06 54.7 87 35.6
Eucgr.G00577 Eucalyptus grandis HOM05D001100 ORTHO05D001503 6.5e-06 54.7 90 34.4
Gorai.010G150200 Gossypium raimondii HOM05D001100 ORTHO05D001503 6.5e-06 54.7 84 36.9
Lsat_1_v5_gn_4_56081 Lactuca sativa HOM05D001100 ORTHO05D001503 6.5e-06 54.7 87 34.5
Lalb_Chr19g0134381 Lupinus albus HOM05D001100 ORTHO05D001503 6.5e-06 54.7 90 34.4
PRCOL_00004535 Prasinoderma coloniale HOM05D001100 ORTHO05D001503 6.5e-06 54.7 89 32.6
TPR.G36821 Trifolium pratense HOM05D001100 ORTHO05D001503 6.5e-06 54.7 87 35.6
TWI38G0457 Tripterygium wilfordii HOM05D001100 ORTHO05D001503 6.5e-06 54.7 90 35.6
TAR624G0534 Trochodendron aralioides HOM05D001100 ORTHO05D001503 6.5e-06 54.7 90 36.7
Zm00001eb192000 Zea mays HOM05D001100 ORTHO05D001503 6.5e-06 54.7 90 36.7
CANSAT56G1894 Cannabis sativa HOM05D001100 ORTHO05D001503 8.4e-06 54.3 87 34.5
Cfa000374 Carpinus fangiana HOM05D001100 ORTHO05D001503 8.4e-06 54.3 90 35.6
AUR62014747 Chenopodium quinoa HOM05D001100 ORTHO05D001503 8.4e-06 54.3 90 37.8
Ca_23097_v3 Cicer arietinum L. HOM05D001100 ORTHO05D001503 8.4e-06 54.3 87 33.3
Haze_06551 Corylus avellana HOM05D001100 ORTHO05D001503 8.4e-06 54.3 90 35.6
ECA236G0140 Erigeron canadensis HOM05D001100 ORTHO05D001503 8.4e-06 54.3 87 35.6
FAN16G2544 Fragaria x ananassa HOM05D001100 ORTHO05D001503 8.4e-06 54.3 86 32.6
Glyma.07G191500 Glycine max HOM05D001100 ORTHO05D001503 8.4e-06 54.3 84 38.1
Gohir.A10G022200 Gossypium hirsutum HOM05D001100 ORTHO05D001503 8.4e-06 54.3 90 37.8
HanXRQChr15g0494501 Helianthus annuus HOM05D001100 ORTHO05D001503 8.4e-06 54.3 87 35.6
Lsat_1_v5_gn_7_106201 Lactuca sativa HOM05D001100 ORTHO05D001503 8.4e-06 54.3 87 35.6
Lalb_Chr15g0090021 Lupinus albus HOM05D001100 ORTHO05D001503 8.4e-06 54.3 87 35.6
Medtr8g464260 Medicago truncatula HOM05D001100 ORTHO05D001503 8.4e-06 54.3 87 33.3
Peaxi162Scf00000g00498 Petunia axillaris HOM05D001100 ORTHO05D001503 8.4e-06 54.3 94 34.0
Psat4g173160 Pisum sativum HOM05D001100 ORTHO05D001503 8.4e-06 54.3 87 33.3
TPR.G29366 Trifolium pratense HOM05D001100 ORTHO05D001503 8.4e-06 54.3 87 33.3


User provided reference genes

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