Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001100', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '556', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p10330' => 'bna', 'A02p43090' => 'bna', 'A02p43100' => 'bna', 'A03p48690' => 'bna', 'A06p21670' => 'bna', 'A06p30600' => 'bna', 'A06p30610' => 'bna', 'A06p30620' => 'bna', 'A08p33290' => 'bna', 'A09p08500' => 'bna', 'A09p25750' => 'bna', 'A10p11650' => 'bna', 'Aa31LG1G17920' => 'aar', 'Aa31LG3G10330' => 'aar', 'Aa31LG9G9330' => 'aar', 'Aa31LG9G9340' => 'aar', 'Aa31LG9G9350' => 'aar', 'Aa31LG9G9380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3377' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4235' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4236' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1404' => 'aag', 'Actinidia01386' => 'ach', 'Actinidia01923' => 'ach', 'Actinidia05567' => 'ach', 'Actinidia14799' => 'ach', 'Actinidia15936' => 'ach', 'Actinidia18753' => 'ach', 'Actinidia26988' => 'ach', 'Actinidia35270' => 'ach', 'Actinidia37011' => 'ach', 'Actinidia38824' => 'ach', 'Actinidia38866' => 'ach', 'Ah.04g165010' => 'amhyb', 'Ah.14g089050' => 'amhyb', 'AL6G19680' => 'aly', 'AL8G29730' => 'aly', 'AL8G41240' => 'aly', 'AL8G41250' => 'aly', 'AL8G41260' => 'aly', 'Aqoxy1G01118' => 'aox', 'Aqoxy1G02660' => 'aox', 'Aqoxy1G03915' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1HMN83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IT3ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK4CWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LMP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT4TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ18QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC667I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYCR2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4QVWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y92ER0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z42PVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8HAGL' => 'arhy', 'AT4G05090' => 'ath', 'AT5G09290' => 'ath', 'AT5G54390' => 'ath', 'AT5G63980' => 'ath', 'AT5G63990' => 'ath', 'AT5G64000' => 'ath', 'ATR0584G033' => 'atr', 'ATR0693G145' => 'atr', 'ATR0693G320' => 'atr', 'Atru.chr10.1979' => 'acertr', 'Atru.chr10.2023' => 'acertr', 'Atru.chr2.2814' => 'acertr', 'Atru.chr4.879' => 'acertr', 'AUR62003581' => 'cqu', 'AUR62012491' => 'cqu', 'AUR62014703' => 'cqu', 'AUR62014704' => 'cqu', 'AUR62014747' => 'cqu', 'AUR62015617' => 'cqu', 'AUR62016925' => 'cqu', 'AUR62017891' => 'cqu', 'AUR62017894' => 'cqu', 'AUR62029328' => 'cqu', 'AUR62029340' => 'cqu', 'AUR62043727' => 'cqu', 'BcaB01g01868' => 'bca', 'BcaB03g15312' => 'bca', 'BcaB05g22131' => 'bca', 'BcaB06g28342' => 'bca', 'BcaB07g29712' => 'bca', 'BcaB07g29714' => 'bca', 'BcaB08g35793' => 'bca', 'BcaC01g02653' => 'bca', 'BcaC03g14320' => 'bca', 'BcaC03g18235' => 'bca', 'BcaC03g18236' => 'bca', 'BcaC04g20341' => 'bca', 'BcaC04g21369' => 'bca', 'BolC2t07804H' => 'bol', 'BolC2t12379H' => 'bol', 'BolC2t12380H' => 'bol', 'BolC3t18496H' => 'bol', 'BolC5t34147H' => 'bol', 'BolC9t53874H' => 'bol', 'BolC9t56107H' => 'bol', 'BolC9t57345H' => 'bol', 'BraA02t06100Z' => 'bra', 'BraA06t25256Z' => 'bra', 'BraA06t26012Z' => 'bra', 'BraA09t36499Z' => 'bra', 'BraA09t38144Z' => 'bra', 'BraA10t43260Z' => 'bra', 'C02p17060' => 'bna', 'C02p63060' => 'bna', 'C02p63070' => 'bna', 'C03p62340' => 'bna', 'C03p62350' => 'bna', 'C03p62360' => 'bna', 'C09p09630' => 'bna', 'C09p32620' => 'bna', 'C09p44720' => 'bna', 'CAN.G1156.49' => 'can', 'CAN.G1181.1' => 'can', 'CAN.G424.26' => 'can', 'CAN.G424.28' => 'can', 'CAN.G433.19' => 'can', 'CANSAT01G0170' => 'cansat', 'CANSAT56G1894' => 'cansat', 'CANSAT56G3927' => 'cansat', 'CARHR204120' => 'chi', 'CARHR252470' => 'chi', 'CARHR267670' => 'chi', 'CARHR277900' => 'chi', 'CARHR277910' => 'chi', 'CARHR277920' => 'chi', 'Carub.0006s0784' => 'cru', 'Carub.0006s3305' => 'cru', 'Carub.0008s1472' => 'cru', 'Carub.0008s2476' => 'cru', 'Carub.0008s2477' => 'cru', 'Carub.0008s2478' => 'cru', 'Ca_00249_v3' => 'car', 'Ca_00275_v3' => 'car', 'Ca_18248_v3' => 'car', 'Ca_23097_v3' => 'car', 'Ca_29840_v3' => 'car', 'CBR_g10965' => 'cbr', 'CBR_g427' => 'cbr', 'Cc02_g12340' => 'ccan', 'Cc02_g12650' => 'ccan', 'Cc05_g12560' => 'ccan', 'Cc07_g18630' => 'ccan', 'CDE02G3173' => 'cde', 'CDE04G3754' => 'cde', 'CDE05G2691' => 'cde', 'CDE12G0704' => 'cde', 'Cfa000342' => 'cfa', 'Cfa000374' => 'cfa', 'Cfa001633' => 'cfa', 'Cfa002905' => 'cfa', 'Cfa020527' => 'cfa', 'Ciclev10001463m.g' => 'ccl', 'Ciclev10008644m.g' => 'ccl', 'Ciclev10015112m.g' => 'ccl', 'Ciclev10015399m.g' => 'ccl', 'CiPaw.03G120600' => 'cil', 'CiPaw.09G159900' => 'cil', 'CiPaw.10G117500' => 'cil', 'CiPaw.11G174700' => 'cil', 'ClCG01G015360' => 'cla', 'ClCG01G022470' => 'cla', 'ClCG03G005600' => 'cla', 'ClCG11G018360' => 'cla', 'COL.COLO4_09462' => 'col', 'COL.COLO4_31551' => 'col', 'COL.COLO4_31601' => 'col', 'COL.COLO4_35760' => 'col', 'Cpa.g.sc2554.1' => 'cpa', 'Cpa.g.sc27.102' => 'cpa', 'Cpa.g.sc27.134' => 'cpa', 'Cpa.g.sc42.165' => 'cpa', 'Cre01.g030250' => 'cre', 'Cre12.g501050' => 'cre', 'CsaV3_1G011860' => 'csa', 'CsaV3_3G044460' => 'csa', 'CsaV3_4G008560' => 'csa', 'CsaV3_6G041580' => 'csa', 'CsaV3_6G049640' => 'csa', 'CSS0011776' => 'camsi', 'CSS0015291' => 'camsi', 'CSS0018393' => 'camsi', 'CSS0018704' => 'camsi', 'CSS0027676' => 'camsi', 'DCAR_001208' => 'dca', 'DCAR_008064' => 'dca', 'DCAR_017157' => 'dca', 'DCAR_028145' => 'dca', 'Dinv07109' => 'din', 'Dinv08331' => 'din', 'Dinv18985' => 'din', 'Dinv20761' => 'din', 'Dinv24378' => 'din', 'Dinv24765' => 'din', 'Dinv39795' => 'din', 'Dinv40471' => 'din', 'Dinv40511' => 'din', 'Duzib116G0436' => 'dzi', 'Duzib187G0114' => 'dzi', 'Duzib192G0604' => 'dzi', 'Duzib213G0651' => 'dzi', 'Duzib235G0531' => 'dzi', 'Duzib235G1189' => 'dzi', 'Duzib264G0434' => 'dzi', 'ECA234G0676' => 'eca', 'ECA234G2407' => 'eca', 'ECA236G0140' => 'eca', 'EL10Ac4g08088' => 'bvu', 'EL10Ac8g20544' => 'bvu', 'EL10Ac8g20633' => 'bvu', 'Eucgr.E03818' => 'egr', 'Eucgr.F03343' => 'egr', 'Eucgr.G00577' => 'egr', 'Eucgr.I00195' => 'egr', 'FAN11G0341' => 'fan', 'FAN11G0383' => 'fan', 'FAN11G2753' => 'fan', 'FAN16G0535' => 'fan', 'FAN16G1788' => 'fan', 'FAN16G2544' => 'fan', 'FAN19G1763' => 'fan', 'FAN21G0538' => 'fan', 'FAN21G0587' => 'fan', 'FAN21G3488' => 'fan', 'FAN23G1447' => 'fan', 'FAN23G1742' => 'fan', 'FAN23G2296' => 'fan', 'FAN25G0315' => 'fan', 'FAN25G1363' => 'fan', 'FAN25G3062' => 'fan', 'FAN26G0081' => 'fan', 'FAN28G0182' => 'fan', 'FvH4_1g24470' => 'fve', 'FvH4_3g03790' => 'fve', 'FvH4_3g04430' => 'fve', 'FvH4_3g20770' => 'fve', 'Glyma.05G132200' => 'gma', 'Glyma.06G249500' => 'gma', 'Glyma.07G191500' => 'gma', 'Glyma.08G086800' => 'gma', 'Glyma.12G148400' => 'gma', 'Glyma.13G185200' => 'gma', 'Glyma.13G244900' => 'gma', 'Glyma.13G247100' => 'gma', 'Glyma.15G066900' => 'gma', 'Glyma.15G068800' => 'gma', 'Gohir.A01G067300' => 'ghi', 'Gohir.A04G103533' => 'ghi', 'Gohir.A04G103566' => 'ghi', 'Gohir.A05G166200' => 'ghi', 'Gohir.A05G256500' => 'ghi', 'Gohir.A06G123800' => 'ghi', 'Gohir.A09G004400' => 'ghi', 'Gohir.A09G019900' => 'ghi', 'Gohir.A10G021800' => 'ghi', 'Gohir.A10G022200' => 'ghi', 'Gohir.A10G156800' => 'ghi', 'Gohir.D01G054500' => 'ghi', 'Gohir.D05G169200' => 'ghi', 'Gohir.D06G128700' => 'ghi', 'Gohir.D09G003900' => 'ghi', 'Gohir.D09G019500' => 'ghi', 'Gohir.D10G022600' => 'ghi', 'Gohir.D10G023000' => 'ghi', 'Gohir.D10G108800' => 'ghi', 'Gorai.002G074400' => 'gra', 'Gorai.006G005300' => 'gra', 'Gorai.006G022900' => 'gra', 'Gorai.009G174400' => 'gra', 'Gorai.010G150200' => 'gra', 'Gorai.011G023700' => 'gra', 'Gorai.011G024100' => 'gra', 'Gorai.011G119100' => 'gra', 'GSVIVG01003661001' => 'vvi', 'GSVIVG01005836001' => 'vvi', 'GSVIVG01014412001' => 'vvi', 'GSVIVG01026471001' => 'vvi', 'HanXRQChr09g0259741' => 'han', 'HanXRQChr15g0494501' => 'han', 'HanXRQChr16g0517931' => 'han', 'HanXRQChr17g0552591' => 'han', 'Haze_06551' => 'cav', 'Haze_06589' => 'cav', 'Haze_25258' => 'cav', 'Hma1.2p1_0144F.1_g065020' => 'hma', 'Hma1.2p1_0539F.1_g174620' => 'hma', 'HPP92_005670' => 'vpl', 'HPP92_013157' => 'vpl', 'Hund04427' => 'sun', 'Hund23599' => 'sun', 'Hund27429' => 'sun', 'Hund27430' => 'sun', 'Lalb_Chr01g0006451' => 'lal', 'Lalb_Chr05g0218251' => 'lal', 'Lalb_Chr07g0188391' => 'lal', 'Lalb_Chr15g0090021' => 'lal', 'Lalb_Chr19g0134381' => 'lal', 'Lalb_Chr20g0122331' => 'lal', 'Lj1A1211T72' => 'lonja', 'Lj1A1214T67' => 'lonja', 'Lj1A851G60' => 'lonja', 'Lj2A282T44' => 'lonja', 'Lj3g0001024' => 'lja', 'Lj4A836G51' => 'lonja', 'Lj4C836T4' => 'lonja', 'Lj4g0003458' => 'lja', 'Lj4g0016822' => 'lja', 'Lj4g0024750' => 'lja', 'Lj6g0001591' => 'lja', 'Lj6g0007265' => 'lja', 'Lsat_1_v5_gn_4_137741' => 'lsa', 'Lsat_1_v5_gn_4_56081' => 'lsa', 'Lsat_1_v5_gn_4_56421' => 'lsa', 'Lsat_1_v5_gn_7_106201' => 'lsa', 'Manes.03G115100' => 'mes', 'Manes.12G156600' => 'mes', 'Manes.16G022600' => 'mes', 'Manes.17G033700' => 'mes', 'Mapoly0030s0063' => 'mpo', 'Mapoly0031s0113' => 'mpo', 'Mapoly0068s0099' => 'mpo', 'MBI02_g39535_MAGBIO' => 'mbi', 'MBI06_g27446_MAGBIO' => 'mbi', 'MBI18_g26906_MAGBIO' => 'mbi', 'MCO07G303' => 'mco', 'MCO08G277' => 'mco', 'MCO13G507' => 'mco', 'MD01G1008900' => 'mdo', 'MD03G1221700' => 'mdo', 'MD05G1323300' => 'mdo', 'MD05G1326400' => 'mdo', 'MD10G1301100' => 'mdo', 'MD10G1304400' => 'mdo', 'MD10G1304500' => 'mdo', 'MD11G1239100' => 'mdo', 'Medtr2g011680' => 'mtr', 'Medtr2g012510' => 'mtr', 'Medtr3g109970' => 'mtr', 'Medtr4g090525' => 'mtr', 'Medtr4g094672' => 'mtr', 'Medtr8g464260' => 'mtr', 'MELO3C002563.2' => 'cme', 'MELO3C007329.2' => 'cme', 'MELO3C008062.2' => 'cme', 'MELO3C018215.2' => 'cme', 'MELO3C030672.2' => 'cme', 'Migut.H00694' => 'egut', 'Migut.H01495' => 'egut', 'Migut.L00670' => 'egut', 'Migut.M00866' => 'egut', 'Migut.M01223' => 'egut', 'MSTRG.14695' => 'ama', 'MSTRG.15941' => 'ama', 'MSTRG.2644' => 'ama', 'MSTRG.6848' => 'ama', 'Nitab4.5_0000496g0090' => 'nta', 'Nitab4.5_0000649g0030' => 'nta', 'Nitab4.5_0000649g0100' => 'nta', 'Nitab4.5_0000662g0040' => 'nta', 'Nitab4.5_0001610g0010' => 'nta', 'Nitab4.5_0001967g0040' => 'nta', 'Nitab4.5_0003114g0090' => 'nta', 'Nitab4.5_0006694g0030' => 'nta', 'Nitab4.5_0006981g0010' => 'nta', 'Nitab4.5_0011268g0010' => 'nta', 'Nitab4.5_0011268g0020' => 'nta', 'Nitab4.5_0021992g0010' => 'nta', 'Nn1g03945' => 'nnu', 'Nn1g06698' => 'nnu', 'Nn1g06802' => 'nnu', 'Nn2g12165' => 'nnu', 'Nn3g16501' => 'nnu', 'Nn3g17606' => 'nnu', 'Nn4g23799' => 'nnu', 'Nn5g28107' => 'nnu', 'Nn5g28512' => 'nnu', 'Nn6g33905' => 'nnu', 'Nn7g37433' => 'nnu', 'Nn8g38977' => 'nnu', 'Oeu004238.1' => 'oeu', 'Oeu008024.1' => 'oeu', 'Oeu028416.1' => 'oeu', 'Oeu031649.1' => 'oeu', 'Oeu038207.1' => 'oeu', 'Oeu053966.2' => 'oeu', 'Oeu055675.1' => 'oeu', 'Oeu058291.1' => 'oeu', 'Os02g0805500' => 'osa', 'Os07g0558200' => 'osa', 'Os07g0558300' => 'osa', 'Os12g0183200' => 'osa', 'Os12g0183300' => 'osa', 'Peaxi162Scf00000g00498' => 'pax', 'Peaxi162Scf00525g00018' => 'pax', 'Peaxi162Scf00779g00210' => 'pax', 'Peaxi162Scf00779g00410' => 'pax', 'Peaxi162Scf00779g00412' => 'pax', 'PGR004G1129' => 'pgr', 'PGR031G3797' => 'pgr', 'PGR042G3840' => 'pgr', 'PGR119G0884' => 'pgr', 'PGSC0003DMG400008568' => 'stu', 'PGSC0003DMG400022370' => 'stu', 'PGSC0003DMG400023321' => 'stu', 'PGSC0003DMG400030007' => 'stu', 'Phvul.002G190600' => 'pvu', 'Phvul.002G223600' => 'pvu', 'Phvul.006G190400' => 'pvu', 'Phvul.006G192800' => 'pvu', 'Phvul.011G148400' => 'pvu', 'Potri.004G033200' => 'ptr', 'Potri.004G036400' => 'ptr', 'Potri.005G063900' => 'ptr', 'Potri.007G105100' => 'ptr', 'Potri.011G044900' => 'ptr', 'Potri.011G124700' => 'ptr', 'Pp3c13_15690' => 'ppa', 'Pp3c14_9660' => 'ppa', 'Pp3c15_5590' => 'ppa', 'Pp3c3_21240' => 'ppa', 'PRCOL_00001073' => 'pco', 'PRCOL_00001956' => 'pco', 'PRCOL_00004535' => 'pco', 'Prupe.4G035200' => 'ppe', 'Prupe.4G039300' => 'ppe', 'Prupe.4G187800' => 'ppe', 'Prupe.4G272000' => 'ppe', 'Psat1g207680' => 'psa', 'Psat1g209040' => 'psa', 'Psat4g173160' => 'psa', 'Psat7g088480' => 'psa', 'Psat7g111200' => 'psa', 'PSO079G0027' => 'pso', 'PSO170G6694' => 'pso', 'PSO423G0128' => 'pso', 'PSO528G0154' => 'pso', 'QL05p038543' => 'qlo', 'QL05p081050' => 'qlo', 'QL05p081056' => 'qlo', 'QL08p019034' => 'qlo', 'QL10p043423' => 'qlo', 'RcHm_v2.0_Chr2g0121661' => 'rch', 'RcHm_v2.0_Chr2g0121711' => 'rch', 'RcHm_v2.0_Chr2g0121731' => 'rch', 'RcHm_v2.0_Chr5g0006041' => 'rch', 'RcHm_v2.0_Chr5g0006821' => 'rch', 'RcHm_v2.0_Chr5g0035001' => 'rch', 'RcHm_v2.0_Chr7g0242171' => 'rch', 'Rhsim04G0018700' => 'rsi', 'Rhsim08G0002400' => 'rsi', 'Rhsim10G0134700' => 'rsi', 'Rhsim13G0175000' => 'rsi', 'Sabra04G0019000' => 'sbr', 'Sabra05G0053200' => 'sbr', 'Sabra11G0031200' => 'sbr', 'Sabra11G0109400' => 'sbr', 'SalBow1G4172' => 'sbo', 'SalBow1G4616' => 'sbo', 'SalBow7G2402' => 'sbo', 'SalBow8G0378' => 'sbo', 'SalBow8G3393' => 'sbo', 'Sc06g0003860' => 'sci', 'Sc06g0010650' => 'sci', 'Sc07g0001800' => 'sci', 'Sed0002135' => 'sed', 'Sed0005361' => 'sed', 'Sed0023425' => 'sed', 'Sed0027927' => 'sed', 'SEGI_00795' => 'sgi', 'SEGI_26343' => 'sgi', 'SEGI_35269' => 'sgi', 'SEGI_37268' => 'sgi', 'SGA_v2.0_scaffold159G37645' => 'sas', 'SGA_v2.0_scaffold370G50110' => 'sas', 'SGA_v2.0_scaffold73G24306' => 'sas', 'SGA_v2.0_scaffold7G03928' => 'sas', 'SHI11462' => 'shi', 'SHI11463' => 'shi', 'SHI30977' => 'shi', 'SHI33254' => 'shi', 'SHI33332' => 'shi', 'SHI34788' => 'shi', 'SHI49793' => 'shi', 'SMO134G0102' => 'smo', 'SMO200G0062' => 'smo', 'Solyc02g078860.3' => 'sly', 'Solyc02g079250.4' => 'sly', 'Solyc02g079270.4' => 'sly', 'Solyc04g016570.1' => 'sly', 'Solyc05g056490.4' => 'sly', 'Solyc12g013560.2' => 'sly', 'Sopen02g023680' => 'spe', 'Sopen02g024070' => 'spe', 'Sopen02g024090' => 'spe', 'Sopen05g034890' => 'spe', 'Sopen12g006920' => 'spe', 'Sp2g27050' => 'spa', 'Sp2g27060' => 'spa', 'Sp2g27070' => 'spa', 'Sp6g03900' => 'spa', 'Sp6g16400' => 'spa', 'TAR381G0336' => 'tar', 'TAR624G0534' => 'tar', 'TAR625G0855' => 'tar', 'TAR626G0779' => 'tar', 'TAR629G1200' => 'tar', 'THA.LOC104800114' => 'tha', 'THA.LOC104806271' => 'tha', 'THA.LOC104811851' => 'tha', 'THA.LOC104813658' => 'tha', 'THA.LOC104818427' => 'tha', 'THA.LOC104819342' => 'tha', 'THA.LOC104824893' => 'tha', 'Thecc.01G134000' => 'tca', 'Thecc.06G196000' => 'tca', 'Thecc.06G201200' => 'tca', 'Thecc.07G074400' => 'tca', 'Thhalv10004312m.g' => 'esa', 'Thhalv10004421m.g' => 'esa', 'Thhalv10004505m.g' => 'esa', 'Thhalv10013845m.g' => 'esa', 'Thhalv10013884m.g' => 'esa', 'Thhalv10028719m.g' => 'esa', 'TPR.G2929' => 'tpr', 'TPR.G29366' => 'tpr', 'TPR.G30449' => 'tpr', 'TPR.G32404' => 'tpr', 'TPR.G36734' => 'tpr', 'TPR.G36821' => 'tpr', 'TWI38G0457' => 'twi', 'TWI38G0548' => 'twi', 'TWI39G1022' => 'twi', 'TWI63G1131' => 'twi', 'TWI79G1082' => 'twi', 'unitig_37.g12335' => 'ugi', 'unitig_899.g14679' => 'ugi', 'vmacro03803' => 'vma', 'vmacro03805' => 'vma', 'vmacro09549' => 'vma', 'vmacro18671' => 'vma', 'vmacro22274' => 'vma', 'vmacro22276' => 'vma', 'VMungo0251G1464' => 'vmu', 'VMungo0251G2364' => 'vmu', 'VMungo0540G0628' => 'vmu', 'VMungo0540G1113' => 'vmu', 'VMungo0540G2005' => 'vmu', 'VMungo1127G0935' => 'vmu', 'Zm00001eb192000' => 'zma', 'Zm00001eb324080' => 'zma', 'Zm00001eb409060' => 'zma', 'Zm00001eb409080' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001100', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001100' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001100', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '556', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001100' ) ), 'genes' => array( 'A02p10330' => 'bna', 'A02p43090' => 'bna', 'A02p43100' => 'bna', 'A03p48690' => 'bna', 'A06p21670' => 'bna', 'A06p30600' => 'bna', 'A06p30610' => 'bna', 'A06p30620' => 'bna', 'A08p33290' => 'bna', 'A09p08500' => 'bna', 'A09p25750' => 'bna', 'A10p11650' => 'bna', 'Aa31LG1G17920' => 'aar', 'Aa31LG3G10330' => 'aar', 'Aa31LG9G9330' => 'aar', 'Aa31LG9G9340' => 'aar', 'Aa31LG9G9350' => 'aar', 'Aa31LG9G9380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3377' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4235' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4236' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1404' => 'aag', 'Actinidia01386' => 'ach', 'Actinidia01923' => 'ach', 'Actinidia05567' => 'ach', 'Actinidia14799' => 'ach', 'Actinidia15936' => 'ach', 'Actinidia18753' => 'ach', 'Actinidia26988' => 'ach', 'Actinidia35270' => 'ach', 'Actinidia37011' => 'ach', 'Actinidia38824' => 'ach', 'Actinidia38866' => 'ach', 'Ah.04g165010' => 'amhyb', 'Ah.14g089050' => 'amhyb', 'AL6G19680' => 'aly', 'AL8G29730' => 'aly', 'AL8G41240' => 'aly', 'AL8G41250' => 'aly', 'AL8G41260' => 'aly', 'Aqoxy1G01118' => 'aox', 'Aqoxy1G02660' => 'aox', 'Aqoxy1G03915' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1HMN83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IT3ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK4CWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LMP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT4TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ18QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC667I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYCR2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4QVWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y92ER0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z42PVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8HAGL' => 'arhy', 'AT4G05090' => 'ath', 'AT5G09290' => 'ath', 'AT5G54390' => 'ath', 'AT5G63980' => 'ath', 'AT5G63990' => 'ath', 'AT5G64000' => 'ath', 'ATR0584G033' => 'atr', 'ATR0693G145' => 'atr', 'ATR0693G320' => 'atr', 'Atru.chr10.1979' => 'acertr', 'Atru.chr10.2023' => 'acertr', 'Atru.chr2.2814' => 'acertr', 'Atru.chr4.879' => 'acertr', 'AUR62003581' => 'cqu', 'AUR62012491' => 'cqu', 'AUR62014703' => 'cqu', 'AUR62014704' => 'cqu', 'AUR62014747' => 'cqu', 'AUR62015617' => 'cqu', 'AUR62016925' => 'cqu', 'AUR62017891' => 'cqu', 'AUR62017894' => 'cqu', 'AUR62029328' => 'cqu', 'AUR62029340' => 'cqu', 'AUR62043727' => 'cqu', 'BcaB01g01868' => 'bca', 'BcaB03g15312' => 'bca', 'BcaB05g22131' => 'bca', 'BcaB06g28342' => 'bca', 'BcaB07g29712' => 'bca', 'BcaB07g29714' => 'bca', 'BcaB08g35793' => 'bca', 'BcaC01g02653' => 'bca', 'BcaC03g14320' => 'bca', 'BcaC03g18235' => 'bca', 'BcaC03g18236' => 'bca', 'BcaC04g20341' => 'bca', 'BcaC04g21369' => 'bca', 'BolC2t07804H' => 'bol', 'BolC2t12379H' => 'bol', 'BolC2t12380H' => 'bol', 'BolC3t18496H' => 'bol', 'BolC5t34147H' => 'bol', 'BolC9t53874H' => 'bol', 'BolC9t56107H' => 'bol', 'BolC9t57345H' => 'bol', 'BraA02t06100Z' => 'bra', 'BraA06t25256Z' => 'bra', 'BraA06t26012Z' => 'bra', 'BraA09t36499Z' => 'bra', 'BraA09t38144Z' => 'bra', 'BraA10t43260Z' => 'bra', 'C02p17060' => 'bna', 'C02p63060' => 'bna', 'C02p63070' => 'bna', 'C03p62340' => 'bna', 'C03p62350' => 'bna', 'C03p62360' => 'bna', 'C09p09630' => 'bna', 'C09p32620' => 'bna', 'C09p44720' => 'bna', 'CAN.G1156.49' => 'can', 'CAN.G1181.1' => 'can', 'CAN.G424.26' => 'can', 'CAN.G424.28' => 'can', 'CAN.G433.19' => 'can', 'CANSAT01G0170' => 'cansat', 'CANSAT56G1894' => 'cansat', 'CANSAT56G3927' => 'cansat', 'CARHR204120' => 'chi', 'CARHR252470' => 'chi', 'CARHR267670' => 'chi', 'CARHR277900' => 'chi', 'CARHR277910' => 'chi', 'CARHR277920' => 'chi', 'Carub.0006s0784' => 'cru', 'Carub.0006s3305' => 'cru', 'Carub.0008s1472' => 'cru', 'Carub.0008s2476' => 'cru', 'Carub.0008s2477' => 'cru', 'Carub.0008s2478' => 'cru', 'Ca_00249_v3' => 'car', 'Ca_00275_v3' => 'car', 'Ca_18248_v3' => 'car', 'Ca_23097_v3' => 'car', 'Ca_29840_v3' => 'car', 'CBR_g10965' => 'cbr', 'CBR_g427' => 'cbr', 'Cc02_g12340' => 'ccan', 'Cc02_g12650' => 'ccan', 'Cc05_g12560' => 'ccan', 'Cc07_g18630' => 'ccan', 'CDE02G3173' => 'cde', 'CDE04G3754' => 'cde', 'CDE05G2691' => 'cde', 'CDE12G0704' => 'cde', 'Cfa000342' => 'cfa', 'Cfa000374' => 'cfa', 'Cfa001633' => 'cfa', 'Cfa002905' => 'cfa', 'Cfa020527' => 'cfa', 'Ciclev10001463m.g' => 'ccl', 'Ciclev10008644m.g' => 'ccl', 'Ciclev10015112m.g' => 'ccl', 'Ciclev10015399m.g' => 'ccl', 'CiPaw.03G120600' => 'cil', 'CiPaw.09G159900' => 'cil', 'CiPaw.10G117500' => 'cil', 'CiPaw.11G174700' => 'cil', 'ClCG01G015360' => 'cla', 'ClCG01G022470' => 'cla', 'ClCG03G005600' => 'cla', 'ClCG11G018360' => 'cla', 'COL.COLO4_09462' => 'col', 'COL.COLO4_31551' => 'col', 'COL.COLO4_31601' => 'col', 'COL.COLO4_35760' => 'col', 'Cpa.g.sc2554.1' => 'cpa', 'Cpa.g.sc27.102' => 'cpa', 'Cpa.g.sc27.134' => 'cpa', 'Cpa.g.sc42.165' => 'cpa', 'Cre01.g030250' => 'cre', 'Cre12.g501050' => 'cre', 'CsaV3_1G011860' => 'csa', 'CsaV3_3G044460' => 'csa', 'CsaV3_4G008560' => 'csa', 'CsaV3_6G041580' => 'csa', 'CsaV3_6G049640' => 'csa', 'CSS0011776' => 'camsi', 'CSS0015291' => 'camsi', 'CSS0018393' => 'camsi', 'CSS0018704' => 'camsi', 'CSS0027676' => 'camsi', 'DCAR_001208' => 'dca', 'DCAR_008064' => 'dca', 'DCAR_017157' => 'dca', 'DCAR_028145' => 'dca', 'Dinv07109' => 'din', 'Dinv08331' => 'din', 'Dinv18985' => 'din', 'Dinv20761' => 'din', 'Dinv24378' => 'din', 'Dinv24765' => 'din', 'Dinv39795' => 'din', 'Dinv40471' => 'din', 'Dinv40511' => 'din', 'Duzib116G0436' => 'dzi', 'Duzib187G0114' => 'dzi', 'Duzib192G0604' => 'dzi', 'Duzib213G0651' => 'dzi', 'Duzib235G0531' => 'dzi', 'Duzib235G1189' => 'dzi', 'Duzib264G0434' => 'dzi', 'ECA234G0676' => 'eca', 'ECA234G2407' => 'eca', 'ECA236G0140' => 'eca', 'EL10Ac4g08088' => 'bvu', 'EL10Ac8g20544' => 'bvu', 'EL10Ac8g20633' => 'bvu', 'Eucgr.E03818' => 'egr', 'Eucgr.F03343' => 'egr', 'Eucgr.G00577' => 'egr', 'Eucgr.I00195' => 'egr', 'FAN11G0341' => 'fan', 'FAN11G0383' => 'fan', 'FAN11G2753' => 'fan', 'FAN16G0535' => 'fan', 'FAN16G1788' => 'fan', 'FAN16G2544' => 'fan', 'FAN19G1763' => 'fan', 'FAN21G0538' => 'fan', 'FAN21G0587' => 'fan', 'FAN21G3488' => 'fan', 'FAN23G1447' => 'fan', 'FAN23G1742' => 'fan', 'FAN23G2296' => 'fan', 'FAN25G0315' => 'fan', 'FAN25G1363' => 'fan', 'FAN25G3062' => 'fan', 'FAN26G0081' => 'fan', 'FAN28G0182' => 'fan', 'FvH4_1g24470' => 'fve', 'FvH4_3g03790' => 'fve', 'FvH4_3g04430' => 'fve', 'FvH4_3g20770' => 'fve', 'Glyma.05G132200' => 'gma', 'Glyma.06G249500' => 'gma', 'Glyma.07G191500' => 'gma', 'Glyma.08G086800' => 'gma', 'Glyma.12G148400' => 'gma', 'Glyma.13G185200' => 'gma', 'Glyma.13G244900' => 'gma', 'Glyma.13G247100' => 'gma', 'Glyma.15G066900' => 'gma', 'Glyma.15G068800' => 'gma', 'Gohir.A01G067300' => 'ghi', 'Gohir.A04G103533' => 'ghi', 'Gohir.A04G103566' => 'ghi', 'Gohir.A05G166200' => 'ghi', 'Gohir.A05G256500' => 'ghi', 'Gohir.A06G123800' => 'ghi', 'Gohir.A09G004400' => 'ghi', 'Gohir.A09G019900' => 'ghi', 'Gohir.A10G021800' => 'ghi', 'Gohir.A10G022200' => 'ghi', 'Gohir.A10G156800' => 'ghi', 'Gohir.D01G054500' => 'ghi', 'Gohir.D05G169200' => 'ghi', 'Gohir.D06G128700' => 'ghi', 'Gohir.D09G003900' => 'ghi', 'Gohir.D09G019500' => 'ghi', 'Gohir.D10G022600' => 'ghi', 'Gohir.D10G023000' => 'ghi', 'Gohir.D10G108800' => 'ghi', 'Gorai.002G074400' => 'gra', 'Gorai.006G005300' => 'gra', 'Gorai.006G022900' => 'gra', 'Gorai.009G174400' => 'gra', 'Gorai.010G150200' => 'gra', 'Gorai.011G023700' => 'gra', 'Gorai.011G024100' => 'gra', 'Gorai.011G119100' => 'gra', 'GSVIVG01003661001' => 'vvi', 'GSVIVG01005836001' => 'vvi', 'GSVIVG01014412001' => 'vvi', 'GSVIVG01026471001' => 'vvi', 'HanXRQChr09g0259741' => 'han', 'HanXRQChr15g0494501' => 'han', 'HanXRQChr16g0517931' => 'han', 'HanXRQChr17g0552591' => 'han', 'Haze_06551' => 'cav', 'Haze_06589' => 'cav', 'Haze_25258' => 'cav', 'Hma1.2p1_0144F.1_g065020' => 'hma', 'Hma1.2p1_0539F.1_g174620' => 'hma', 'HPP92_005670' => 'vpl', 'HPP92_013157' => 'vpl', 'Hund04427' => 'sun', 'Hund23599' => 'sun', 'Hund27429' => 'sun', 'Hund27430' => 'sun', 'Lalb_Chr01g0006451' => 'lal', 'Lalb_Chr05g0218251' => 'lal', 'Lalb_Chr07g0188391' => 'lal', 'Lalb_Chr15g0090021' => 'lal', 'Lalb_Chr19g0134381' => 'lal', 'Lalb_Chr20g0122331' => 'lal', 'Lj1A1211T72' => 'lonja', 'Lj1A1214T67' => 'lonja', 'Lj1A851G60' => 'lonja', 'Lj2A282T44' => 'lonja', 'Lj3g0001024' => 'lja', 'Lj4A836G51' => 'lonja', 'Lj4C836T4' => 'lonja', 'Lj4g0003458' => 'lja', 'Lj4g0016822' => 'lja', 'Lj4g0024750' => 'lja', 'Lj6g0001591' => 'lja', 'Lj6g0007265' => 'lja', 'Lsat_1_v5_gn_4_137741' => 'lsa', 'Lsat_1_v5_gn_4_56081' => 'lsa', 'Lsat_1_v5_gn_4_56421' => 'lsa', 'Lsat_1_v5_gn_7_106201' => 'lsa', 'Manes.03G115100' => 'mes', 'Manes.12G156600' => 'mes', 'Manes.16G022600' => 'mes', 'Manes.17G033700' => 'mes', 'Mapoly0030s0063' => 'mpo', 'Mapoly0031s0113' => 'mpo', 'Mapoly0068s0099' => 'mpo', 'MBI02_g39535_MAGBIO' => 'mbi', 'MBI06_g27446_MAGBIO' => 'mbi', 'MBI18_g26906_MAGBIO' => 'mbi', 'MCO07G303' => 'mco', 'MCO08G277' => 'mco', 'MCO13G507' => 'mco', 'MD01G1008900' => 'mdo', 'MD03G1221700' => 'mdo', 'MD05G1323300' => 'mdo', 'MD05G1326400' => 'mdo', 'MD10G1301100' => 'mdo', 'MD10G1304400' => 'mdo', 'MD10G1304500' => 'mdo', 'MD11G1239100' => 'mdo', 'Medtr2g011680' => 'mtr', 'Medtr2g012510' => 'mtr', 'Medtr3g109970' => 'mtr', 'Medtr4g090525' => 'mtr', 'Medtr4g094672' => 'mtr', 'Medtr8g464260' => 'mtr', 'MELO3C002563.2' => 'cme', 'MELO3C007329.2' => 'cme', 'MELO3C008062.2' => 'cme', 'MELO3C018215.2' => 'cme', 'MELO3C030672.2' => 'cme', 'Migut.H00694' => 'egut', 'Migut.H01495' => 'egut', 'Migut.L00670' => 'egut', 'Migut.M00866' => 'egut', 'Migut.M01223' => 'egut', 'MSTRG.14695' => 'ama', 'MSTRG.15941' => 'ama', 'MSTRG.2644' => 'ama', 'MSTRG.6848' => 'ama', 'Nitab4.5_0000496g0090' => 'nta', 'Nitab4.5_0000649g0030' => 'nta', 'Nitab4.5_0000649g0100' => 'nta', 'Nitab4.5_0000662g0040' => 'nta', 'Nitab4.5_0001610g0010' => 'nta', 'Nitab4.5_0001967g0040' => 'nta', 'Nitab4.5_0003114g0090' => 'nta', 'Nitab4.5_0006694g0030' => 'nta', 'Nitab4.5_0006981g0010' => 'nta', 'Nitab4.5_0011268g0010' => 'nta', 'Nitab4.5_0011268g0020' => 'nta', 'Nitab4.5_0021992g0010' => 'nta', 'Nn1g03945' => 'nnu', 'Nn1g06698' => 'nnu', 'Nn1g06802' => 'nnu', 'Nn2g12165' => 'nnu', 'Nn3g16501' => 'nnu', 'Nn3g17606' => 'nnu', 'Nn4g23799' => 'nnu', 'Nn5g28107' => 'nnu', 'Nn5g28512' => 'nnu', 'Nn6g33905' => 'nnu', 'Nn7g37433' => 'nnu', 'Nn8g38977' => 'nnu', 'Oeu004238.1' => 'oeu', 'Oeu008024.1' => 'oeu', 'Oeu028416.1' => 'oeu', 'Oeu031649.1' => 'oeu', 'Oeu038207.1' => 'oeu', 'Oeu053966.2' => 'oeu', 'Oeu055675.1' => 'oeu', 'Oeu058291.1' => 'oeu', 'Os02g0805500' => 'osa', 'Os07g0558200' => 'osa', 'Os07g0558300' => 'osa', 'Os12g0183200' => 'osa', 'Os12g0183300' => 'osa', 'Peaxi162Scf00000g00498' => 'pax', 'Peaxi162Scf00525g00018' => 'pax', 'Peaxi162Scf00779g00210' => 'pax', 'Peaxi162Scf00779g00410' => 'pax', 'Peaxi162Scf00779g00412' => 'pax', 'PGR004G1129' => 'pgr', 'PGR031G3797' => 'pgr', 'PGR042G3840' => 'pgr', 'PGR119G0884' => 'pgr', 'PGSC0003DMG400008568' => 'stu', 'PGSC0003DMG400022370' => 'stu', 'PGSC0003DMG400023321' => 'stu', 'PGSC0003DMG400030007' => 'stu', 'Phvul.002G190600' => 'pvu', 'Phvul.002G223600' => 'pvu', 'Phvul.006G190400' => 'pvu', 'Phvul.006G192800' => 'pvu', 'Phvul.011G148400' => 'pvu', 'Potri.004G033200' => 'ptr', 'Potri.004G036400' => 'ptr', 'Potri.005G063900' => 'ptr', 'Potri.007G105100' => 'ptr', 'Potri.011G044900' => 'ptr', 'Potri.011G124700' => 'ptr', 'Pp3c13_15690' => 'ppa', 'Pp3c14_9660' => 'ppa', 'Pp3c15_5590' => 'ppa', 'Pp3c3_21240' => 'ppa', 'PRCOL_00001073' => 'pco', 'PRCOL_00001956' => 'pco', 'PRCOL_00004535' => 'pco', 'Prupe.4G035200' => 'ppe', 'Prupe.4G039300' => 'ppe', 'Prupe.4G187800' => 'ppe', 'Prupe.4G272000' => 'ppe', 'Psat1g207680' => 'psa', 'Psat1g209040' => 'psa', 'Psat4g173160' => 'psa', 'Psat7g088480' => 'psa', 'Psat7g111200' => 'psa', 'PSO079G0027' => 'pso', 'PSO170G6694' => 'pso', 'PSO423G0128' => 'pso', 'PSO528G0154' => 'pso', 'QL05p038543' => 'qlo', 'QL05p081050' => 'qlo', 'QL05p081056' => 'qlo', 'QL08p019034' => 'qlo', 'QL10p043423' => 'qlo', 'RcHm_v2.0_Chr2g0121661' => 'rch', 'RcHm_v2.0_Chr2g0121711' => 'rch', 'RcHm_v2.0_Chr2g0121731' => 'rch', 'RcHm_v2.0_Chr5g0006041' => 'rch', 'RcHm_v2.0_Chr5g0006821' => 'rch', 'RcHm_v2.0_Chr5g0035001' => 'rch', 'RcHm_v2.0_Chr7g0242171' => 'rch', 'Rhsim04G0018700' => 'rsi', 'Rhsim08G0002400' => 'rsi', 'Rhsim10G0134700' => 'rsi', 'Rhsim13G0175000' => 'rsi', 'Sabra04G0019000' => 'sbr', 'Sabra05G0053200' => 'sbr', 'Sabra11G0031200' => 'sbr', 'Sabra11G0109400' => 'sbr', 'SalBow1G4172' => 'sbo', 'SalBow1G4616' => 'sbo', 'SalBow7G2402' => 'sbo', 'SalBow8G0378' => 'sbo', 'SalBow8G3393' => 'sbo', 'Sc06g0003860' => 'sci', 'Sc06g0010650' => 'sci', 'Sc07g0001800' => 'sci', 'Sed0002135' => 'sed', 'Sed0005361' => 'sed', 'Sed0023425' => 'sed', 'Sed0027927' => 'sed', 'SEGI_00795' => 'sgi', 'SEGI_26343' => 'sgi', 'SEGI_35269' => 'sgi', 'SEGI_37268' => 'sgi', 'SGA_v2.0_scaffold159G37645' => 'sas', 'SGA_v2.0_scaffold370G50110' => 'sas', 'SGA_v2.0_scaffold73G24306' => 'sas', 'SGA_v2.0_scaffold7G03928' => 'sas', 'SHI11462' => 'shi', 'SHI11463' => 'shi', 'SHI30977' => 'shi', 'SHI33254' => 'shi', 'SHI33332' => 'shi', 'SHI34788' => 'shi', 'SHI49793' => 'shi', 'SMO134G0102' => 'smo', 'SMO200G0062' => 'smo', 'Solyc02g078860.3' => 'sly', 'Solyc02g079250.4' => 'sly', 'Solyc02g079270.4' => 'sly', 'Solyc04g016570.1' => 'sly', 'Solyc05g056490.4' => 'sly', 'Solyc12g013560.2' => 'sly', 'Sopen02g023680' => 'spe', 'Sopen02g024070' => 'spe', 'Sopen02g024090' => 'spe', 'Sopen05g034890' => 'spe', 'Sopen12g006920' => 'spe', 'Sp2g27050' => 'spa', 'Sp2g27060' => 'spa', 'Sp2g27070' => 'spa', 'Sp6g03900' => 'spa', 'Sp6g16400' => 'spa', 'TAR381G0336' => 'tar', 'TAR624G0534' => 'tar', 'TAR625G0855' => 'tar', 'TAR626G0779' => 'tar', 'TAR629G1200' => 'tar', 'THA.LOC104800114' => 'tha', 'THA.LOC104806271' => 'tha', 'THA.LOC104811851' => 'tha', 'THA.LOC104813658' => 'tha', 'THA.LOC104818427' => 'tha', 'THA.LOC104819342' => 'tha', 'THA.LOC104824893' => 'tha', 'Thecc.01G134000' => 'tca', 'Thecc.06G196000' => 'tca', 'Thecc.06G201200' => 'tca', 'Thecc.07G074400' => 'tca', 'Thhalv10004312m.g' => 'esa', 'Thhalv10004421m.g' => 'esa', 'Thhalv10004505m.g' => 'esa', 'Thhalv10013845m.g' => 'esa', 'Thhalv10013884m.g' => 'esa', 'Thhalv10028719m.g' => 'esa', 'TPR.G2929' => 'tpr', 'TPR.G29366' => 'tpr', 'TPR.G30449' => 'tpr', 'TPR.G32404' => 'tpr', 'TPR.G36734' => 'tpr', 'TPR.G36821' => 'tpr', 'TWI38G0457' => 'twi', 'TWI38G0548' => 'twi', 'TWI39G1022' => 'twi', 'TWI63G1131' => 'twi', 'TWI79G1082' => 'twi', 'unitig_37.g12335' => 'ugi', 'unitig_899.g14679' => 'ugi', 'vmacro03803' => 'vma', 'vmacro03805' => 'vma', 'vmacro09549' => 'vma', 'vmacro18671' => 'vma', 'vmacro22274' => 'vma', 'vmacro22276' => 'vma', 'VMungo0251G1464' => 'vmu', 'VMungo0251G2364' => 'vmu', 'VMungo0540G0628' => 'vmu', 'VMungo0540G1113' => 'vmu', 'VMungo0540G2005' => 'vmu', 'VMungo1127G0935' => 'vmu', 'Zm00001eb192000' => 'zma', 'Zm00001eb324080' => 'zma', 'Zm00001eb409060' => 'zma', 'Zm00001eb409080' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001100' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001100' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001100' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001100' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001100', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '556', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p10330' => 'bna', 'A02p43090' => 'bna', 'A02p43100' => 'bna', 'A03p48690' => 'bna', 'A06p21670' => 'bna', 'A06p30600' => 'bna', 'A06p30610' => 'bna', 'A06p30620' => 'bna', 'A08p33290' => 'bna', 'A09p08500' => 'bna', 'A09p25750' => 'bna', 'A10p11650' => 'bna', 'Aa31LG1G17920' => 'aar', 'Aa31LG3G10330' => 'aar', 'Aa31LG9G9330' => 'aar', 'Aa31LG9G9340' => 'aar', 'Aa31LG9G9350' => 'aar', 'Aa31LG9G9380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3377' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4235' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4236' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1404' => 'aag', 'Actinidia01386' => 'ach', 'Actinidia01923' => 'ach', 'Actinidia05567' => 'ach', 'Actinidia14799' => 'ach', 'Actinidia15936' => 'ach', 'Actinidia18753' => 'ach', 'Actinidia26988' => 'ach', 'Actinidia35270' => 'ach', 'Actinidia37011' => 'ach', 'Actinidia38824' => 'ach', 'Actinidia38866' => 'ach', 'Ah.04g165010' => 'amhyb', 'Ah.14g089050' => 'amhyb', 'AL6G19680' => 'aly', 'AL8G29730' => 'aly', 'AL8G41240' => 'aly', 'AL8G41250' => 'aly', 'AL8G41260' => 'aly', 'Aqoxy1G01118' => 'aox', 'Aqoxy1G02660' => 'aox', 'Aqoxy1G03915' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1HMN83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IT3ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK4CWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LMP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT4TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ18QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC667I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYCR2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4QVWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y92ER0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z42PVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8HAGL' => 'arhy', 'AT4G05090' => 'ath', 'AT5G09290' => 'ath', 'AT5G54390' => 'ath', 'AT5G63980' => 'ath', 'AT5G63990' => 'ath', 'AT5G64000' => 'ath', 'ATR0584G033' => 'atr', 'ATR0693G145' => 'atr', 'ATR0693G320' => 'atr', 'Atru.chr10.1979' => 'acertr', 'Atru.chr10.2023' => 'acertr', 'Atru.chr2.2814' => 'acertr', 'Atru.chr4.879' => 'acertr', 'AUR62003581' => 'cqu', 'AUR62012491' => 'cqu', 'AUR62014703' => 'cqu', 'AUR62014704' => 'cqu', 'AUR62014747' => 'cqu', 'AUR62015617' => 'cqu', 'AUR62016925' => 'cqu', 'AUR62017891' => 'cqu', 'AUR62017894' => 'cqu', 'AUR62029328' => 'cqu', 'AUR62029340' => 'cqu', 'AUR62043727' => 'cqu', 'BcaB01g01868' => 'bca', 'BcaB03g15312' => 'bca', 'BcaB05g22131' => 'bca', 'BcaB06g28342' => 'bca', 'BcaB07g29712' => 'bca', 'BcaB07g29714' => 'bca', 'BcaB08g35793' => 'bca', 'BcaC01g02653' => 'bca', 'BcaC03g14320' => 'bca', 'BcaC03g18235' => 'bca', 'BcaC03g18236' => 'bca', 'BcaC04g20341' => 'bca', 'BcaC04g21369' => 'bca', 'BolC2t07804H' => 'bol', 'BolC2t12379H' => 'bol', 'BolC2t12380H' => 'bol', 'BolC3t18496H' => 'bol', 'BolC5t34147H' => 'bol', 'BolC9t53874H' => 'bol', 'BolC9t56107H' => 'bol', 'BolC9t57345H' => 'bol', 'BraA02t06100Z' => 'bra', 'BraA06t25256Z' => 'bra', 'BraA06t26012Z' => 'bra', 'BraA09t36499Z' => 'bra', 'BraA09t38144Z' => 'bra', 'BraA10t43260Z' => 'bra', 'C02p17060' => 'bna', 'C02p63060' => 'bna', 'C02p63070' => 'bna', 'C03p62340' => 'bna', 'C03p62350' => 'bna', 'C03p62360' => 'bna', 'C09p09630' => 'bna', 'C09p32620' => 'bna', 'C09p44720' => 'bna', 'CAN.G1156.49' => 'can', 'CAN.G1181.1' => 'can', 'CAN.G424.26' => 'can', 'CAN.G424.28' => 'can', 'CAN.G433.19' => 'can', 'CANSAT01G0170' => 'cansat', 'CANSAT56G1894' => 'cansat', 'CANSAT56G3927' => 'cansat', 'CARHR204120' => 'chi', 'CARHR252470' => 'chi', 'CARHR267670' => 'chi', 'CARHR277900' => 'chi', 'CARHR277910' => 'chi', 'CARHR277920' => 'chi', 'Carub.0006s0784' => 'cru', 'Carub.0006s3305' => 'cru', 'Carub.0008s1472' => 'cru', 'Carub.0008s2476' => 'cru', 'Carub.0008s2477' => 'cru', 'Carub.0008s2478' => 'cru', 'Ca_00249_v3' => 'car', 'Ca_00275_v3' => 'car', 'Ca_18248_v3' => 'car', 'Ca_23097_v3' => 'car', 'Ca_29840_v3' => 'car', 'CBR_g10965' => 'cbr', 'CBR_g427' => 'cbr', 'Cc02_g12340' => 'ccan', 'Cc02_g12650' => 'ccan', 'Cc05_g12560' => 'ccan', 'Cc07_g18630' => 'ccan', 'CDE02G3173' => 'cde', 'CDE04G3754' => 'cde', 'CDE05G2691' => 'cde', 'CDE12G0704' => 'cde', 'Cfa000342' => 'cfa', 'Cfa000374' => 'cfa', 'Cfa001633' => 'cfa', 'Cfa002905' => 'cfa', 'Cfa020527' => 'cfa', 'Ciclev10001463m.g' => 'ccl', 'Ciclev10008644m.g' => 'ccl', 'Ciclev10015112m.g' => 'ccl', 'Ciclev10015399m.g' => 'ccl', 'CiPaw.03G120600' => 'cil', 'CiPaw.09G159900' => 'cil', 'CiPaw.10G117500' => 'cil', 'CiPaw.11G174700' => 'cil', 'ClCG01G015360' => 'cla', 'ClCG01G022470' => 'cla', 'ClCG03G005600' => 'cla', 'ClCG11G018360' => 'cla', 'COL.COLO4_09462' => 'col', 'COL.COLO4_31551' => 'col', 'COL.COLO4_31601' => 'col', 'COL.COLO4_35760' => 'col', 'Cpa.g.sc2554.1' => 'cpa', 'Cpa.g.sc27.102' => 'cpa', 'Cpa.g.sc27.134' => 'cpa', 'Cpa.g.sc42.165' => 'cpa', 'Cre01.g030250' => 'cre', 'Cre12.g501050' => 'cre', 'CsaV3_1G011860' => 'csa', 'CsaV3_3G044460' => 'csa', 'CsaV3_4G008560' => 'csa', 'CsaV3_6G041580' => 'csa', 'CsaV3_6G049640' => 'csa', 'CSS0011776' => 'camsi', 'CSS0015291' => 'camsi', 'CSS0018393' => 'camsi', 'CSS0018704' => 'camsi', 'CSS0027676' => 'camsi', 'DCAR_001208' => 'dca', 'DCAR_008064' => 'dca', 'DCAR_017157' => 'dca', 'DCAR_028145' => 'dca', 'Dinv07109' => 'din', 'Dinv08331' => 'din', 'Dinv18985' => 'din', 'Dinv20761' => 'din', 'Dinv24378' => 'din', 'Dinv24765' => 'din', 'Dinv39795' => 'din', 'Dinv40471' => 'din', 'Dinv40511' => 'din', 'Duzib116G0436' => 'dzi', 'Duzib187G0114' => 'dzi', 'Duzib192G0604' => 'dzi', 'Duzib213G0651' => 'dzi', 'Duzib235G0531' => 'dzi', 'Duzib235G1189' => 'dzi', 'Duzib264G0434' => 'dzi', 'ECA234G0676' => 'eca', 'ECA234G2407' => 'eca', 'ECA236G0140' => 'eca', 'EL10Ac4g08088' => 'bvu', 'EL10Ac8g20544' => 'bvu', 'EL10Ac8g20633' => 'bvu', 'Eucgr.E03818' => 'egr', 'Eucgr.F03343' => 'egr', 'Eucgr.G00577' => 'egr', 'Eucgr.I00195' => 'egr', 'FAN11G0341' => 'fan', 'FAN11G0383' => 'fan', 'FAN11G2753' => 'fan', 'FAN16G0535' => 'fan', 'FAN16G1788' => 'fan', 'FAN16G2544' => 'fan', 'FAN19G1763' => 'fan', 'FAN21G0538' => 'fan', 'FAN21G0587' => 'fan', 'FAN21G3488' => 'fan', 'FAN23G1447' => 'fan', 'FAN23G1742' => 'fan', 'FAN23G2296' => 'fan', 'FAN25G0315' => 'fan', 'FAN25G1363' => 'fan', 'FAN25G3062' => 'fan', 'FAN26G0081' => 'fan', 'FAN28G0182' => 'fan', 'FvH4_1g24470' => 'fve', 'FvH4_3g03790' => 'fve', 'FvH4_3g04430' => 'fve', 'FvH4_3g20770' => 'fve', 'Glyma.05G132200' => 'gma', 'Glyma.06G249500' => 'gma', 'Glyma.07G191500' => 'gma', 'Glyma.08G086800' => 'gma', 'Glyma.12G148400' => 'gma', 'Glyma.13G185200' => 'gma', 'Glyma.13G244900' => 'gma', 'Glyma.13G247100' => 'gma', 'Glyma.15G066900' => 'gma', 'Glyma.15G068800' => 'gma', 'Gohir.A01G067300' => 'ghi', 'Gohir.A04G103533' => 'ghi', 'Gohir.A04G103566' => 'ghi', 'Gohir.A05G166200' => 'ghi', 'Gohir.A05G256500' => 'ghi', 'Gohir.A06G123800' => 'ghi', 'Gohir.A09G004400' => 'ghi', 'Gohir.A09G019900' => 'ghi', 'Gohir.A10G021800' => 'ghi', 'Gohir.A10G022200' => 'ghi', 'Gohir.A10G156800' => 'ghi', 'Gohir.D01G054500' => 'ghi', 'Gohir.D05G169200' => 'ghi', 'Gohir.D06G128700' => 'ghi', 'Gohir.D09G003900' => 'ghi', 'Gohir.D09G019500' => 'ghi', 'Gohir.D10G022600' => 'ghi', 'Gohir.D10G023000' => 'ghi', 'Gohir.D10G108800' => 'ghi', 'Gorai.002G074400' => 'gra', 'Gorai.006G005300' => 'gra', 'Gorai.006G022900' => 'gra', 'Gorai.009G174400' => 'gra', 'Gorai.010G150200' => 'gra', 'Gorai.011G023700' => 'gra', 'Gorai.011G024100' => 'gra', 'Gorai.011G119100' => 'gra', 'GSVIVG01003661001' => 'vvi', 'GSVIVG01005836001' => 'vvi', 'GSVIVG01014412001' => 'vvi', 'GSVIVG01026471001' => 'vvi', 'HanXRQChr09g0259741' => 'han', 'HanXRQChr15g0494501' => 'han', 'HanXRQChr16g0517931' => 'han', 'HanXRQChr17g0552591' => 'han', 'Haze_06551' => 'cav', 'Haze_06589' => 'cav', 'Haze_25258' => 'cav', 'Hma1.2p1_0144F.1_g065020' => 'hma', 'Hma1.2p1_0539F.1_g174620' => 'hma', 'HPP92_005670' => 'vpl', 'HPP92_013157' => 'vpl', 'Hund04427' => 'sun', 'Hund23599' => 'sun', 'Hund27429' => 'sun', 'Hund27430' => 'sun', 'Lalb_Chr01g0006451' => 'lal', 'Lalb_Chr05g0218251' => 'lal', 'Lalb_Chr07g0188391' => 'lal', 'Lalb_Chr15g0090021' => 'lal', 'Lalb_Chr19g0134381' => 'lal', 'Lalb_Chr20g0122331' => 'lal', 'Lj1A1211T72' => 'lonja', 'Lj1A1214T67' => 'lonja', 'Lj1A851G60' => 'lonja', 'Lj2A282T44' => 'lonja', 'Lj3g0001024' => 'lja', 'Lj4A836G51' => 'lonja', 'Lj4C836T4' => 'lonja', 'Lj4g0003458' => 'lja', 'Lj4g0016822' => 'lja', 'Lj4g0024750' => 'lja', 'Lj6g0001591' => 'lja', 'Lj6g0007265' => 'lja', 'Lsat_1_v5_gn_4_137741' => 'lsa', 'Lsat_1_v5_gn_4_56081' => 'lsa', 'Lsat_1_v5_gn_4_56421' => 'lsa', 'Lsat_1_v5_gn_7_106201' => 'lsa', 'Manes.03G115100' => 'mes', 'Manes.12G156600' => 'mes', 'Manes.16G022600' => 'mes', 'Manes.17G033700' => 'mes', 'Mapoly0030s0063' => 'mpo', 'Mapoly0031s0113' => 'mpo', 'Mapoly0068s0099' => 'mpo', 'MBI02_g39535_MAGBIO' => 'mbi', 'MBI06_g27446_MAGBIO' => 'mbi', 'MBI18_g26906_MAGBIO' => 'mbi', 'MCO07G303' => 'mco', 'MCO08G277' => 'mco', 'MCO13G507' => 'mco', 'MD01G1008900' => 'mdo', 'MD03G1221700' => 'mdo', 'MD05G1323300' => 'mdo', 'MD05G1326400' => 'mdo', 'MD10G1301100' => 'mdo', 'MD10G1304400' => 'mdo', 'MD10G1304500' => 'mdo', 'MD11G1239100' => 'mdo', 'Medtr2g011680' => 'mtr', 'Medtr2g012510' => 'mtr', 'Medtr3g109970' => 'mtr', 'Medtr4g090525' => 'mtr', 'Medtr4g094672' => 'mtr', 'Medtr8g464260' => 'mtr', 'MELO3C002563.2' => 'cme', 'MELO3C007329.2' => 'cme', 'MELO3C008062.2' => 'cme', 'MELO3C018215.2' => 'cme', 'MELO3C030672.2' => 'cme', 'Migut.H00694' => 'egut', 'Migut.H01495' => 'egut', 'Migut.L00670' => 'egut', 'Migut.M00866' => 'egut', 'Migut.M01223' => 'egut', 'MSTRG.14695' => 'ama', 'MSTRG.15941' => 'ama', 'MSTRG.2644' => 'ama', 'MSTRG.6848' => 'ama', 'Nitab4.5_0000496g0090' => 'nta', 'Nitab4.5_0000649g0030' => 'nta', 'Nitab4.5_0000649g0100' => 'nta', 'Nitab4.5_0000662g0040' => 'nta', 'Nitab4.5_0001610g0010' => 'nta', 'Nitab4.5_0001967g0040' => 'nta', 'Nitab4.5_0003114g0090' => 'nta', 'Nitab4.5_0006694g0030' => 'nta', 'Nitab4.5_0006981g0010' => 'nta', 'Nitab4.5_0011268g0010' => 'nta', 'Nitab4.5_0011268g0020' => 'nta', 'Nitab4.5_0021992g0010' => 'nta', 'Nn1g03945' => 'nnu', 'Nn1g06698' => 'nnu', 'Nn1g06802' => 'nnu', 'Nn2g12165' => 'nnu', 'Nn3g16501' => 'nnu', 'Nn3g17606' => 'nnu', 'Nn4g23799' => 'nnu', 'Nn5g28107' => 'nnu', 'Nn5g28512' => 'nnu', 'Nn6g33905' => 'nnu', 'Nn7g37433' => 'nnu', 'Nn8g38977' => 'nnu', 'Oeu004238.1' => 'oeu', 'Oeu008024.1' => 'oeu', 'Oeu028416.1' => 'oeu', 'Oeu031649.1' => 'oeu', 'Oeu038207.1' => 'oeu', 'Oeu053966.2' => 'oeu', 'Oeu055675.1' => 'oeu', 'Oeu058291.1' => 'oeu', 'Os02g0805500' => 'osa', 'Os07g0558200' => 'osa', 'Os07g0558300' => 'osa', 'Os12g0183200' => 'osa', 'Os12g0183300' => 'osa', 'Peaxi162Scf00000g00498' => 'pax', 'Peaxi162Scf00525g00018' => 'pax', 'Peaxi162Scf00779g00210' => 'pax', 'Peaxi162Scf00779g00410' => 'pax', 'Peaxi162Scf00779g00412' => 'pax', 'PGR004G1129' => 'pgr', 'PGR031G3797' => 'pgr', 'PGR042G3840' => 'pgr', 'PGR119G0884' => 'pgr', 'PGSC0003DMG400008568' => 'stu', 'PGSC0003DMG400022370' => 'stu', 'PGSC0003DMG400023321' => 'stu', 'PGSC0003DMG400030007' => 'stu', 'Phvul.002G190600' => 'pvu', 'Phvul.002G223600' => 'pvu', 'Phvul.006G190400' => 'pvu', 'Phvul.006G192800' => 'pvu', 'Phvul.011G148400' => 'pvu', 'Potri.004G033200' => 'ptr', 'Potri.004G036400' => 'ptr', 'Potri.005G063900' => 'ptr', 'Potri.007G105100' => 'ptr', 'Potri.011G044900' => 'ptr', 'Potri.011G124700' => 'ptr', 'Pp3c13_15690' => 'ppa', 'Pp3c14_9660' => 'ppa', 'Pp3c15_5590' => 'ppa', 'Pp3c3_21240' => 'ppa', 'PRCOL_00001073' => 'pco', 'PRCOL_00001956' => 'pco', 'PRCOL_00004535' => 'pco', 'Prupe.4G035200' => 'ppe', 'Prupe.4G039300' => 'ppe', 'Prupe.4G187800' => 'ppe', 'Prupe.4G272000' => 'ppe', 'Psat1g207680' => 'psa', 'Psat1g209040' => 'psa', 'Psat4g173160' => 'psa', 'Psat7g088480' => 'psa', 'Psat7g111200' => 'psa', 'PSO079G0027' => 'pso', 'PSO170G6694' => 'pso', 'PSO423G0128' => 'pso', 'PSO528G0154' => 'pso', 'QL05p038543' => 'qlo', 'QL05p081050' => 'qlo', 'QL05p081056' => 'qlo', 'QL08p019034' => 'qlo', 'QL10p043423' => 'qlo', 'RcHm_v2.0_Chr2g0121661' => 'rch', 'RcHm_v2.0_Chr2g0121711' => 'rch', 'RcHm_v2.0_Chr2g0121731' => 'rch', 'RcHm_v2.0_Chr5g0006041' => 'rch', 'RcHm_v2.0_Chr5g0006821' => 'rch', 'RcHm_v2.0_Chr5g0035001' => 'rch', 'RcHm_v2.0_Chr7g0242171' => 'rch', 'Rhsim04G0018700' => 'rsi', 'Rhsim08G0002400' => 'rsi', 'Rhsim10G0134700' => 'rsi', 'Rhsim13G0175000' => 'rsi', 'Sabra04G0019000' => 'sbr', 'Sabra05G0053200' => 'sbr', 'Sabra11G0031200' => 'sbr', 'Sabra11G0109400' => 'sbr', 'SalBow1G4172' => 'sbo', 'SalBow1G4616' => 'sbo', 'SalBow7G2402' => 'sbo', 'SalBow8G0378' => 'sbo', 'SalBow8G3393' => 'sbo', 'Sc06g0003860' => 'sci', 'Sc06g0010650' => 'sci', 'Sc07g0001800' => 'sci', 'Sed0002135' => 'sed', 'Sed0005361' => 'sed', 'Sed0023425' => 'sed', 'Sed0027927' => 'sed', 'SEGI_00795' => 'sgi', 'SEGI_26343' => 'sgi', 'SEGI_35269' => 'sgi', 'SEGI_37268' => 'sgi', 'SGA_v2.0_scaffold159G37645' => 'sas', 'SGA_v2.0_scaffold370G50110' => 'sas', 'SGA_v2.0_scaffold73G24306' => 'sas', 'SGA_v2.0_scaffold7G03928' => 'sas', 'SHI11462' => 'shi', 'SHI11463' => 'shi', 'SHI30977' => 'shi', 'SHI33254' => 'shi', 'SHI33332' => 'shi', 'SHI34788' => 'shi', 'SHI49793' => 'shi', 'SMO134G0102' => 'smo', 'SMO200G0062' => 'smo', 'Solyc02g078860.3' => 'sly', 'Solyc02g079250.4' => 'sly', 'Solyc02g079270.4' => 'sly', 'Solyc04g016570.1' => 'sly', 'Solyc05g056490.4' => 'sly', 'Solyc12g013560.2' => 'sly', 'Sopen02g023680' => 'spe', 'Sopen02g024070' => 'spe', 'Sopen02g024090' => 'spe', 'Sopen05g034890' => 'spe', 'Sopen12g006920' => 'spe', 'Sp2g27050' => 'spa', 'Sp2g27060' => 'spa', 'Sp2g27070' => 'spa', 'Sp6g03900' => 'spa', 'Sp6g16400' => 'spa', 'TAR381G0336' => 'tar', 'TAR624G0534' => 'tar', 'TAR625G0855' => 'tar', 'TAR626G0779' => 'tar', 'TAR629G1200' => 'tar', 'THA.LOC104800114' => 'tha', 'THA.LOC104806271' => 'tha', 'THA.LOC104811851' => 'tha', 'THA.LOC104813658' => 'tha', 'THA.LOC104818427' => 'tha', 'THA.LOC104819342' => 'tha', 'THA.LOC104824893' => 'tha', 'Thecc.01G134000' => 'tca', 'Thecc.06G196000' => 'tca', 'Thecc.06G201200' => 'tca', 'Thecc.07G074400' => 'tca', 'Thhalv10004312m.g' => 'esa', 'Thhalv10004421m.g' => 'esa', 'Thhalv10004505m.g' => 'esa', 'Thhalv10013845m.g' => 'esa', 'Thhalv10013884m.g' => 'esa', 'Thhalv10028719m.g' => 'esa', 'TPR.G2929' => 'tpr', 'TPR.G29366' => 'tpr', 'TPR.G30449' => 'tpr', 'TPR.G32404' => 'tpr', 'TPR.G36734' => 'tpr', 'TPR.G36821' => 'tpr', 'TWI38G0457' => 'twi', 'TWI38G0548' => 'twi', 'TWI39G1022' => 'twi', 'TWI63G1131' => 'twi', 'TWI79G1082' => 'twi', 'unitig_37.g12335' => 'ugi', 'unitig_899.g14679' => 'ugi', 'vmacro03803' => 'vma', 'vmacro03805' => 'vma', 'vmacro09549' => 'vma', 'vmacro18671' => 'vma', 'vmacro22274' => 'vma', 'vmacro22276' => 'vma', 'VMungo0251G1464' => 'vmu', 'VMungo0251G2364' => 'vmu', 'VMungo0540G0628' => 'vmu', 'VMungo0540G1113' => 'vmu', 'VMungo0540G2005' => 'vmu', 'VMungo1127G0935' => 'vmu', 'Zm00001eb192000' => 'zma', 'Zm00001eb324080' => 'zma', 'Zm00001eb409060' => 'zma', 'Zm00001eb409080' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001100', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001100' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001100', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '556', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001100' ) ), 'genes' => array( 'A02p10330' => 'bna', 'A02p43090' => 'bna', 'A02p43100' => 'bna', 'A03p48690' => 'bna', 'A06p21670' => 'bna', 'A06p30600' => 'bna', 'A06p30610' => 'bna', 'A06p30620' => 'bna', 'A08p33290' => 'bna', 'A09p08500' => 'bna', 'A09p25750' => 'bna', 'A10p11650' => 'bna', 'Aa31LG1G17920' => 'aar', 'Aa31LG3G10330' => 'aar', 'Aa31LG9G9330' => 'aar', 'Aa31LG9G9340' => 'aar', 'Aa31LG9G9350' => 'aar', 'Aa31LG9G9380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3377' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4235' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4236' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1404' => 'aag', 'Actinidia01386' => 'ach', 'Actinidia01923' => 'ach', 'Actinidia05567' => 'ach', 'Actinidia14799' => 'ach', 'Actinidia15936' => 'ach', 'Actinidia18753' => 'ach', 'Actinidia26988' => 'ach', 'Actinidia35270' => 'ach', 'Actinidia37011' => 'ach', 'Actinidia38824' => 'ach', 'Actinidia38866' => 'ach', 'Ah.04g165010' => 'amhyb', 'Ah.14g089050' => 'amhyb', 'AL6G19680' => 'aly', 'AL8G29730' => 'aly', 'AL8G41240' => 'aly', 'AL8G41250' => 'aly', 'AL8G41260' => 'aly', 'Aqoxy1G01118' => 'aox', 'Aqoxy1G02660' => 'aox', 'Aqoxy1G03915' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1HMN83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IT3ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK4CWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LMP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT4TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ18QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC667I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYCR2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4QVWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y92ER0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z42PVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8HAGL' => 'arhy', 'AT4G05090' => 'ath', 'AT5G09290' => 'ath', 'AT5G54390' => 'ath', 'AT5G63980' => 'ath', 'AT5G63990' => 'ath', 'AT5G64000' => 'ath', 'ATR0584G033' => 'atr', 'ATR0693G145' => 'atr', 'ATR0693G320' => 'atr', 'Atru.chr10.1979' => 'acertr', 'Atru.chr10.2023' => 'acertr', 'Atru.chr2.2814' => 'acertr', 'Atru.chr4.879' => 'acertr', 'AUR62003581' => 'cqu', 'AUR62012491' => 'cqu', 'AUR62014703' => 'cqu', 'AUR62014704' => 'cqu', 'AUR62014747' => 'cqu', 'AUR62015617' => 'cqu', 'AUR62016925' => 'cqu', 'AUR62017891' => 'cqu', 'AUR62017894' => 'cqu', 'AUR62029328' => 'cqu', 'AUR62029340' => 'cqu', 'AUR62043727' => 'cqu', 'BcaB01g01868' => 'bca', 'BcaB03g15312' => 'bca', 'BcaB05g22131' => 'bca', 'BcaB06g28342' => 'bca', 'BcaB07g29712' => 'bca', 'BcaB07g29714' => 'bca', 'BcaB08g35793' => 'bca', 'BcaC01g02653' => 'bca', 'BcaC03g14320' => 'bca', 'BcaC03g18235' => 'bca', 'BcaC03g18236' => 'bca', 'BcaC04g20341' => 'bca', 'BcaC04g21369' => 'bca', 'BolC2t07804H' => 'bol', 'BolC2t12379H' => 'bol', 'BolC2t12380H' => 'bol', 'BolC3t18496H' => 'bol', 'BolC5t34147H' => 'bol', 'BolC9t53874H' => 'bol', 'BolC9t56107H' => 'bol', 'BolC9t57345H' => 'bol', 'BraA02t06100Z' => 'bra', 'BraA06t25256Z' => 'bra', 'BraA06t26012Z' => 'bra', 'BraA09t36499Z' => 'bra', 'BraA09t38144Z' => 'bra', 'BraA10t43260Z' => 'bra', 'C02p17060' => 'bna', 'C02p63060' => 'bna', 'C02p63070' => 'bna', 'C03p62340' => 'bna', 'C03p62350' => 'bna', 'C03p62360' => 'bna', 'C09p09630' => 'bna', 'C09p32620' => 'bna', 'C09p44720' => 'bna', 'CAN.G1156.49' => 'can', 'CAN.G1181.1' => 'can', 'CAN.G424.26' => 'can', 'CAN.G424.28' => 'can', 'CAN.G433.19' => 'can', 'CANSAT01G0170' => 'cansat', 'CANSAT56G1894' => 'cansat', 'CANSAT56G3927' => 'cansat', 'CARHR204120' => 'chi', 'CARHR252470' => 'chi', 'CARHR267670' => 'chi', 'CARHR277900' => 'chi', 'CARHR277910' => 'chi', 'CARHR277920' => 'chi', 'Carub.0006s0784' => 'cru', 'Carub.0006s3305' => 'cru', 'Carub.0008s1472' => 'cru', 'Carub.0008s2476' => 'cru', 'Carub.0008s2477' => 'cru', 'Carub.0008s2478' => 'cru', 'Ca_00249_v3' => 'car', 'Ca_00275_v3' => 'car', 'Ca_18248_v3' => 'car', 'Ca_23097_v3' => 'car', 'Ca_29840_v3' => 'car', 'CBR_g10965' => 'cbr', 'CBR_g427' => 'cbr', 'Cc02_g12340' => 'ccan', 'Cc02_g12650' => 'ccan', 'Cc05_g12560' => 'ccan', 'Cc07_g18630' => 'ccan', 'CDE02G3173' => 'cde', 'CDE04G3754' => 'cde', 'CDE05G2691' => 'cde', 'CDE12G0704' => 'cde', 'Cfa000342' => 'cfa', 'Cfa000374' => 'cfa', 'Cfa001633' => 'cfa', 'Cfa002905' => 'cfa', 'Cfa020527' => 'cfa', 'Ciclev10001463m.g' => 'ccl', 'Ciclev10008644m.g' => 'ccl', 'Ciclev10015112m.g' => 'ccl', 'Ciclev10015399m.g' => 'ccl', 'CiPaw.03G120600' => 'cil', 'CiPaw.09G159900' => 'cil', 'CiPaw.10G117500' => 'cil', 'CiPaw.11G174700' => 'cil', 'ClCG01G015360' => 'cla', 'ClCG01G022470' => 'cla', 'ClCG03G005600' => 'cla', 'ClCG11G018360' => 'cla', 'COL.COLO4_09462' => 'col', 'COL.COLO4_31551' => 'col', 'COL.COLO4_31601' => 'col', 'COL.COLO4_35760' => 'col', 'Cpa.g.sc2554.1' => 'cpa', 'Cpa.g.sc27.102' => 'cpa', 'Cpa.g.sc27.134' => 'cpa', 'Cpa.g.sc42.165' => 'cpa', 'Cre01.g030250' => 'cre', 'Cre12.g501050' => 'cre', 'CsaV3_1G011860' => 'csa', 'CsaV3_3G044460' => 'csa', 'CsaV3_4G008560' => 'csa', 'CsaV3_6G041580' => 'csa', 'CsaV3_6G049640' => 'csa', 'CSS0011776' => 'camsi', 'CSS0015291' => 'camsi', 'CSS0018393' => 'camsi', 'CSS0018704' => 'camsi', 'CSS0027676' => 'camsi', 'DCAR_001208' => 'dca', 'DCAR_008064' => 'dca', 'DCAR_017157' => 'dca', 'DCAR_028145' => 'dca', 'Dinv07109' => 'din', 'Dinv08331' => 'din', 'Dinv18985' => 'din', 'Dinv20761' => 'din', 'Dinv24378' => 'din', 'Dinv24765' => 'din', 'Dinv39795' => 'din', 'Dinv40471' => 'din', 'Dinv40511' => 'din', 'Duzib116G0436' => 'dzi', 'Duzib187G0114' => 'dzi', 'Duzib192G0604' => 'dzi', 'Duzib213G0651' => 'dzi', 'Duzib235G0531' => 'dzi', 'Duzib235G1189' => 'dzi', 'Duzib264G0434' => 'dzi', 'ECA234G0676' => 'eca', 'ECA234G2407' => 'eca', 'ECA236G0140' => 'eca', 'EL10Ac4g08088' => 'bvu', 'EL10Ac8g20544' => 'bvu', 'EL10Ac8g20633' => 'bvu', 'Eucgr.E03818' => 'egr', 'Eucgr.F03343' => 'egr', 'Eucgr.G00577' => 'egr', 'Eucgr.I00195' => 'egr', 'FAN11G0341' => 'fan', 'FAN11G0383' => 'fan', 'FAN11G2753' => 'fan', 'FAN16G0535' => 'fan', 'FAN16G1788' => 'fan', 'FAN16G2544' => 'fan', 'FAN19G1763' => 'fan', 'FAN21G0538' => 'fan', 'FAN21G0587' => 'fan', 'FAN21G3488' => 'fan', 'FAN23G1447' => 'fan', 'FAN23G1742' => 'fan', 'FAN23G2296' => 'fan', 'FAN25G0315' => 'fan', 'FAN25G1363' => 'fan', 'FAN25G3062' => 'fan', 'FAN26G0081' => 'fan', 'FAN28G0182' => 'fan', 'FvH4_1g24470' => 'fve', 'FvH4_3g03790' => 'fve', 'FvH4_3g04430' => 'fve', 'FvH4_3g20770' => 'fve', 'Glyma.05G132200' => 'gma', 'Glyma.06G249500' => 'gma', 'Glyma.07G191500' => 'gma', 'Glyma.08G086800' => 'gma', 'Glyma.12G148400' => 'gma', 'Glyma.13G185200' => 'gma', 'Glyma.13G244900' => 'gma', 'Glyma.13G247100' => 'gma', 'Glyma.15G066900' => 'gma', 'Glyma.15G068800' => 'gma', 'Gohir.A01G067300' => 'ghi', 'Gohir.A04G103533' => 'ghi', 'Gohir.A04G103566' => 'ghi', 'Gohir.A05G166200' => 'ghi', 'Gohir.A05G256500' => 'ghi', 'Gohir.A06G123800' => 'ghi', 'Gohir.A09G004400' => 'ghi', 'Gohir.A09G019900' => 'ghi', 'Gohir.A10G021800' => 'ghi', 'Gohir.A10G022200' => 'ghi', 'Gohir.A10G156800' => 'ghi', 'Gohir.D01G054500' => 'ghi', 'Gohir.D05G169200' => 'ghi', 'Gohir.D06G128700' => 'ghi', 'Gohir.D09G003900' => 'ghi', 'Gohir.D09G019500' => 'ghi', 'Gohir.D10G022600' => 'ghi', 'Gohir.D10G023000' => 'ghi', 'Gohir.D10G108800' => 'ghi', 'Gorai.002G074400' => 'gra', 'Gorai.006G005300' => 'gra', 'Gorai.006G022900' => 'gra', 'Gorai.009G174400' => 'gra', 'Gorai.010G150200' => 'gra', 'Gorai.011G023700' => 'gra', 'Gorai.011G024100' => 'gra', 'Gorai.011G119100' => 'gra', 'GSVIVG01003661001' => 'vvi', 'GSVIVG01005836001' => 'vvi', 'GSVIVG01014412001' => 'vvi', 'GSVIVG01026471001' => 'vvi', 'HanXRQChr09g0259741' => 'han', 'HanXRQChr15g0494501' => 'han', 'HanXRQChr16g0517931' => 'han', 'HanXRQChr17g0552591' => 'han', 'Haze_06551' => 'cav', 'Haze_06589' => 'cav', 'Haze_25258' => 'cav', 'Hma1.2p1_0144F.1_g065020' => 'hma', 'Hma1.2p1_0539F.1_g174620' => 'hma', 'HPP92_005670' => 'vpl', 'HPP92_013157' => 'vpl', 'Hund04427' => 'sun', 'Hund23599' => 'sun', 'Hund27429' => 'sun', 'Hund27430' => 'sun', 'Lalb_Chr01g0006451' => 'lal', 'Lalb_Chr05g0218251' => 'lal', 'Lalb_Chr07g0188391' => 'lal', 'Lalb_Chr15g0090021' => 'lal', 'Lalb_Chr19g0134381' => 'lal', 'Lalb_Chr20g0122331' => 'lal', 'Lj1A1211T72' => 'lonja', 'Lj1A1214T67' => 'lonja', 'Lj1A851G60' => 'lonja', 'Lj2A282T44' => 'lonja', 'Lj3g0001024' => 'lja', 'Lj4A836G51' => 'lonja', 'Lj4C836T4' => 'lonja', 'Lj4g0003458' => 'lja', 'Lj4g0016822' => 'lja', 'Lj4g0024750' => 'lja', 'Lj6g0001591' => 'lja', 'Lj6g0007265' => 'lja', 'Lsat_1_v5_gn_4_137741' => 'lsa', 'Lsat_1_v5_gn_4_56081' => 'lsa', 'Lsat_1_v5_gn_4_56421' => 'lsa', 'Lsat_1_v5_gn_7_106201' => 'lsa', 'Manes.03G115100' => 'mes', 'Manes.12G156600' => 'mes', 'Manes.16G022600' => 'mes', 'Manes.17G033700' => 'mes', 'Mapoly0030s0063' => 'mpo', 'Mapoly0031s0113' => 'mpo', 'Mapoly0068s0099' => 'mpo', 'MBI02_g39535_MAGBIO' => 'mbi', 'MBI06_g27446_MAGBIO' => 'mbi', 'MBI18_g26906_MAGBIO' => 'mbi', 'MCO07G303' => 'mco', 'MCO08G277' => 'mco', 'MCO13G507' => 'mco', 'MD01G1008900' => 'mdo', 'MD03G1221700' => 'mdo', 'MD05G1323300' => 'mdo', 'MD05G1326400' => 'mdo', 'MD10G1301100' => 'mdo', 'MD10G1304400' => 'mdo', 'MD10G1304500' => 'mdo', 'MD11G1239100' => 'mdo', 'Medtr2g011680' => 'mtr', 'Medtr2g012510' => 'mtr', 'Medtr3g109970' => 'mtr', 'Medtr4g090525' => 'mtr', 'Medtr4g094672' => 'mtr', 'Medtr8g464260' => 'mtr', 'MELO3C002563.2' => 'cme', 'MELO3C007329.2' => 'cme', 'MELO3C008062.2' => 'cme', 'MELO3C018215.2' => 'cme', 'MELO3C030672.2' => 'cme', 'Migut.H00694' => 'egut', 'Migut.H01495' => 'egut', 'Migut.L00670' => 'egut', 'Migut.M00866' => 'egut', 'Migut.M01223' => 'egut', 'MSTRG.14695' => 'ama', 'MSTRG.15941' => 'ama', 'MSTRG.2644' => 'ama', 'MSTRG.6848' => 'ama', 'Nitab4.5_0000496g0090' => 'nta', 'Nitab4.5_0000649g0030' => 'nta', 'Nitab4.5_0000649g0100' => 'nta', 'Nitab4.5_0000662g0040' => 'nta', 'Nitab4.5_0001610g0010' => 'nta', 'Nitab4.5_0001967g0040' => 'nta', 'Nitab4.5_0003114g0090' => 'nta', 'Nitab4.5_0006694g0030' => 'nta', 'Nitab4.5_0006981g0010' => 'nta', 'Nitab4.5_0011268g0010' => 'nta', 'Nitab4.5_0011268g0020' => 'nta', 'Nitab4.5_0021992g0010' => 'nta', 'Nn1g03945' => 'nnu', 'Nn1g06698' => 'nnu', 'Nn1g06802' => 'nnu', 'Nn2g12165' => 'nnu', 'Nn3g16501' => 'nnu', 'Nn3g17606' => 'nnu', 'Nn4g23799' => 'nnu', 'Nn5g28107' => 'nnu', 'Nn5g28512' => 'nnu', 'Nn6g33905' => 'nnu', 'Nn7g37433' => 'nnu', 'Nn8g38977' => 'nnu', 'Oeu004238.1' => 'oeu', 'Oeu008024.1' => 'oeu', 'Oeu028416.1' => 'oeu', 'Oeu031649.1' => 'oeu', 'Oeu038207.1' => 'oeu', 'Oeu053966.2' => 'oeu', 'Oeu055675.1' => 'oeu', 'Oeu058291.1' => 'oeu', 'Os02g0805500' => 'osa', 'Os07g0558200' => 'osa', 'Os07g0558300' => 'osa', 'Os12g0183200' => 'osa', 'Os12g0183300' => 'osa', 'Peaxi162Scf00000g00498' => 'pax', 'Peaxi162Scf00525g00018' => 'pax', 'Peaxi162Scf00779g00210' => 'pax', 'Peaxi162Scf00779g00410' => 'pax', 'Peaxi162Scf00779g00412' => 'pax', 'PGR004G1129' => 'pgr', 'PGR031G3797' => 'pgr', 'PGR042G3840' => 'pgr', 'PGR119G0884' => 'pgr', 'PGSC0003DMG400008568' => 'stu', 'PGSC0003DMG400022370' => 'stu', 'PGSC0003DMG400023321' => 'stu', 'PGSC0003DMG400030007' => 'stu', 'Phvul.002G190600' => 'pvu', 'Phvul.002G223600' => 'pvu', 'Phvul.006G190400' => 'pvu', 'Phvul.006G192800' => 'pvu', 'Phvul.011G148400' => 'pvu', 'Potri.004G033200' => 'ptr', 'Potri.004G036400' => 'ptr', 'Potri.005G063900' => 'ptr', 'Potri.007G105100' => 'ptr', 'Potri.011G044900' => 'ptr', 'Potri.011G124700' => 'ptr', 'Pp3c13_15690' => 'ppa', 'Pp3c14_9660' => 'ppa', 'Pp3c15_5590' => 'ppa', 'Pp3c3_21240' => 'ppa', 'PRCOL_00001073' => 'pco', 'PRCOL_00001956' => 'pco', 'PRCOL_00004535' => 'pco', 'Prupe.4G035200' => 'ppe', 'Prupe.4G039300' => 'ppe', 'Prupe.4G187800' => 'ppe', 'Prupe.4G272000' => 'ppe', 'Psat1g207680' => 'psa', 'Psat1g209040' => 'psa', 'Psat4g173160' => 'psa', 'Psat7g088480' => 'psa', 'Psat7g111200' => 'psa', 'PSO079G0027' => 'pso', 'PSO170G6694' => 'pso', 'PSO423G0128' => 'pso', 'PSO528G0154' => 'pso', 'QL05p038543' => 'qlo', 'QL05p081050' => 'qlo', 'QL05p081056' => 'qlo', 'QL08p019034' => 'qlo', 'QL10p043423' => 'qlo', 'RcHm_v2.0_Chr2g0121661' => 'rch', 'RcHm_v2.0_Chr2g0121711' => 'rch', 'RcHm_v2.0_Chr2g0121731' => 'rch', 'RcHm_v2.0_Chr5g0006041' => 'rch', 'RcHm_v2.0_Chr5g0006821' => 'rch', 'RcHm_v2.0_Chr5g0035001' => 'rch', 'RcHm_v2.0_Chr7g0242171' => 'rch', 'Rhsim04G0018700' => 'rsi', 'Rhsim08G0002400' => 'rsi', 'Rhsim10G0134700' => 'rsi', 'Rhsim13G0175000' => 'rsi', 'Sabra04G0019000' => 'sbr', 'Sabra05G0053200' => 'sbr', 'Sabra11G0031200' => 'sbr', 'Sabra11G0109400' => 'sbr', 'SalBow1G4172' => 'sbo', 'SalBow1G4616' => 'sbo', 'SalBow7G2402' => 'sbo', 'SalBow8G0378' => 'sbo', 'SalBow8G3393' => 'sbo', 'Sc06g0003860' => 'sci', 'Sc06g0010650' => 'sci', 'Sc07g0001800' => 'sci', 'Sed0002135' => 'sed', 'Sed0005361' => 'sed', 'Sed0023425' => 'sed', 'Sed0027927' => 'sed', 'SEGI_00795' => 'sgi', 'SEGI_26343' => 'sgi', 'SEGI_35269' => 'sgi', 'SEGI_37268' => 'sgi', 'SGA_v2.0_scaffold159G37645' => 'sas', 'SGA_v2.0_scaffold370G50110' => 'sas', 'SGA_v2.0_scaffold73G24306' => 'sas', 'SGA_v2.0_scaffold7G03928' => 'sas', 'SHI11462' => 'shi', 'SHI11463' => 'shi', 'SHI30977' => 'shi', 'SHI33254' => 'shi', 'SHI33332' => 'shi', 'SHI34788' => 'shi', 'SHI49793' => 'shi', 'SMO134G0102' => 'smo', 'SMO200G0062' => 'smo', 'Solyc02g078860.3' => 'sly', 'Solyc02g079250.4' => 'sly', 'Solyc02g079270.4' => 'sly', 'Solyc04g016570.1' => 'sly', 'Solyc05g056490.4' => 'sly', 'Solyc12g013560.2' => 'sly', 'Sopen02g023680' => 'spe', 'Sopen02g024070' => 'spe', 'Sopen02g024090' => 'spe', 'Sopen05g034890' => 'spe', 'Sopen12g006920' => 'spe', 'Sp2g27050' => 'spa', 'Sp2g27060' => 'spa', 'Sp2g27070' => 'spa', 'Sp6g03900' => 'spa', 'Sp6g16400' => 'spa', 'TAR381G0336' => 'tar', 'TAR624G0534' => 'tar', 'TAR625G0855' => 'tar', 'TAR626G0779' => 'tar', 'TAR629G1200' => 'tar', 'THA.LOC104800114' => 'tha', 'THA.LOC104806271' => 'tha', 'THA.LOC104811851' => 'tha', 'THA.LOC104813658' => 'tha', 'THA.LOC104818427' => 'tha', 'THA.LOC104819342' => 'tha', 'THA.LOC104824893' => 'tha', 'Thecc.01G134000' => 'tca', 'Thecc.06G196000' => 'tca', 'Thecc.06G201200' => 'tca', 'Thecc.07G074400' => 'tca', 'Thhalv10004312m.g' => 'esa', 'Thhalv10004421m.g' => 'esa', 'Thhalv10004505m.g' => 'esa', 'Thhalv10013845m.g' => 'esa', 'Thhalv10013884m.g' => 'esa', 'Thhalv10028719m.g' => 'esa', 'TPR.G2929' => 'tpr', 'TPR.G29366' => 'tpr', 'TPR.G30449' => 'tpr', 'TPR.G32404' => 'tpr', 'TPR.G36734' => 'tpr', 'TPR.G36821' => 'tpr', 'TWI38G0457' => 'twi', 'TWI38G0548' => 'twi', 'TWI39G1022' => 'twi', 'TWI63G1131' => 'twi', 'TWI79G1082' => 'twi', 'unitig_37.g12335' => 'ugi', 'unitig_899.g14679' => 'ugi', 'vmacro03803' => 'vma', 'vmacro03805' => 'vma', 'vmacro09549' => 'vma', 'vmacro18671' => 'vma', 'vmacro22274' => 'vma', 'vmacro22276' => 'vma', 'VMungo0251G1464' => 'vmu', 'VMungo0251G2364' => 'vmu', 'VMungo0540G0628' => 'vmu', 'VMungo0540G1113' => 'vmu', 'VMungo0540G2005' => 'vmu', 'VMungo1127G0935' => 'vmu', 'Zm00001eb192000' => 'zma', 'Zm00001eb324080' => 'zma', 'Zm00001eb409060' => 'zma', 'Zm00001eb409080' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001100' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001100' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001100' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001100' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001100', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '556', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p10330' => 'bna', 'A02p43090' => 'bna', 'A02p43100' => 'bna', 'A03p48690' => 'bna', 'A06p21670' => 'bna', 'A06p30600' => 'bna', 'A06p30610' => 'bna', 'A06p30620' => 'bna', 'A08p33290' => 'bna', 'A09p08500' => 'bna', 'A09p25750' => 'bna', 'A10p11650' => 'bna', 'Aa31LG1G17920' => 'aar', 'Aa31LG3G10330' => 'aar', 'Aa31LG9G9330' => 'aar', 'Aa31LG9G9340' => 'aar', 'Aa31LG9G9350' => 'aar', 'Aa31LG9G9380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3377' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4235' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4236' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1404' => 'aag', 'Actinidia01386' => 'ach', 'Actinidia01923' => 'ach', 'Actinidia05567' => 'ach', 'Actinidia14799' => 'ach', 'Actinidia15936' => 'ach', 'Actinidia18753' => 'ach', 'Actinidia26988' => 'ach', 'Actinidia35270' => 'ach', 'Actinidia37011' => 'ach', 'Actinidia38824' => 'ach', 'Actinidia38866' => 'ach', 'Ah.04g165010' => 'amhyb', 'Ah.14g089050' => 'amhyb', 'AL6G19680' => 'aly', 'AL8G29730' => 'aly', 'AL8G41240' => 'aly', 'AL8G41250' => 'aly', 'AL8G41260' => 'aly', 'Aqoxy1G01118' => 'aox', 'Aqoxy1G02660' => 'aox', 'Aqoxy1G03915' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1HMN83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IT3ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK4CWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LMP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT4TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ18QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC667I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYCR2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4QVWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y92ER0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z42PVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8HAGL' => 'arhy', 'AT4G05090' => 'ath', 'AT5G09290' => 'ath', 'AT5G54390' => 'ath', 'AT5G63980' => 'ath', 'AT5G63990' => 'ath', 'AT5G64000' => 'ath', 'ATR0584G033' => 'atr', 'ATR0693G145' => 'atr', 'ATR0693G320' => 'atr', 'Atru.chr10.1979' => 'acertr', 'Atru.chr10.2023' => 'acertr', 'Atru.chr2.2814' => 'acertr', 'Atru.chr4.879' => 'acertr', 'AUR62003581' => 'cqu', 'AUR62012491' => 'cqu', 'AUR62014703' => 'cqu', 'AUR62014704' => 'cqu', 'AUR62014747' => 'cqu', 'AUR62015617' => 'cqu', 'AUR62016925' => 'cqu', 'AUR62017891' => 'cqu', 'AUR62017894' => 'cqu', 'AUR62029328' => 'cqu', 'AUR62029340' => 'cqu', 'AUR62043727' => 'cqu', 'BcaB01g01868' => 'bca', 'BcaB03g15312' => 'bca', 'BcaB05g22131' => 'bca', 'BcaB06g28342' => 'bca', 'BcaB07g29712' => 'bca', 'BcaB07g29714' => 'bca', 'BcaB08g35793' => 'bca', 'BcaC01g02653' => 'bca', 'BcaC03g14320' => 'bca', 'BcaC03g18235' => 'bca', 'BcaC03g18236' => 'bca', 'BcaC04g20341' => 'bca', 'BcaC04g21369' => 'bca', 'BolC2t07804H' => 'bol', 'BolC2t12379H' => 'bol', 'BolC2t12380H' => 'bol', 'BolC3t18496H' => 'bol', 'BolC5t34147H' => 'bol', 'BolC9t53874H' => 'bol', 'BolC9t56107H' => 'bol', 'BolC9t57345H' => 'bol', 'BraA02t06100Z' => 'bra', 'BraA06t25256Z' => 'bra', 'BraA06t26012Z' => 'bra', 'BraA09t36499Z' => 'bra', 'BraA09t38144Z' => 'bra', 'BraA10t43260Z' => 'bra', 'C02p17060' => 'bna', 'C02p63060' => 'bna', 'C02p63070' => 'bna', 'C03p62340' => 'bna', 'C03p62350' => 'bna', 'C03p62360' => 'bna', 'C09p09630' => 'bna', 'C09p32620' => 'bna', 'C09p44720' => 'bna', 'CAN.G1156.49' => 'can', 'CAN.G1181.1' => 'can', 'CAN.G424.26' => 'can', 'CAN.G424.28' => 'can', 'CAN.G433.19' => 'can', 'CANSAT01G0170' => 'cansat', 'CANSAT56G1894' => 'cansat', 'CANSAT56G3927' => 'cansat', 'CARHR204120' => 'chi', 'CARHR252470' => 'chi', 'CARHR267670' => 'chi', 'CARHR277900' => 'chi', 'CARHR277910' => 'chi', 'CARHR277920' => 'chi', 'Carub.0006s0784' => 'cru', 'Carub.0006s3305' => 'cru', 'Carub.0008s1472' => 'cru', 'Carub.0008s2476' => 'cru', 'Carub.0008s2477' => 'cru', 'Carub.0008s2478' => 'cru', 'Ca_00249_v3' => 'car', 'Ca_00275_v3' => 'car', 'Ca_18248_v3' => 'car', 'Ca_23097_v3' => 'car', 'Ca_29840_v3' => 'car', 'CBR_g10965' => 'cbr', 'CBR_g427' => 'cbr', 'Cc02_g12340' => 'ccan', 'Cc02_g12650' => 'ccan', 'Cc05_g12560' => 'ccan', 'Cc07_g18630' => 'ccan', 'CDE02G3173' => 'cde', 'CDE04G3754' => 'cde', 'CDE05G2691' => 'cde', 'CDE12G0704' => 'cde', 'Cfa000342' => 'cfa', 'Cfa000374' => 'cfa', 'Cfa001633' => 'cfa', 'Cfa002905' => 'cfa', 'Cfa020527' => 'cfa', 'Ciclev10001463m.g' => 'ccl', 'Ciclev10008644m.g' => 'ccl', 'Ciclev10015112m.g' => 'ccl', 'Ciclev10015399m.g' => 'ccl', 'CiPaw.03G120600' => 'cil', 'CiPaw.09G159900' => 'cil', 'CiPaw.10G117500' => 'cil', 'CiPaw.11G174700' => 'cil', 'ClCG01G015360' => 'cla', 'ClCG01G022470' => 'cla', 'ClCG03G005600' => 'cla', 'ClCG11G018360' => 'cla', 'COL.COLO4_09462' => 'col', 'COL.COLO4_31551' => 'col', 'COL.COLO4_31601' => 'col', 'COL.COLO4_35760' => 'col', 'Cpa.g.sc2554.1' => 'cpa', 'Cpa.g.sc27.102' => 'cpa', 'Cpa.g.sc27.134' => 'cpa', 'Cpa.g.sc42.165' => 'cpa', 'Cre01.g030250' => 'cre', 'Cre12.g501050' => 'cre', 'CsaV3_1G011860' => 'csa', 'CsaV3_3G044460' => 'csa', 'CsaV3_4G008560' => 'csa', 'CsaV3_6G041580' => 'csa', 'CsaV3_6G049640' => 'csa', 'CSS0011776' => 'camsi', 'CSS0015291' => 'camsi', 'CSS0018393' => 'camsi', 'CSS0018704' => 'camsi', 'CSS0027676' => 'camsi', 'DCAR_001208' => 'dca', 'DCAR_008064' => 'dca', 'DCAR_017157' => 'dca', 'DCAR_028145' => 'dca', 'Dinv07109' => 'din', 'Dinv08331' => 'din', 'Dinv18985' => 'din', 'Dinv20761' => 'din', 'Dinv24378' => 'din', 'Dinv24765' => 'din', 'Dinv39795' => 'din', 'Dinv40471' => 'din', 'Dinv40511' => 'din', 'Duzib116G0436' => 'dzi', 'Duzib187G0114' => 'dzi', 'Duzib192G0604' => 'dzi', 'Duzib213G0651' => 'dzi', 'Duzib235G0531' => 'dzi', 'Duzib235G1189' => 'dzi', 'Duzib264G0434' => 'dzi', 'ECA234G0676' => 'eca', 'ECA234G2407' => 'eca', 'ECA236G0140' => 'eca', 'EL10Ac4g08088' => 'bvu', 'EL10Ac8g20544' => 'bvu', 'EL10Ac8g20633' => 'bvu', 'Eucgr.E03818' => 'egr', 'Eucgr.F03343' => 'egr', 'Eucgr.G00577' => 'egr', 'Eucgr.I00195' => 'egr', 'FAN11G0341' => 'fan', 'FAN11G0383' => 'fan', 'FAN11G2753' => 'fan', 'FAN16G0535' => 'fan', 'FAN16G1788' => 'fan', 'FAN16G2544' => 'fan', 'FAN19G1763' => 'fan', 'FAN21G0538' => 'fan', 'FAN21G0587' => 'fan', 'FAN21G3488' => 'fan', 'FAN23G1447' => 'fan', 'FAN23G1742' => 'fan', 'FAN23G2296' => 'fan', 'FAN25G0315' => 'fan', 'FAN25G1363' => 'fan', 'FAN25G3062' => 'fan', 'FAN26G0081' => 'fan', 'FAN28G0182' => 'fan', 'FvH4_1g24470' => 'fve', 'FvH4_3g03790' => 'fve', 'FvH4_3g04430' => 'fve', 'FvH4_3g20770' => 'fve', 'Glyma.05G132200' => 'gma', 'Glyma.06G249500' => 'gma', 'Glyma.07G191500' => 'gma', 'Glyma.08G086800' => 'gma', 'Glyma.12G148400' => 'gma', 'Glyma.13G185200' => 'gma', 'Glyma.13G244900' => 'gma', 'Glyma.13G247100' => 'gma', 'Glyma.15G066900' => 'gma', 'Glyma.15G068800' => 'gma', 'Gohir.A01G067300' => 'ghi', 'Gohir.A04G103533' => 'ghi', 'Gohir.A04G103566' => 'ghi', 'Gohir.A05G166200' => 'ghi', 'Gohir.A05G256500' => 'ghi', 'Gohir.A06G123800' => 'ghi', 'Gohir.A09G004400' => 'ghi', 'Gohir.A09G019900' => 'ghi', 'Gohir.A10G021800' => 'ghi', 'Gohir.A10G022200' => 'ghi', 'Gohir.A10G156800' => 'ghi', 'Gohir.D01G054500' => 'ghi', 'Gohir.D05G169200' => 'ghi', 'Gohir.D06G128700' => 'ghi', 'Gohir.D09G003900' => 'ghi', 'Gohir.D09G019500' => 'ghi', 'Gohir.D10G022600' => 'ghi', 'Gohir.D10G023000' => 'ghi', 'Gohir.D10G108800' => 'ghi', 'Gorai.002G074400' => 'gra', 'Gorai.006G005300' => 'gra', 'Gorai.006G022900' => 'gra', 'Gorai.009G174400' => 'gra', 'Gorai.010G150200' => 'gra', 'Gorai.011G023700' => 'gra', 'Gorai.011G024100' => 'gra', 'Gorai.011G119100' => 'gra', 'GSVIVG01003661001' => 'vvi', 'GSVIVG01005836001' => 'vvi', 'GSVIVG01014412001' => 'vvi', 'GSVIVG01026471001' => 'vvi', 'HanXRQChr09g0259741' => 'han', 'HanXRQChr15g0494501' => 'han', 'HanXRQChr16g0517931' => 'han', 'HanXRQChr17g0552591' => 'han', 'Haze_06551' => 'cav', 'Haze_06589' => 'cav', 'Haze_25258' => 'cav', 'Hma1.2p1_0144F.1_g065020' => 'hma', 'Hma1.2p1_0539F.1_g174620' => 'hma', 'HPP92_005670' => 'vpl', 'HPP92_013157' => 'vpl', 'Hund04427' => 'sun', 'Hund23599' => 'sun', 'Hund27429' => 'sun', 'Hund27430' => 'sun', 'Lalb_Chr01g0006451' => 'lal', 'Lalb_Chr05g0218251' => 'lal', 'Lalb_Chr07g0188391' => 'lal', 'Lalb_Chr15g0090021' => 'lal', 'Lalb_Chr19g0134381' => 'lal', 'Lalb_Chr20g0122331' => 'lal', 'Lj1A1211T72' => 'lonja', 'Lj1A1214T67' => 'lonja', 'Lj1A851G60' => 'lonja', 'Lj2A282T44' => 'lonja', 'Lj3g0001024' => 'lja', 'Lj4A836G51' => 'lonja', 'Lj4C836T4' => 'lonja', 'Lj4g0003458' => 'lja', 'Lj4g0016822' => 'lja', 'Lj4g0024750' => 'lja', 'Lj6g0001591' => 'lja', 'Lj6g0007265' => 'lja', 'Lsat_1_v5_gn_4_137741' => 'lsa', 'Lsat_1_v5_gn_4_56081' => 'lsa', 'Lsat_1_v5_gn_4_56421' => 'lsa', 'Lsat_1_v5_gn_7_106201' => 'lsa', 'Manes.03G115100' => 'mes', 'Manes.12G156600' => 'mes', 'Manes.16G022600' => 'mes', 'Manes.17G033700' => 'mes', 'Mapoly0030s0063' => 'mpo', 'Mapoly0031s0113' => 'mpo', 'Mapoly0068s0099' => 'mpo', 'MBI02_g39535_MAGBIO' => 'mbi', 'MBI06_g27446_MAGBIO' => 'mbi', 'MBI18_g26906_MAGBIO' => 'mbi', 'MCO07G303' => 'mco', 'MCO08G277' => 'mco', 'MCO13G507' => 'mco', 'MD01G1008900' => 'mdo', 'MD03G1221700' => 'mdo', 'MD05G1323300' => 'mdo', 'MD05G1326400' => 'mdo', 'MD10G1301100' => 'mdo', 'MD10G1304400' => 'mdo', 'MD10G1304500' => 'mdo', 'MD11G1239100' => 'mdo', 'Medtr2g011680' => 'mtr', 'Medtr2g012510' => 'mtr', 'Medtr3g109970' => 'mtr', 'Medtr4g090525' => 'mtr', 'Medtr4g094672' => 'mtr', 'Medtr8g464260' => 'mtr', 'MELO3C002563.2' => 'cme', 'MELO3C007329.2' => 'cme', 'MELO3C008062.2' => 'cme', 'MELO3C018215.2' => 'cme', 'MELO3C030672.2' => 'cme', 'Migut.H00694' => 'egut', 'Migut.H01495' => 'egut', 'Migut.L00670' => 'egut', 'Migut.M00866' => 'egut', 'Migut.M01223' => 'egut', 'MSTRG.14695' => 'ama', 'MSTRG.15941' => 'ama', 'MSTRG.2644' => 'ama', 'MSTRG.6848' => 'ama', 'Nitab4.5_0000496g0090' => 'nta', 'Nitab4.5_0000649g0030' => 'nta', 'Nitab4.5_0000649g0100' => 'nta', 'Nitab4.5_0000662g0040' => 'nta', 'Nitab4.5_0001610g0010' => 'nta', 'Nitab4.5_0001967g0040' => 'nta', 'Nitab4.5_0003114g0090' => 'nta', 'Nitab4.5_0006694g0030' => 'nta', 'Nitab4.5_0006981g0010' => 'nta', 'Nitab4.5_0011268g0010' => 'nta', 'Nitab4.5_0011268g0020' => 'nta', 'Nitab4.5_0021992g0010' => 'nta', 'Nn1g03945' => 'nnu', 'Nn1g06698' => 'nnu', 'Nn1g06802' => 'nnu', 'Nn2g12165' => 'nnu', 'Nn3g16501' => 'nnu', 'Nn3g17606' => 'nnu', 'Nn4g23799' => 'nnu', 'Nn5g28107' => 'nnu', 'Nn5g28512' => 'nnu', 'Nn6g33905' => 'nnu', 'Nn7g37433' => 'nnu', 'Nn8g38977' => 'nnu', 'Oeu004238.1' => 'oeu', 'Oeu008024.1' => 'oeu', 'Oeu028416.1' => 'oeu', 'Oeu031649.1' => 'oeu', 'Oeu038207.1' => 'oeu', 'Oeu053966.2' => 'oeu', 'Oeu055675.1' => 'oeu', 'Oeu058291.1' => 'oeu', 'Os02g0805500' => 'osa', 'Os07g0558200' => 'osa', 'Os07g0558300' => 'osa', 'Os12g0183200' => 'osa', 'Os12g0183300' => 'osa', 'Peaxi162Scf00000g00498' => 'pax', 'Peaxi162Scf00525g00018' => 'pax', 'Peaxi162Scf00779g00210' => 'pax', 'Peaxi162Scf00779g00410' => 'pax', 'Peaxi162Scf00779g00412' => 'pax', 'PGR004G1129' => 'pgr', 'PGR031G3797' => 'pgr', 'PGR042G3840' => 'pgr', 'PGR119G0884' => 'pgr', 'PGSC0003DMG400008568' => 'stu', 'PGSC0003DMG400022370' => 'stu', 'PGSC0003DMG400023321' => 'stu', 'PGSC0003DMG400030007' => 'stu', 'Phvul.002G190600' => 'pvu', 'Phvul.002G223600' => 'pvu', 'Phvul.006G190400' => 'pvu', 'Phvul.006G192800' => 'pvu', 'Phvul.011G148400' => 'pvu', 'Potri.004G033200' => 'ptr', 'Potri.004G036400' => 'ptr', 'Potri.005G063900' => 'ptr', 'Potri.007G105100' => 'ptr', 'Potri.011G044900' => 'ptr', 'Potri.011G124700' => 'ptr', 'Pp3c13_15690' => 'ppa', 'Pp3c14_9660' => 'ppa', 'Pp3c15_5590' => 'ppa', 'Pp3c3_21240' => 'ppa', 'PRCOL_00001073' => 'pco', 'PRCOL_00001956' => 'pco', 'PRCOL_00004535' => 'pco', 'Prupe.4G035200' => 'ppe', 'Prupe.4G039300' => 'ppe', 'Prupe.4G187800' => 'ppe', 'Prupe.4G272000' => 'ppe', 'Psat1g207680' => 'psa', 'Psat1g209040' => 'psa', 'Psat4g173160' => 'psa', 'Psat7g088480' => 'psa', 'Psat7g111200' => 'psa', 'PSO079G0027' => 'pso', 'PSO170G6694' => 'pso', 'PSO423G0128' => 'pso', 'PSO528G0154' => 'pso', 'QL05p038543' => 'qlo', 'QL05p081050' => 'qlo', 'QL05p081056' => 'qlo', 'QL08p019034' => 'qlo', 'QL10p043423' => 'qlo', 'RcHm_v2.0_Chr2g0121661' => 'rch', 'RcHm_v2.0_Chr2g0121711' => 'rch', 'RcHm_v2.0_Chr2g0121731' => 'rch', 'RcHm_v2.0_Chr5g0006041' => 'rch', 'RcHm_v2.0_Chr5g0006821' => 'rch', 'RcHm_v2.0_Chr5g0035001' => 'rch', 'RcHm_v2.0_Chr7g0242171' => 'rch', 'Rhsim04G0018700' => 'rsi', 'Rhsim08G0002400' => 'rsi', 'Rhsim10G0134700' => 'rsi', 'Rhsim13G0175000' => 'rsi', 'Sabra04G0019000' => 'sbr', 'Sabra05G0053200' => 'sbr', 'Sabra11G0031200' => 'sbr', 'Sabra11G0109400' => 'sbr', 'SalBow1G4172' => 'sbo', 'SalBow1G4616' => 'sbo', 'SalBow7G2402' => 'sbo', 'SalBow8G0378' => 'sbo', 'SalBow8G3393' => 'sbo', 'Sc06g0003860' => 'sci', 'Sc06g0010650' => 'sci', 'Sc07g0001800' => 'sci', 'Sed0002135' => 'sed', 'Sed0005361' => 'sed', 'Sed0023425' => 'sed', 'Sed0027927' => 'sed', 'SEGI_00795' => 'sgi', 'SEGI_26343' => 'sgi', 'SEGI_35269' => 'sgi', 'SEGI_37268' => 'sgi', 'SGA_v2.0_scaffold159G37645' => 'sas', 'SGA_v2.0_scaffold370G50110' => 'sas', 'SGA_v2.0_scaffold73G24306' => 'sas', 'SGA_v2.0_scaffold7G03928' => 'sas', 'SHI11462' => 'shi', 'SHI11463' => 'shi', 'SHI30977' => 'shi', 'SHI33254' => 'shi', 'SHI33332' => 'shi', 'SHI34788' => 'shi', 'SHI49793' => 'shi', 'SMO134G0102' => 'smo', 'SMO200G0062' => 'smo', 'Solyc02g078860.3' => 'sly', 'Solyc02g079250.4' => 'sly', 'Solyc02g079270.4' => 'sly', 'Solyc04g016570.1' => 'sly', 'Solyc05g056490.4' => 'sly', 'Solyc12g013560.2' => 'sly', 'Sopen02g023680' => 'spe', 'Sopen02g024070' => 'spe', 'Sopen02g024090' => 'spe', 'Sopen05g034890' => 'spe', 'Sopen12g006920' => 'spe', 'Sp2g27050' => 'spa', 'Sp2g27060' => 'spa', 'Sp2g27070' => 'spa', 'Sp6g03900' => 'spa', 'Sp6g16400' => 'spa', 'TAR381G0336' => 'tar', 'TAR624G0534' => 'tar', 'TAR625G0855' => 'tar', 'TAR626G0779' => 'tar', 'TAR629G1200' => 'tar', 'THA.LOC104800114' => 'tha', 'THA.LOC104806271' => 'tha', 'THA.LOC104811851' => 'tha', 'THA.LOC104813658' => 'tha', 'THA.LOC104818427' => 'tha', 'THA.LOC104819342' => 'tha', 'THA.LOC104824893' => 'tha', 'Thecc.01G134000' => 'tca', 'Thecc.06G196000' => 'tca', 'Thecc.06G201200' => 'tca', 'Thecc.07G074400' => 'tca', 'Thhalv10004312m.g' => 'esa', 'Thhalv10004421m.g' => 'esa', 'Thhalv10004505m.g' => 'esa', 'Thhalv10013845m.g' => 'esa', 'Thhalv10013884m.g' => 'esa', 'Thhalv10028719m.g' => 'esa', 'TPR.G2929' => 'tpr', 'TPR.G29366' => 'tpr', 'TPR.G30449' => 'tpr', 'TPR.G32404' => 'tpr', 'TPR.G36734' => 'tpr', 'TPR.G36821' => 'tpr', 'TWI38G0457' => 'twi', 'TWI38G0548' => 'twi', 'TWI39G1022' => 'twi', 'TWI63G1131' => 'twi', 'TWI79G1082' => 'twi', 'unitig_37.g12335' => 'ugi', 'unitig_899.g14679' => 'ugi', 'vmacro03803' => 'vma', 'vmacro03805' => 'vma', 'vmacro09549' => 'vma', 'vmacro18671' => 'vma', 'vmacro22274' => 'vma', 'vmacro22276' => 'vma', 'VMungo0251G1464' => 'vmu', 'VMungo0251G2364' => 'vmu', 'VMungo0540G0628' => 'vmu', 'VMungo0540G1113' => 'vmu', 'VMungo0540G2005' => 'vmu', 'VMungo1127G0935' => 'vmu', 'Zm00001eb192000' => 'zma', 'Zm00001eb324080' => 'zma', 'Zm00001eb409060' => 'zma', 'Zm00001eb409080' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001100', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001100' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001100', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '556', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001100' ) ), 'genes' => array( 'A02p10330' => 'bna', 'A02p43090' => 'bna', 'A02p43100' => 'bna', 'A03p48690' => 'bna', 'A06p21670' => 'bna', 'A06p30600' => 'bna', 'A06p30610' => 'bna', 'A06p30620' => 'bna', 'A08p33290' => 'bna', 'A09p08500' => 'bna', 'A09p25750' => 'bna', 'A10p11650' => 'bna', 'Aa31LG1G17920' => 'aar', 'Aa31LG3G10330' => 'aar', 'Aa31LG9G9330' => 'aar', 'Aa31LG9G9340' => 'aar', 'Aa31LG9G9350' => 'aar', 'Aa31LG9G9380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3377' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4235' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4236' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1404' => 'aag', 'Actinidia01386' => 'ach', 'Actinidia01923' => 'ach', 'Actinidia05567' => 'ach', 'Actinidia14799' => 'ach', 'Actinidia15936' => 'ach', 'Actinidia18753' => 'ach', 'Actinidia26988' => 'ach', 'Actinidia35270' => 'ach', 'Actinidia37011' => 'ach', 'Actinidia38824' => 'ach', 'Actinidia38866' => 'ach', 'Ah.04g165010' => 'amhyb', 'Ah.14g089050' => 'amhyb', 'AL6G19680' => 'aly', 'AL8G29730' => 'aly', 'AL8G41240' => 'aly', 'AL8G41250' => 'aly', 'AL8G41260' => 'aly', 'Aqoxy1G01118' => 'aox', 'Aqoxy1G02660' => 'aox', 'Aqoxy1G03915' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1HMN83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IT3ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK4CWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LMP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT4TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ18QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC667I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYCR2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4QVWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y92ER0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z42PVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8HAGL' => 'arhy', 'AT4G05090' => 'ath', 'AT5G09290' => 'ath', 'AT5G54390' => 'ath', 'AT5G63980' => 'ath', 'AT5G63990' => 'ath', 'AT5G64000' => 'ath', 'ATR0584G033' => 'atr', 'ATR0693G145' => 'atr', 'ATR0693G320' => 'atr', 'Atru.chr10.1979' => 'acertr', 'Atru.chr10.2023' => 'acertr', 'Atru.chr2.2814' => 'acertr', 'Atru.chr4.879' => 'acertr', 'AUR62003581' => 'cqu', 'AUR62012491' => 'cqu', 'AUR62014703' => 'cqu', 'AUR62014704' => 'cqu', 'AUR62014747' => 'cqu', 'AUR62015617' => 'cqu', 'AUR62016925' => 'cqu', 'AUR62017891' => 'cqu', 'AUR62017894' => 'cqu', 'AUR62029328' => 'cqu', 'AUR62029340' => 'cqu', 'AUR62043727' => 'cqu', 'BcaB01g01868' => 'bca', 'BcaB03g15312' => 'bca', 'BcaB05g22131' => 'bca', 'BcaB06g28342' => 'bca', 'BcaB07g29712' => 'bca', 'BcaB07g29714' => 'bca', 'BcaB08g35793' => 'bca', 'BcaC01g02653' => 'bca', 'BcaC03g14320' => 'bca', 'BcaC03g18235' => 'bca', 'BcaC03g18236' => 'bca', 'BcaC04g20341' => 'bca', 'BcaC04g21369' => 'bca', 'BolC2t07804H' => 'bol', 'BolC2t12379H' => 'bol', 'BolC2t12380H' => 'bol', 'BolC3t18496H' => 'bol', 'BolC5t34147H' => 'bol', 'BolC9t53874H' => 'bol', 'BolC9t56107H' => 'bol', 'BolC9t57345H' => 'bol', 'BraA02t06100Z' => 'bra', 'BraA06t25256Z' => 'bra', 'BraA06t26012Z' => 'bra', 'BraA09t36499Z' => 'bra', 'BraA09t38144Z' => 'bra', 'BraA10t43260Z' => 'bra', 'C02p17060' => 'bna', 'C02p63060' => 'bna', 'C02p63070' => 'bna', 'C03p62340' => 'bna', 'C03p62350' => 'bna', 'C03p62360' => 'bna', 'C09p09630' => 'bna', 'C09p32620' => 'bna', 'C09p44720' => 'bna', 'CAN.G1156.49' => 'can', 'CAN.G1181.1' => 'can', 'CAN.G424.26' => 'can', 'CAN.G424.28' => 'can', 'CAN.G433.19' => 'can', 'CANSAT01G0170' => 'cansat', 'CANSAT56G1894' => 'cansat', 'CANSAT56G3927' => 'cansat', 'CARHR204120' => 'chi', 'CARHR252470' => 'chi', 'CARHR267670' => 'chi', 'CARHR277900' => 'chi', 'CARHR277910' => 'chi', 'CARHR277920' => 'chi', 'Carub.0006s0784' => 'cru', 'Carub.0006s3305' => 'cru', 'Carub.0008s1472' => 'cru', 'Carub.0008s2476' => 'cru', 'Carub.0008s2477' => 'cru', 'Carub.0008s2478' => 'cru', 'Ca_00249_v3' => 'car', 'Ca_00275_v3' => 'car', 'Ca_18248_v3' => 'car', 'Ca_23097_v3' => 'car', 'Ca_29840_v3' => 'car', 'CBR_g10965' => 'cbr', 'CBR_g427' => 'cbr', 'Cc02_g12340' => 'ccan', 'Cc02_g12650' => 'ccan', 'Cc05_g12560' => 'ccan', 'Cc07_g18630' => 'ccan', 'CDE02G3173' => 'cde', 'CDE04G3754' => 'cde', 'CDE05G2691' => 'cde', 'CDE12G0704' => 'cde', 'Cfa000342' => 'cfa', 'Cfa000374' => 'cfa', 'Cfa001633' => 'cfa', 'Cfa002905' => 'cfa', 'Cfa020527' => 'cfa', 'Ciclev10001463m.g' => 'ccl', 'Ciclev10008644m.g' => 'ccl', 'Ciclev10015112m.g' => 'ccl', 'Ciclev10015399m.g' => 'ccl', 'CiPaw.03G120600' => 'cil', 'CiPaw.09G159900' => 'cil', 'CiPaw.10G117500' => 'cil', 'CiPaw.11G174700' => 'cil', 'ClCG01G015360' => 'cla', 'ClCG01G022470' => 'cla', 'ClCG03G005600' => 'cla', 'ClCG11G018360' => 'cla', 'COL.COLO4_09462' => 'col', 'COL.COLO4_31551' => 'col', 'COL.COLO4_31601' => 'col', 'COL.COLO4_35760' => 'col', 'Cpa.g.sc2554.1' => 'cpa', 'Cpa.g.sc27.102' => 'cpa', 'Cpa.g.sc27.134' => 'cpa', 'Cpa.g.sc42.165' => 'cpa', 'Cre01.g030250' => 'cre', 'Cre12.g501050' => 'cre', 'CsaV3_1G011860' => 'csa', 'CsaV3_3G044460' => 'csa', 'CsaV3_4G008560' => 'csa', 'CsaV3_6G041580' => 'csa', 'CsaV3_6G049640' => 'csa', 'CSS0011776' => 'camsi', 'CSS0015291' => 'camsi', 'CSS0018393' => 'camsi', 'CSS0018704' => 'camsi', 'CSS0027676' => 'camsi', 'DCAR_001208' => 'dca', 'DCAR_008064' => 'dca', 'DCAR_017157' => 'dca', 'DCAR_028145' => 'dca', 'Dinv07109' => 'din', 'Dinv08331' => 'din', 'Dinv18985' => 'din', 'Dinv20761' => 'din', 'Dinv24378' => 'din', 'Dinv24765' => 'din', 'Dinv39795' => 'din', 'Dinv40471' => 'din', 'Dinv40511' => 'din', 'Duzib116G0436' => 'dzi', 'Duzib187G0114' => 'dzi', 'Duzib192G0604' => 'dzi', 'Duzib213G0651' => 'dzi', 'Duzib235G0531' => 'dzi', 'Duzib235G1189' => 'dzi', 'Duzib264G0434' => 'dzi', 'ECA234G0676' => 'eca', 'ECA234G2407' => 'eca', 'ECA236G0140' => 'eca', 'EL10Ac4g08088' => 'bvu', 'EL10Ac8g20544' => 'bvu', 'EL10Ac8g20633' => 'bvu', 'Eucgr.E03818' => 'egr', 'Eucgr.F03343' => 'egr', 'Eucgr.G00577' => 'egr', 'Eucgr.I00195' => 'egr', 'FAN11G0341' => 'fan', 'FAN11G0383' => 'fan', 'FAN11G2753' => 'fan', 'FAN16G0535' => 'fan', 'FAN16G1788' => 'fan', 'FAN16G2544' => 'fan', 'FAN19G1763' => 'fan', 'FAN21G0538' => 'fan', 'FAN21G0587' => 'fan', 'FAN21G3488' => 'fan', 'FAN23G1447' => 'fan', 'FAN23G1742' => 'fan', 'FAN23G2296' => 'fan', 'FAN25G0315' => 'fan', 'FAN25G1363' => 'fan', 'FAN25G3062' => 'fan', 'FAN26G0081' => 'fan', 'FAN28G0182' => 'fan', 'FvH4_1g24470' => 'fve', 'FvH4_3g03790' => 'fve', 'FvH4_3g04430' => 'fve', 'FvH4_3g20770' => 'fve', 'Glyma.05G132200' => 'gma', 'Glyma.06G249500' => 'gma', 'Glyma.07G191500' => 'gma', 'Glyma.08G086800' => 'gma', 'Glyma.12G148400' => 'gma', 'Glyma.13G185200' => 'gma', 'Glyma.13G244900' => 'gma', 'Glyma.13G247100' => 'gma', 'Glyma.15G066900' => 'gma', 'Glyma.15G068800' => 'gma', 'Gohir.A01G067300' => 'ghi', 'Gohir.A04G103533' => 'ghi', 'Gohir.A04G103566' => 'ghi', 'Gohir.A05G166200' => 'ghi', 'Gohir.A05G256500' => 'ghi', 'Gohir.A06G123800' => 'ghi', 'Gohir.A09G004400' => 'ghi', 'Gohir.A09G019900' => 'ghi', 'Gohir.A10G021800' => 'ghi', 'Gohir.A10G022200' => 'ghi', 'Gohir.A10G156800' => 'ghi', 'Gohir.D01G054500' => 'ghi', 'Gohir.D05G169200' => 'ghi', 'Gohir.D06G128700' => 'ghi', 'Gohir.D09G003900' => 'ghi', 'Gohir.D09G019500' => 'ghi', 'Gohir.D10G022600' => 'ghi', 'Gohir.D10G023000' => 'ghi', 'Gohir.D10G108800' => 'ghi', 'Gorai.002G074400' => 'gra', 'Gorai.006G005300' => 'gra', 'Gorai.006G022900' => 'gra', 'Gorai.009G174400' => 'gra', 'Gorai.010G150200' => 'gra', 'Gorai.011G023700' => 'gra', 'Gorai.011G024100' => 'gra', 'Gorai.011G119100' => 'gra', 'GSVIVG01003661001' => 'vvi', 'GSVIVG01005836001' => 'vvi', 'GSVIVG01014412001' => 'vvi', 'GSVIVG01026471001' => 'vvi', 'HanXRQChr09g0259741' => 'han', 'HanXRQChr15g0494501' => 'han', 'HanXRQChr16g0517931' => 'han', 'HanXRQChr17g0552591' => 'han', 'Haze_06551' => 'cav', 'Haze_06589' => 'cav', 'Haze_25258' => 'cav', 'Hma1.2p1_0144F.1_g065020' => 'hma', 'Hma1.2p1_0539F.1_g174620' => 'hma', 'HPP92_005670' => 'vpl', 'HPP92_013157' => 'vpl', 'Hund04427' => 'sun', 'Hund23599' => 'sun', 'Hund27429' => 'sun', 'Hund27430' => 'sun', 'Lalb_Chr01g0006451' => 'lal', 'Lalb_Chr05g0218251' => 'lal', 'Lalb_Chr07g0188391' => 'lal', 'Lalb_Chr15g0090021' => 'lal', 'Lalb_Chr19g0134381' => 'lal', 'Lalb_Chr20g0122331' => 'lal', 'Lj1A1211T72' => 'lonja', 'Lj1A1214T67' => 'lonja', 'Lj1A851G60' => 'lonja', 'Lj2A282T44' => 'lonja', 'Lj3g0001024' => 'lja', 'Lj4A836G51' => 'lonja', 'Lj4C836T4' => 'lonja', 'Lj4g0003458' => 'lja', 'Lj4g0016822' => 'lja', 'Lj4g0024750' => 'lja', 'Lj6g0001591' => 'lja', 'Lj6g0007265' => 'lja', 'Lsat_1_v5_gn_4_137741' => 'lsa', 'Lsat_1_v5_gn_4_56081' => 'lsa', 'Lsat_1_v5_gn_4_56421' => 'lsa', 'Lsat_1_v5_gn_7_106201' => 'lsa', 'Manes.03G115100' => 'mes', 'Manes.12G156600' => 'mes', 'Manes.16G022600' => 'mes', 'Manes.17G033700' => 'mes', 'Mapoly0030s0063' => 'mpo', 'Mapoly0031s0113' => 'mpo', 'Mapoly0068s0099' => 'mpo', 'MBI02_g39535_MAGBIO' => 'mbi', 'MBI06_g27446_MAGBIO' => 'mbi', 'MBI18_g26906_MAGBIO' => 'mbi', 'MCO07G303' => 'mco', 'MCO08G277' => 'mco', 'MCO13G507' => 'mco', 'MD01G1008900' => 'mdo', 'MD03G1221700' => 'mdo', 'MD05G1323300' => 'mdo', 'MD05G1326400' => 'mdo', 'MD10G1301100' => 'mdo', 'MD10G1304400' => 'mdo', 'MD10G1304500' => 'mdo', 'MD11G1239100' => 'mdo', 'Medtr2g011680' => 'mtr', 'Medtr2g012510' => 'mtr', 'Medtr3g109970' => 'mtr', 'Medtr4g090525' => 'mtr', 'Medtr4g094672' => 'mtr', 'Medtr8g464260' => 'mtr', 'MELO3C002563.2' => 'cme', 'MELO3C007329.2' => 'cme', 'MELO3C008062.2' => 'cme', 'MELO3C018215.2' => 'cme', 'MELO3C030672.2' => 'cme', 'Migut.H00694' => 'egut', 'Migut.H01495' => 'egut', 'Migut.L00670' => 'egut', 'Migut.M00866' => 'egut', 'Migut.M01223' => 'egut', 'MSTRG.14695' => 'ama', 'MSTRG.15941' => 'ama', 'MSTRG.2644' => 'ama', 'MSTRG.6848' => 'ama', 'Nitab4.5_0000496g0090' => 'nta', 'Nitab4.5_0000649g0030' => 'nta', 'Nitab4.5_0000649g0100' => 'nta', 'Nitab4.5_0000662g0040' => 'nta', 'Nitab4.5_0001610g0010' => 'nta', 'Nitab4.5_0001967g0040' => 'nta', 'Nitab4.5_0003114g0090' => 'nta', 'Nitab4.5_0006694g0030' => 'nta', 'Nitab4.5_0006981g0010' => 'nta', 'Nitab4.5_0011268g0010' => 'nta', 'Nitab4.5_0011268g0020' => 'nta', 'Nitab4.5_0021992g0010' => 'nta', 'Nn1g03945' => 'nnu', 'Nn1g06698' => 'nnu', 'Nn1g06802' => 'nnu', 'Nn2g12165' => 'nnu', 'Nn3g16501' => 'nnu', 'Nn3g17606' => 'nnu', 'Nn4g23799' => 'nnu', 'Nn5g28107' => 'nnu', 'Nn5g28512' => 'nnu', 'Nn6g33905' => 'nnu', 'Nn7g37433' => 'nnu', 'Nn8g38977' => 'nnu', 'Oeu004238.1' => 'oeu', 'Oeu008024.1' => 'oeu', 'Oeu028416.1' => 'oeu', 'Oeu031649.1' => 'oeu', 'Oeu038207.1' => 'oeu', 'Oeu053966.2' => 'oeu', 'Oeu055675.1' => 'oeu', 'Oeu058291.1' => 'oeu', 'Os02g0805500' => 'osa', 'Os07g0558200' => 'osa', 'Os07g0558300' => 'osa', 'Os12g0183200' => 'osa', 'Os12g0183300' => 'osa', 'Peaxi162Scf00000g00498' => 'pax', 'Peaxi162Scf00525g00018' => 'pax', 'Peaxi162Scf00779g00210' => 'pax', 'Peaxi162Scf00779g00410' => 'pax', 'Peaxi162Scf00779g00412' => 'pax', 'PGR004G1129' => 'pgr', 'PGR031G3797' => 'pgr', 'PGR042G3840' => 'pgr', 'PGR119G0884' => 'pgr', 'PGSC0003DMG400008568' => 'stu', 'PGSC0003DMG400022370' => 'stu', 'PGSC0003DMG400023321' => 'stu', 'PGSC0003DMG400030007' => 'stu', 'Phvul.002G190600' => 'pvu', 'Phvul.002G223600' => 'pvu', 'Phvul.006G190400' => 'pvu', 'Phvul.006G192800' => 'pvu', 'Phvul.011G148400' => 'pvu', 'Potri.004G033200' => 'ptr', 'Potri.004G036400' => 'ptr', 'Potri.005G063900' => 'ptr', 'Potri.007G105100' => 'ptr', 'Potri.011G044900' => 'ptr', 'Potri.011G124700' => 'ptr', 'Pp3c13_15690' => 'ppa', 'Pp3c14_9660' => 'ppa', 'Pp3c15_5590' => 'ppa', 'Pp3c3_21240' => 'ppa', 'PRCOL_00001073' => 'pco', 'PRCOL_00001956' => 'pco', 'PRCOL_00004535' => 'pco', 'Prupe.4G035200' => 'ppe', 'Prupe.4G039300' => 'ppe', 'Prupe.4G187800' => 'ppe', 'Prupe.4G272000' => 'ppe', 'Psat1g207680' => 'psa', 'Psat1g209040' => 'psa', 'Psat4g173160' => 'psa', 'Psat7g088480' => 'psa', 'Psat7g111200' => 'psa', 'PSO079G0027' => 'pso', 'PSO170G6694' => 'pso', 'PSO423G0128' => 'pso', 'PSO528G0154' => 'pso', 'QL05p038543' => 'qlo', 'QL05p081050' => 'qlo', 'QL05p081056' => 'qlo', 'QL08p019034' => 'qlo', 'QL10p043423' => 'qlo', 'RcHm_v2.0_Chr2g0121661' => 'rch', 'RcHm_v2.0_Chr2g0121711' => 'rch', 'RcHm_v2.0_Chr2g0121731' => 'rch', 'RcHm_v2.0_Chr5g0006041' => 'rch', 'RcHm_v2.0_Chr5g0006821' => 'rch', 'RcHm_v2.0_Chr5g0035001' => 'rch', 'RcHm_v2.0_Chr7g0242171' => 'rch', 'Rhsim04G0018700' => 'rsi', 'Rhsim08G0002400' => 'rsi', 'Rhsim10G0134700' => 'rsi', 'Rhsim13G0175000' => 'rsi', 'Sabra04G0019000' => 'sbr', 'Sabra05G0053200' => 'sbr', 'Sabra11G0031200' => 'sbr', 'Sabra11G0109400' => 'sbr', 'SalBow1G4172' => 'sbo', 'SalBow1G4616' => 'sbo', 'SalBow7G2402' => 'sbo', 'SalBow8G0378' => 'sbo', 'SalBow8G3393' => 'sbo', 'Sc06g0003860' => 'sci', 'Sc06g0010650' => 'sci', 'Sc07g0001800' => 'sci', 'Sed0002135' => 'sed', 'Sed0005361' => 'sed', 'Sed0023425' => 'sed', 'Sed0027927' => 'sed', 'SEGI_00795' => 'sgi', 'SEGI_26343' => 'sgi', 'SEGI_35269' => 'sgi', 'SEGI_37268' => 'sgi', 'SGA_v2.0_scaffold159G37645' => 'sas', 'SGA_v2.0_scaffold370G50110' => 'sas', 'SGA_v2.0_scaffold73G24306' => 'sas', 'SGA_v2.0_scaffold7G03928' => 'sas', 'SHI11462' => 'shi', 'SHI11463' => 'shi', 'SHI30977' => 'shi', 'SHI33254' => 'shi', 'SHI33332' => 'shi', 'SHI34788' => 'shi', 'SHI49793' => 'shi', 'SMO134G0102' => 'smo', 'SMO200G0062' => 'smo', 'Solyc02g078860.3' => 'sly', 'Solyc02g079250.4' => 'sly', 'Solyc02g079270.4' => 'sly', 'Solyc04g016570.1' => 'sly', 'Solyc05g056490.4' => 'sly', 'Solyc12g013560.2' => 'sly', 'Sopen02g023680' => 'spe', 'Sopen02g024070' => 'spe', 'Sopen02g024090' => 'spe', 'Sopen05g034890' => 'spe', 'Sopen12g006920' => 'spe', 'Sp2g27050' => 'spa', 'Sp2g27060' => 'spa', 'Sp2g27070' => 'spa', 'Sp6g03900' => 'spa', 'Sp6g16400' => 'spa', 'TAR381G0336' => 'tar', 'TAR624G0534' => 'tar', 'TAR625G0855' => 'tar', 'TAR626G0779' => 'tar', 'TAR629G1200' => 'tar', 'THA.LOC104800114' => 'tha', 'THA.LOC104806271' => 'tha', 'THA.LOC104811851' => 'tha', 'THA.LOC104813658' => 'tha', 'THA.LOC104818427' => 'tha', 'THA.LOC104819342' => 'tha', 'THA.LOC104824893' => 'tha', 'Thecc.01G134000' => 'tca', 'Thecc.06G196000' => 'tca', 'Thecc.06G201200' => 'tca', 'Thecc.07G074400' => 'tca', 'Thhalv10004312m.g' => 'esa', 'Thhalv10004421m.g' => 'esa', 'Thhalv10004505m.g' => 'esa', 'Thhalv10013845m.g' => 'esa', 'Thhalv10013884m.g' => 'esa', 'Thhalv10028719m.g' => 'esa', 'TPR.G2929' => 'tpr', 'TPR.G29366' => 'tpr', 'TPR.G30449' => 'tpr', 'TPR.G32404' => 'tpr', 'TPR.G36734' => 'tpr', 'TPR.G36821' => 'tpr', 'TWI38G0457' => 'twi', 'TWI38G0548' => 'twi', 'TWI39G1022' => 'twi', 'TWI63G1131' => 'twi', 'TWI79G1082' => 'twi', 'unitig_37.g12335' => 'ugi', 'unitig_899.g14679' => 'ugi', 'vmacro03803' => 'vma', 'vmacro03805' => 'vma', 'vmacro09549' => 'vma', 'vmacro18671' => 'vma', 'vmacro22274' => 'vma', 'vmacro22276' => 'vma', 'VMungo0251G1464' => 'vmu', 'VMungo0251G2364' => 'vmu', 'VMungo0540G0628' => 'vmu', 'VMungo0540G1113' => 'vmu', 'VMungo0540G2005' => 'vmu', 'VMungo1127G0935' => 'vmu', 'Zm00001eb192000' => 'zma', 'Zm00001eb324080' => 'zma', 'Zm00001eb409060' => 'zma', 'Zm00001eb409080' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001100' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001100' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001100' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001100' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001100', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '556', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p10330' => 'bna', 'A02p43090' => 'bna', 'A02p43100' => 'bna', 'A03p48690' => 'bna', 'A06p21670' => 'bna', 'A06p30600' => 'bna', 'A06p30610' => 'bna', 'A06p30620' => 'bna', 'A08p33290' => 'bna', 'A09p08500' => 'bna', 'A09p25750' => 'bna', 'A10p11650' => 'bna', 'Aa31LG1G17920' => 'aar', 'Aa31LG3G10330' => 'aar', 'Aa31LG9G9330' => 'aar', 'Aa31LG9G9340' => 'aar', 'Aa31LG9G9350' => 'aar', 'Aa31LG9G9380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3377' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4235' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4236' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1404' => 'aag', 'Actinidia01386' => 'ach', 'Actinidia01923' => 'ach', 'Actinidia05567' => 'ach', 'Actinidia14799' => 'ach', 'Actinidia15936' => 'ach', 'Actinidia18753' => 'ach', 'Actinidia26988' => 'ach', 'Actinidia35270' => 'ach', 'Actinidia37011' => 'ach', 'Actinidia38824' => 'ach', 'Actinidia38866' => 'ach', 'Ah.04g165010' => 'amhyb', 'Ah.14g089050' => 'amhyb', 'AL6G19680' => 'aly', 'AL8G29730' => 'aly', 'AL8G41240' => 'aly', 'AL8G41250' => 'aly', 'AL8G41260' => 'aly', 'Aqoxy1G01118' => 'aox', 'Aqoxy1G02660' => 'aox', 'Aqoxy1G03915' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1HMN83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IT3ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK4CWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LMP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT4TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ18QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC667I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYCR2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4QVWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y92ER0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z42PVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8HAGL' => 'arhy', 'AT4G05090' => 'ath', 'AT5G09290' => 'ath', 'AT5G54390' => 'ath', 'AT5G63980' => 'ath', 'AT5G63990' => 'ath', 'AT5G64000' => 'ath', 'ATR0584G033' => 'atr', 'ATR0693G145' => 'atr', 'ATR0693G320' => 'atr', 'Atru.chr10.1979' => 'acertr', 'Atru.chr10.2023' => 'acertr', 'Atru.chr2.2814' => 'acertr', 'Atru.chr4.879' => 'acertr', 'AUR62003581' => 'cqu', 'AUR62012491' => 'cqu', 'AUR62014703' => 'cqu', 'AUR62014704' => 'cqu', 'AUR62014747' => 'cqu', 'AUR62015617' => 'cqu', 'AUR62016925' => 'cqu', 'AUR62017891' => 'cqu', 'AUR62017894' => 'cqu', 'AUR62029328' => 'cqu', 'AUR62029340' => 'cqu', 'AUR62043727' => 'cqu', 'BcaB01g01868' => 'bca', 'BcaB03g15312' => 'bca', 'BcaB05g22131' => 'bca', 'BcaB06g28342' => 'bca', 'BcaB07g29712' => 'bca', 'BcaB07g29714' => 'bca', 'BcaB08g35793' => 'bca', 'BcaC01g02653' => 'bca', 'BcaC03g14320' => 'bca', 'BcaC03g18235' => 'bca', 'BcaC03g18236' => 'bca', 'BcaC04g20341' => 'bca', 'BcaC04g21369' => 'bca', 'BolC2t07804H' => 'bol', 'BolC2t12379H' => 'bol', 'BolC2t12380H' => 'bol', 'BolC3t18496H' => 'bol', 'BolC5t34147H' => 'bol', 'BolC9t53874H' => 'bol', 'BolC9t56107H' => 'bol', 'BolC9t57345H' => 'bol', 'BraA02t06100Z' => 'bra', 'BraA06t25256Z' => 'bra', 'BraA06t26012Z' => 'bra', 'BraA09t36499Z' => 'bra', 'BraA09t38144Z' => 'bra', 'BraA10t43260Z' => 'bra', 'C02p17060' => 'bna', 'C02p63060' => 'bna', 'C02p63070' => 'bna', 'C03p62340' => 'bna', 'C03p62350' => 'bna', 'C03p62360' => 'bna', 'C09p09630' => 'bna', 'C09p32620' => 'bna', 'C09p44720' => 'bna', 'CAN.G1156.49' => 'can', 'CAN.G1181.1' => 'can', 'CAN.G424.26' => 'can', 'CAN.G424.28' => 'can', 'CAN.G433.19' => 'can', 'CANSAT01G0170' => 'cansat', 'CANSAT56G1894' => 'cansat', 'CANSAT56G3927' => 'cansat', 'CARHR204120' => 'chi', 'CARHR252470' => 'chi', 'CARHR267670' => 'chi', 'CARHR277900' => 'chi', 'CARHR277910' => 'chi', 'CARHR277920' => 'chi', 'Carub.0006s0784' => 'cru', 'Carub.0006s3305' => 'cru', 'Carub.0008s1472' => 'cru', 'Carub.0008s2476' => 'cru', 'Carub.0008s2477' => 'cru', 'Carub.0008s2478' => 'cru', 'Ca_00249_v3' => 'car', 'Ca_00275_v3' => 'car', 'Ca_18248_v3' => 'car', 'Ca_23097_v3' => 'car', 'Ca_29840_v3' => 'car', 'CBR_g10965' => 'cbr', 'CBR_g427' => 'cbr', 'Cc02_g12340' => 'ccan', 'Cc02_g12650' => 'ccan', 'Cc05_g12560' => 'ccan', 'Cc07_g18630' => 'ccan', 'CDE02G3173' => 'cde', 'CDE04G3754' => 'cde', 'CDE05G2691' => 'cde', 'CDE12G0704' => 'cde', 'Cfa000342' => 'cfa', 'Cfa000374' => 'cfa', 'Cfa001633' => 'cfa', 'Cfa002905' => 'cfa', 'Cfa020527' => 'cfa', 'Ciclev10001463m.g' => 'ccl', 'Ciclev10008644m.g' => 'ccl', 'Ciclev10015112m.g' => 'ccl', 'Ciclev10015399m.g' => 'ccl', 'CiPaw.03G120600' => 'cil', 'CiPaw.09G159900' => 'cil', 'CiPaw.10G117500' => 'cil', 'CiPaw.11G174700' => 'cil', 'ClCG01G015360' => 'cla', 'ClCG01G022470' => 'cla', 'ClCG03G005600' => 'cla', 'ClCG11G018360' => 'cla', 'COL.COLO4_09462' => 'col', 'COL.COLO4_31551' => 'col', 'COL.COLO4_31601' => 'col', 'COL.COLO4_35760' => 'col', 'Cpa.g.sc2554.1' => 'cpa', 'Cpa.g.sc27.102' => 'cpa', 'Cpa.g.sc27.134' => 'cpa', 'Cpa.g.sc42.165' => 'cpa', 'Cre01.g030250' => 'cre', 'Cre12.g501050' => 'cre', 'CsaV3_1G011860' => 'csa', 'CsaV3_3G044460' => 'csa', 'CsaV3_4G008560' => 'csa', 'CsaV3_6G041580' => 'csa', 'CsaV3_6G049640' => 'csa', 'CSS0011776' => 'camsi', 'CSS0015291' => 'camsi', 'CSS0018393' => 'camsi', 'CSS0018704' => 'camsi', 'CSS0027676' => 'camsi', 'DCAR_001208' => 'dca', 'DCAR_008064' => 'dca', 'DCAR_017157' => 'dca', 'DCAR_028145' => 'dca', 'Dinv07109' => 'din', 'Dinv08331' => 'din', 'Dinv18985' => 'din', 'Dinv20761' => 'din', 'Dinv24378' => 'din', 'Dinv24765' => 'din', 'Dinv39795' => 'din', 'Dinv40471' => 'din', 'Dinv40511' => 'din', 'Duzib116G0436' => 'dzi', 'Duzib187G0114' => 'dzi', 'Duzib192G0604' => 'dzi', 'Duzib213G0651' => 'dzi', 'Duzib235G0531' => 'dzi', 'Duzib235G1189' => 'dzi', 'Duzib264G0434' => 'dzi', 'ECA234G0676' => 'eca', 'ECA234G2407' => 'eca', 'ECA236G0140' => 'eca', 'EL10Ac4g08088' => 'bvu', 'EL10Ac8g20544' => 'bvu', 'EL10Ac8g20633' => 'bvu', 'Eucgr.E03818' => 'egr', 'Eucgr.F03343' => 'egr', 'Eucgr.G00577' => 'egr', 'Eucgr.I00195' => 'egr', 'FAN11G0341' => 'fan', 'FAN11G0383' => 'fan', 'FAN11G2753' => 'fan', 'FAN16G0535' => 'fan', 'FAN16G1788' => 'fan', 'FAN16G2544' => 'fan', 'FAN19G1763' => 'fan', 'FAN21G0538' => 'fan', 'FAN21G0587' => 'fan', 'FAN21G3488' => 'fan', 'FAN23G1447' => 'fan', 'FAN23G1742' => 'fan', 'FAN23G2296' => 'fan', 'FAN25G0315' => 'fan', 'FAN25G1363' => 'fan', 'FAN25G3062' => 'fan', 'FAN26G0081' => 'fan', 'FAN28G0182' => 'fan', 'FvH4_1g24470' => 'fve', 'FvH4_3g03790' => 'fve', 'FvH4_3g04430' => 'fve', 'FvH4_3g20770' => 'fve', 'Glyma.05G132200' => 'gma', 'Glyma.06G249500' => 'gma', 'Glyma.07G191500' => 'gma', 'Glyma.08G086800' => 'gma', 'Glyma.12G148400' => 'gma', 'Glyma.13G185200' => 'gma', 'Glyma.13G244900' => 'gma', 'Glyma.13G247100' => 'gma', 'Glyma.15G066900' => 'gma', 'Glyma.15G068800' => 'gma', 'Gohir.A01G067300' => 'ghi', 'Gohir.A04G103533' => 'ghi', 'Gohir.A04G103566' => 'ghi', 'Gohir.A05G166200' => 'ghi', 'Gohir.A05G256500' => 'ghi', 'Gohir.A06G123800' => 'ghi', 'Gohir.A09G004400' => 'ghi', 'Gohir.A09G019900' => 'ghi', 'Gohir.A10G021800' => 'ghi', 'Gohir.A10G022200' => 'ghi', 'Gohir.A10G156800' => 'ghi', 'Gohir.D01G054500' => 'ghi', 'Gohir.D05G169200' => 'ghi', 'Gohir.D06G128700' => 'ghi', 'Gohir.D09G003900' => 'ghi', 'Gohir.D09G019500' => 'ghi', 'Gohir.D10G022600' => 'ghi', 'Gohir.D10G023000' => 'ghi', 'Gohir.D10G108800' => 'ghi', 'Gorai.002G074400' => 'gra', 'Gorai.006G005300' => 'gra', 'Gorai.006G022900' => 'gra', 'Gorai.009G174400' => 'gra', 'Gorai.010G150200' => 'gra', 'Gorai.011G023700' => 'gra', 'Gorai.011G024100' => 'gra', 'Gorai.011G119100' => 'gra', 'GSVIVG01003661001' => 'vvi', 'GSVIVG01005836001' => 'vvi', 'GSVIVG01014412001' => 'vvi', 'GSVIVG01026471001' => 'vvi', 'HanXRQChr09g0259741' => 'han', 'HanXRQChr15g0494501' => 'han', 'HanXRQChr16g0517931' => 'han', 'HanXRQChr17g0552591' => 'han', 'Haze_06551' => 'cav', 'Haze_06589' => 'cav', 'Haze_25258' => 'cav', 'Hma1.2p1_0144F.1_g065020' => 'hma', 'Hma1.2p1_0539F.1_g174620' => 'hma', 'HPP92_005670' => 'vpl', 'HPP92_013157' => 'vpl', 'Hund04427' => 'sun', 'Hund23599' => 'sun', 'Hund27429' => 'sun', 'Hund27430' => 'sun', 'Lalb_Chr01g0006451' => 'lal', 'Lalb_Chr05g0218251' => 'lal', 'Lalb_Chr07g0188391' => 'lal', 'Lalb_Chr15g0090021' => 'lal', 'Lalb_Chr19g0134381' => 'lal', 'Lalb_Chr20g0122331' => 'lal', 'Lj1A1211T72' => 'lonja', 'Lj1A1214T67' => 'lonja', 'Lj1A851G60' => 'lonja', 'Lj2A282T44' => 'lonja', 'Lj3g0001024' => 'lja', 'Lj4A836G51' => 'lonja', 'Lj4C836T4' => 'lonja', 'Lj4g0003458' => 'lja', 'Lj4g0016822' => 'lja', 'Lj4g0024750' => 'lja', 'Lj6g0001591' => 'lja', 'Lj6g0007265' => 'lja', 'Lsat_1_v5_gn_4_137741' => 'lsa', 'Lsat_1_v5_gn_4_56081' => 'lsa', 'Lsat_1_v5_gn_4_56421' => 'lsa', 'Lsat_1_v5_gn_7_106201' => 'lsa', 'Manes.03G115100' => 'mes', 'Manes.12G156600' => 'mes', 'Manes.16G022600' => 'mes', 'Manes.17G033700' => 'mes', 'Mapoly0030s0063' => 'mpo', 'Mapoly0031s0113' => 'mpo', 'Mapoly0068s0099' => 'mpo', 'MBI02_g39535_MAGBIO' => 'mbi', 'MBI06_g27446_MAGBIO' => 'mbi', 'MBI18_g26906_MAGBIO' => 'mbi', 'MCO07G303' => 'mco', 'MCO08G277' => 'mco', 'MCO13G507' => 'mco', 'MD01G1008900' => 'mdo', 'MD03G1221700' => 'mdo', 'MD05G1323300' => 'mdo', 'MD05G1326400' => 'mdo', 'MD10G1301100' => 'mdo', 'MD10G1304400' => 'mdo', 'MD10G1304500' => 'mdo', 'MD11G1239100' => 'mdo', 'Medtr2g011680' => 'mtr', 'Medtr2g012510' => 'mtr', 'Medtr3g109970' => 'mtr', 'Medtr4g090525' => 'mtr', 'Medtr4g094672' => 'mtr', 'Medtr8g464260' => 'mtr', 'MELO3C002563.2' => 'cme', 'MELO3C007329.2' => 'cme', 'MELO3C008062.2' => 'cme', 'MELO3C018215.2' => 'cme', 'MELO3C030672.2' => 'cme', 'Migut.H00694' => 'egut', 'Migut.H01495' => 'egut', 'Migut.L00670' => 'egut', 'Migut.M00866' => 'egut', 'Migut.M01223' => 'egut', 'MSTRG.14695' => 'ama', 'MSTRG.15941' => 'ama', 'MSTRG.2644' => 'ama', 'MSTRG.6848' => 'ama', 'Nitab4.5_0000496g0090' => 'nta', 'Nitab4.5_0000649g0030' => 'nta', 'Nitab4.5_0000649g0100' => 'nta', 'Nitab4.5_0000662g0040' => 'nta', 'Nitab4.5_0001610g0010' => 'nta', 'Nitab4.5_0001967g0040' => 'nta', 'Nitab4.5_0003114g0090' => 'nta', 'Nitab4.5_0006694g0030' => 'nta', 'Nitab4.5_0006981g0010' => 'nta', 'Nitab4.5_0011268g0010' => 'nta', 'Nitab4.5_0011268g0020' => 'nta', 'Nitab4.5_0021992g0010' => 'nta', 'Nn1g03945' => 'nnu', 'Nn1g06698' => 'nnu', 'Nn1g06802' => 'nnu', 'Nn2g12165' => 'nnu', 'Nn3g16501' => 'nnu', 'Nn3g17606' => 'nnu', 'Nn4g23799' => 'nnu', 'Nn5g28107' => 'nnu', 'Nn5g28512' => 'nnu', 'Nn6g33905' => 'nnu', 'Nn7g37433' => 'nnu', 'Nn8g38977' => 'nnu', 'Oeu004238.1' => 'oeu', 'Oeu008024.1' => 'oeu', 'Oeu028416.1' => 'oeu', 'Oeu031649.1' => 'oeu', 'Oeu038207.1' => 'oeu', 'Oeu053966.2' => 'oeu', 'Oeu055675.1' => 'oeu', 'Oeu058291.1' => 'oeu', 'Os02g0805500' => 'osa', 'Os07g0558200' => 'osa', 'Os07g0558300' => 'osa', 'Os12g0183200' => 'osa', 'Os12g0183300' => 'osa', 'Peaxi162Scf00000g00498' => 'pax', 'Peaxi162Scf00525g00018' => 'pax', 'Peaxi162Scf00779g00210' => 'pax', 'Peaxi162Scf00779g00410' => 'pax', 'Peaxi162Scf00779g00412' => 'pax', 'PGR004G1129' => 'pgr', 'PGR031G3797' => 'pgr', 'PGR042G3840' => 'pgr', 'PGR119G0884' => 'pgr', 'PGSC0003DMG400008568' => 'stu', 'PGSC0003DMG400022370' => 'stu', 'PGSC0003DMG400023321' => 'stu', 'PGSC0003DMG400030007' => 'stu', 'Phvul.002G190600' => 'pvu', 'Phvul.002G223600' => 'pvu', 'Phvul.006G190400' => 'pvu', 'Phvul.006G192800' => 'pvu', 'Phvul.011G148400' => 'pvu', 'Potri.004G033200' => 'ptr', 'Potri.004G036400' => 'ptr', 'Potri.005G063900' => 'ptr', 'Potri.007G105100' => 'ptr', 'Potri.011G044900' => 'ptr', 'Potri.011G124700' => 'ptr', 'Pp3c13_15690' => 'ppa', 'Pp3c14_9660' => 'ppa', 'Pp3c15_5590' => 'ppa', 'Pp3c3_21240' => 'ppa', 'PRCOL_00001073' => 'pco', 'PRCOL_00001956' => 'pco', 'PRCOL_00004535' => 'pco', 'Prupe.4G035200' => 'ppe', 'Prupe.4G039300' => 'ppe', 'Prupe.4G187800' => 'ppe', 'Prupe.4G272000' => 'ppe', 'Psat1g207680' => 'psa', 'Psat1g209040' => 'psa', 'Psat4g173160' => 'psa', 'Psat7g088480' => 'psa', 'Psat7g111200' => 'psa', 'PSO079G0027' => 'pso', 'PSO170G6694' => 'pso', 'PSO423G0128' => 'pso', 'PSO528G0154' => 'pso', 'QL05p038543' => 'qlo', 'QL05p081050' => 'qlo', 'QL05p081056' => 'qlo', 'QL08p019034' => 'qlo', 'QL10p043423' => 'qlo', 'RcHm_v2.0_Chr2g0121661' => 'rch', 'RcHm_v2.0_Chr2g0121711' => 'rch', 'RcHm_v2.0_Chr2g0121731' => 'rch', 'RcHm_v2.0_Chr5g0006041' => 'rch', 'RcHm_v2.0_Chr5g0006821' => 'rch', 'RcHm_v2.0_Chr5g0035001' => 'rch', 'RcHm_v2.0_Chr7g0242171' => 'rch', 'Rhsim04G0018700' => 'rsi', 'Rhsim08G0002400' => 'rsi', 'Rhsim10G0134700' => 'rsi', 'Rhsim13G0175000' => 'rsi', 'Sabra04G0019000' => 'sbr', 'Sabra05G0053200' => 'sbr', 'Sabra11G0031200' => 'sbr', 'Sabra11G0109400' => 'sbr', 'SalBow1G4172' => 'sbo', 'SalBow1G4616' => 'sbo', 'SalBow7G2402' => 'sbo', 'SalBow8G0378' => 'sbo', 'SalBow8G3393' => 'sbo', 'Sc06g0003860' => 'sci', 'Sc06g0010650' => 'sci', 'Sc07g0001800' => 'sci', 'Sed0002135' => 'sed', 'Sed0005361' => 'sed', 'Sed0023425' => 'sed', 'Sed0027927' => 'sed', 'SEGI_00795' => 'sgi', 'SEGI_26343' => 'sgi', 'SEGI_35269' => 'sgi', 'SEGI_37268' => 'sgi', 'SGA_v2.0_scaffold159G37645' => 'sas', 'SGA_v2.0_scaffold370G50110' => 'sas', 'SGA_v2.0_scaffold73G24306' => 'sas', 'SGA_v2.0_scaffold7G03928' => 'sas', 'SHI11462' => 'shi', 'SHI11463' => 'shi', 'SHI30977' => 'shi', 'SHI33254' => 'shi', 'SHI33332' => 'shi', 'SHI34788' => 'shi', 'SHI49793' => 'shi', 'SMO134G0102' => 'smo', 'SMO200G0062' => 'smo', 'Solyc02g078860.3' => 'sly', 'Solyc02g079250.4' => 'sly', 'Solyc02g079270.4' => 'sly', 'Solyc04g016570.1' => 'sly', 'Solyc05g056490.4' => 'sly', 'Solyc12g013560.2' => 'sly', 'Sopen02g023680' => 'spe', 'Sopen02g024070' => 'spe', 'Sopen02g024090' => 'spe', 'Sopen05g034890' => 'spe', 'Sopen12g006920' => 'spe', 'Sp2g27050' => 'spa', 'Sp2g27060' => 'spa', 'Sp2g27070' => 'spa', 'Sp6g03900' => 'spa', 'Sp6g16400' => 'spa', 'TAR381G0336' => 'tar', 'TAR624G0534' => 'tar', 'TAR625G0855' => 'tar', 'TAR626G0779' => 'tar', 'TAR629G1200' => 'tar', 'THA.LOC104800114' => 'tha', 'THA.LOC104806271' => 'tha', 'THA.LOC104811851' => 'tha', 'THA.LOC104813658' => 'tha', 'THA.LOC104818427' => 'tha', 'THA.LOC104819342' => 'tha', 'THA.LOC104824893' => 'tha', 'Thecc.01G134000' => 'tca', 'Thecc.06G196000' => 'tca', 'Thecc.06G201200' => 'tca', 'Thecc.07G074400' => 'tca', 'Thhalv10004312m.g' => 'esa', 'Thhalv10004421m.g' => 'esa', 'Thhalv10004505m.g' => 'esa', 'Thhalv10013845m.g' => 'esa', 'Thhalv10013884m.g' => 'esa', 'Thhalv10028719m.g' => 'esa', 'TPR.G2929' => 'tpr', 'TPR.G29366' => 'tpr', 'TPR.G30449' => 'tpr', 'TPR.G32404' => 'tpr', 'TPR.G36734' => 'tpr', 'TPR.G36821' => 'tpr', 'TWI38G0457' => 'twi', 'TWI38G0548' => 'twi', 'TWI39G1022' => 'twi', 'TWI63G1131' => 'twi', 'TWI79G1082' => 'twi', 'unitig_37.g12335' => 'ugi', 'unitig_899.g14679' => 'ugi', 'vmacro03803' => 'vma', 'vmacro03805' => 'vma', 'vmacro09549' => 'vma', 'vmacro18671' => 'vma', 'vmacro22274' => 'vma', 'vmacro22276' => 'vma', 'VMungo0251G1464' => 'vmu', 'VMungo0251G2364' => 'vmu', 'VMungo0540G0628' => 'vmu', 'VMungo0540G1113' => 'vmu', 'VMungo0540G2005' => 'vmu', 'VMungo1127G0935' => 'vmu', 'Zm00001eb192000' => 'zma', 'Zm00001eb324080' => 'zma', 'Zm00001eb409060' => 'zma', 'Zm00001eb409080' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001100', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001100' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001100', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '556', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001100' ) ), 'genes' => array( 'A02p10330' => 'bna', 'A02p43090' => 'bna', 'A02p43100' => 'bna', 'A03p48690' => 'bna', 'A06p21670' => 'bna', 'A06p30600' => 'bna', 'A06p30610' => 'bna', 'A06p30620' => 'bna', 'A08p33290' => 'bna', 'A09p08500' => 'bna', 'A09p25750' => 'bna', 'A10p11650' => 'bna', 'Aa31LG1G17920' => 'aar', 'Aa31LG3G10330' => 'aar', 'Aa31LG9G9330' => 'aar', 'Aa31LG9G9340' => 'aar', 'Aa31LG9G9350' => 'aar', 'Aa31LG9G9380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3377' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4235' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4236' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1404' => 'aag', 'Actinidia01386' => 'ach', 'Actinidia01923' => 'ach', 'Actinidia05567' => 'ach', 'Actinidia14799' => 'ach', 'Actinidia15936' => 'ach', 'Actinidia18753' => 'ach', 'Actinidia26988' => 'ach', 'Actinidia35270' => 'ach', 'Actinidia37011' => 'ach', 'Actinidia38824' => 'ach', 'Actinidia38866' => 'ach', 'Ah.04g165010' => 'amhyb', 'Ah.14g089050' => 'amhyb', 'AL6G19680' => 'aly', 'AL8G29730' => 'aly', 'AL8G41240' => 'aly', 'AL8G41250' => 'aly', 'AL8G41260' => 'aly', 'Aqoxy1G01118' => 'aox', 'Aqoxy1G02660' => 'aox', 'Aqoxy1G03915' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1HMN83' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IT3ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK4CWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LMP4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IT4TLX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ18QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NC667I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYCR2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4QVWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y92ER0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z42PVZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8HAGL' => 'arhy', 'AT4G05090' => 'ath', 'AT5G09290' => 'ath', 'AT5G54390' => 'ath', 'AT5G63980' => 'ath', 'AT5G63990' => 'ath', 'AT5G64000' => 'ath', 'ATR0584G033' => 'atr', 'ATR0693G145' => 'atr', 'ATR0693G320' => 'atr', 'Atru.chr10.1979' => 'acertr', 'Atru.chr10.2023' => 'acertr', 'Atru.chr2.2814' => 'acertr', 'Atru.chr4.879' => 'acertr', 'AUR62003581' => 'cqu', 'AUR62012491' => 'cqu', 'AUR62014703' => 'cqu', 'AUR62014704' => 'cqu', 'AUR62014747' => 'cqu', 'AUR62015617' => 'cqu', 'AUR62016925' => 'cqu', 'AUR62017891' => 'cqu', 'AUR62017894' => 'cqu', 'AUR62029328' => 'cqu', 'AUR62029340' => 'cqu', 'AUR62043727' => 'cqu', 'BcaB01g01868' => 'bca', 'BcaB03g15312' => 'bca', 'BcaB05g22131' => 'bca', 'BcaB06g28342' => 'bca', 'BcaB07g29712' => 'bca', 'BcaB07g29714' => 'bca', 'BcaB08g35793' => 'bca', 'BcaC01g02653' => 'bca', 'BcaC03g14320' => 'bca', 'BcaC03g18235' => 'bca', 'BcaC03g18236' => 'bca', 'BcaC04g20341' => 'bca', 'BcaC04g21369' => 'bca', 'BolC2t07804H' => 'bol', 'BolC2t12379H' => 'bol', 'BolC2t12380H' => 'bol', 'BolC3t18496H' => 'bol', 'BolC5t34147H' => 'bol', 'BolC9t53874H' => 'bol', 'BolC9t56107H' => 'bol', 'BolC9t57345H' => 'bol', 'BraA02t06100Z' => 'bra', 'BraA06t25256Z' => 'bra', 'BraA06t26012Z' => 'bra', 'BraA09t36499Z' => 'bra', 'BraA09t38144Z' => 'bra', 'BraA10t43260Z' => 'bra', 'C02p17060' => 'bna', 'C02p63060' => 'bna', 'C02p63070' => 'bna', 'C03p62340' => 'bna', 'C03p62350' => 'bna', 'C03p62360' => 'bna', 'C09p09630' => 'bna', 'C09p32620' => 'bna', 'C09p44720' => 'bna', 'CAN.G1156.49' => 'can', 'CAN.G1181.1' => 'can', 'CAN.G424.26' => 'can', 'CAN.G424.28' => 'can', 'CAN.G433.19' => 'can', 'CANSAT01G0170' => 'cansat', 'CANSAT56G1894' => 'cansat', 'CANSAT56G3927' => 'cansat', 'CARHR204120' => 'chi', 'CARHR252470' => 'chi', 'CARHR267670' => 'chi', 'CARHR277900' => 'chi', 'CARHR277910' => 'chi', 'CARHR277920' => 'chi', 'Carub.0006s0784' => 'cru', 'Carub.0006s3305' => 'cru', 'Carub.0008s1472' => 'cru', 'Carub.0008s2476' => 'cru', 'Carub.0008s2477' => 'cru', 'Carub.0008s2478' => 'cru', 'Ca_00249_v3' => 'car', 'Ca_00275_v3' => 'car', 'Ca_18248_v3' => 'car', 'Ca_23097_v3' => 'car', 'Ca_29840_v3' => 'car', 'CBR_g10965' => 'cbr', 'CBR_g427' => 'cbr', 'Cc02_g12340' => 'ccan', 'Cc02_g12650' => 'ccan', 'Cc05_g12560' => 'ccan', 'Cc07_g18630' => 'ccan', 'CDE02G3173' => 'cde', 'CDE04G3754' => 'cde', 'CDE05G2691' => 'cde', 'CDE12G0704' => 'cde', 'Cfa000342' => 'cfa', 'Cfa000374' => 'cfa', 'Cfa001633' => 'cfa', 'Cfa002905' => 'cfa', 'Cfa020527' => 'cfa', 'Ciclev10001463m.g' => 'ccl', 'Ciclev10008644m.g' => 'ccl', 'Ciclev10015112m.g' => 'ccl', 'Ciclev10015399m.g' => 'ccl', 'CiPaw.03G120600' => 'cil', 'CiPaw.09G159900' => 'cil', 'CiPaw.10G117500' => 'cil', 'CiPaw.11G174700' => 'cil', 'ClCG01G015360' => 'cla', 'ClCG01G022470' => 'cla', 'ClCG03G005600' => 'cla', 'ClCG11G018360' => 'cla', 'COL.COLO4_09462' => 'col', 'COL.COLO4_31551' => 'col', 'COL.COLO4_31601' => 'col', 'COL.COLO4_35760' => 'col', 'Cpa.g.sc2554.1' => 'cpa', 'Cpa.g.sc27.102' => 'cpa', 'Cpa.g.sc27.134' => 'cpa', 'Cpa.g.sc42.165' => 'cpa', 'Cre01.g030250' => 'cre', 'Cre12.g501050' => 'cre', 'CsaV3_1G011860' => 'csa', 'CsaV3_3G044460' => 'csa', 'CsaV3_4G008560' => 'csa', 'CsaV3_6G041580' => 'csa', 'CsaV3_6G049640' => 'csa', 'CSS0011776' => 'camsi', 'CSS0015291' => 'camsi', 'CSS0018393' => 'camsi', 'CSS0018704' => 'camsi', 'CSS0027676' => 'camsi', 'DCAR_001208' => 'dca', 'DCAR_008064' => 'dca', 'DCAR_017157' => 'dca', 'DCAR_028145' => 'dca', 'Dinv07109' => 'din', 'Dinv08331' => 'din', 'Dinv18985' => 'din', 'Dinv20761' => 'din', 'Dinv24378' => 'din', 'Dinv24765' => 'din', 'Dinv39795' => 'din', 'Dinv40471' => 'din', 'Dinv40511' => 'din', 'Duzib116G0436' => 'dzi', 'Duzib187G0114' => 'dzi', 'Duzib192G0604' => 'dzi', 'Duzib213G0651' => 'dzi', 'Duzib235G0531' => 'dzi', 'Duzib235G1189' => 'dzi', 'Duzib264G0434' => 'dzi', 'ECA234G0676' => 'eca', 'ECA234G2407' => 'eca', 'ECA236G0140' => 'eca', 'EL10Ac4g08088' => 'bvu', 'EL10Ac8g20544' => 'bvu', 'EL10Ac8g20633' => 'bvu', 'Eucgr.E03818' => 'egr', 'Eucgr.F03343' => 'egr', 'Eucgr.G00577' => 'egr', 'Eucgr.I00195' => 'egr', 'FAN11G0341' => 'fan', 'FAN11G0383' => 'fan', 'FAN11G2753' => 'fan', 'FAN16G0535' => 'fan', 'FAN16G1788' => 'fan', 'FAN16G2544' => 'fan', 'FAN19G1763' => 'fan', 'FAN21G0538' => 'fan', 'FAN21G0587' => 'fan', 'FAN21G3488' => 'fan', 'FAN23G1447' => 'fan', 'FAN23G1742' => 'fan', 'FAN23G2296' => 'fan', 'FAN25G0315' => 'fan', 'FAN25G1363' => 'fan', 'FAN25G3062' => 'fan', 'FAN26G0081' => 'fan', 'FAN28G0182' => 'fan', 'FvH4_1g24470' => 'fve', 'FvH4_3g03790' => 'fve', 'FvH4_3g04430' => 'fve', 'FvH4_3g20770' => 'fve', 'Glyma.05G132200' => 'gma', 'Glyma.06G249500' => 'gma', 'Glyma.07G191500' => 'gma', 'Glyma.08G086800' => 'gma', 'Glyma.12G148400' => 'gma', 'Glyma.13G185200' => 'gma', 'Glyma.13G244900' => 'gma', 'Glyma.13G247100' => 'gma', 'Glyma.15G066900' => 'gma', 'Glyma.15G068800' => 'gma', 'Gohir.A01G067300' => 'ghi', 'Gohir.A04G103533' => 'ghi', 'Gohir.A04G103566' => 'ghi', 'Gohir.A05G166200' => 'ghi', 'Gohir.A05G256500' => 'ghi', 'Gohir.A06G123800' => 'ghi', 'Gohir.A09G004400' => 'ghi', 'Gohir.A09G019900' => 'ghi', 'Gohir.A10G021800' => 'ghi', 'Gohir.A10G022200' => 'ghi', 'Gohir.A10G156800' => 'ghi', 'Gohir.D01G054500' => 'ghi', 'Gohir.D05G169200' => 'ghi', 'Gohir.D06G128700' => 'ghi', 'Gohir.D09G003900' => 'ghi', 'Gohir.D09G019500' => 'ghi', 'Gohir.D10G022600' => 'ghi', 'Gohir.D10G023000' => 'ghi', 'Gohir.D10G108800' => 'ghi', 'Gorai.002G074400' => 'gra', 'Gorai.006G005300' => 'gra', 'Gorai.006G022900' => 'gra', 'Gorai.009G174400' => 'gra', 'Gorai.010G150200' => 'gra', 'Gorai.011G023700' => 'gra', 'Gorai.011G024100' => 'gra', 'Gorai.011G119100' => 'gra', 'GSVIVG01003661001' => 'vvi', 'GSVIVG01005836001' => 'vvi', 'GSVIVG01014412001' => 'vvi', 'GSVIVG01026471001' => 'vvi', 'HanXRQChr09g0259741' => 'han', 'HanXRQChr15g0494501' => 'han', 'HanXRQChr16g0517931' => 'han', 'HanXRQChr17g0552591' => 'han', 'Haze_06551' => 'cav', 'Haze_06589' => 'cav', 'Haze_25258' => 'cav', 'Hma1.2p1_0144F.1_g065020' => 'hma', 'Hma1.2p1_0539F.1_g174620' => 'hma', 'HPP92_005670' => 'vpl', 'HPP92_013157' => 'vpl', 'Hund04427' => 'sun', 'Hund23599' => 'sun', 'Hund27429' => 'sun', 'Hund27430' => 'sun', 'Lalb_Chr01g0006451' => 'lal', 'Lalb_Chr05g0218251' => 'lal', 'Lalb_Chr07g0188391' => 'lal', 'Lalb_Chr15g0090021' => 'lal', 'Lalb_Chr19g0134381' => 'lal', 'Lalb_Chr20g0122331' => 'lal', 'Lj1A1211T72' => 'lonja', 'Lj1A1214T67' => 'lonja', 'Lj1A851G60' => 'lonja', 'Lj2A282T44' => 'lonja', 'Lj3g0001024' => 'lja', 'Lj4A836G51' => 'lonja', 'Lj4C836T4' => 'lonja', 'Lj4g0003458' => 'lja', 'Lj4g0016822' => 'lja', 'Lj4g0024750' => 'lja', 'Lj6g0001591' => 'lja', 'Lj6g0007265' => 'lja', 'Lsat_1_v5_gn_4_137741' => 'lsa', 'Lsat_1_v5_gn_4_56081' => 'lsa', 'Lsat_1_v5_gn_4_56421' => 'lsa', 'Lsat_1_v5_gn_7_106201' => 'lsa', 'Manes.03G115100' => 'mes', 'Manes.12G156600' => 'mes', 'Manes.16G022600' => 'mes', 'Manes.17G033700' => 'mes', 'Mapoly0030s0063' => 'mpo', 'Mapoly0031s0113' => 'mpo', 'Mapoly0068s0099' => 'mpo', 'MBI02_g39535_MAGBIO' => 'mbi', 'MBI06_g27446_MAGBIO' => 'mbi', 'MBI18_g26906_MAGBIO' => 'mbi', 'MCO07G303' => 'mco', 'MCO08G277' => 'mco', 'MCO13G507' => 'mco', 'MD01G1008900' => 'mdo', 'MD03G1221700' => 'mdo', 'MD05G1323300' => 'mdo', 'MD05G1326400' => 'mdo', 'MD10G1301100' => 'mdo', 'MD10G1304400' => 'mdo', 'MD10G1304500' => 'mdo', 'MD11G1239100' => 'mdo', 'Medtr2g011680' => 'mtr', 'Medtr2g012510' => 'mtr', 'Medtr3g109970' => 'mtr', 'Medtr4g090525' => 'mtr', 'Medtr4g094672' => 'mtr', 'Medtr8g464260' => 'mtr', 'MELO3C002563.2' => 'cme', 'MELO3C007329.2' => 'cme', 'MELO3C008062.2' => 'cme', 'MELO3C018215.2' => 'cme', 'MELO3C030672.2' => 'cme', 'Migut.H00694' => 'egut', 'Migut.H01495' => 'egut', 'Migut.L00670' => 'egut', 'Migut.M00866' => 'egut', 'Migut.M01223' => 'egut', 'MSTRG.14695' => 'ama', 'MSTRG.15941' => 'ama', 'MSTRG.2644' => 'ama', 'MSTRG.6848' => 'ama', 'Nitab4.5_0000496g0090' => 'nta', 'Nitab4.5_0000649g0030' => 'nta', 'Nitab4.5_0000649g0100' => 'nta', 'Nitab4.5_0000662g0040' => 'nta', 'Nitab4.5_0001610g0010' => 'nta', 'Nitab4.5_0001967g0040' => 'nta', 'Nitab4.5_0003114g0090' => 'nta', 'Nitab4.5_0006694g0030' => 'nta', 'Nitab4.5_0006981g0010' => 'nta', 'Nitab4.5_0011268g0010' => 'nta', 'Nitab4.5_0011268g0020' => 'nta', 'Nitab4.5_0021992g0010' => 'nta', 'Nn1g03945' => 'nnu', 'Nn1g06698' => 'nnu', 'Nn1g06802' => 'nnu', 'Nn2g12165' => 'nnu', 'Nn3g16501' => 'nnu', 'Nn3g17606' => 'nnu', 'Nn4g23799' => 'nnu', 'Nn5g28107' => 'nnu', 'Nn5g28512' => 'nnu', 'Nn6g33905' => 'nnu', 'Nn7g37433' => 'nnu', 'Nn8g38977' => 'nnu', 'Oeu004238.1' => 'oeu', 'Oeu008024.1' => 'oeu', 'Oeu028416.1' => 'oeu', 'Oeu031649.1' => 'oeu', 'Oeu038207.1' => 'oeu', 'Oeu053966.2' => 'oeu', 'Oeu055675.1' => 'oeu', 'Oeu058291.1' => 'oeu', 'Os02g0805500' => 'osa', 'Os07g0558200' => 'osa', 'Os07g0558300' => 'osa', 'Os12g0183200' => 'osa', 'Os12g0183300' => 'osa', 'Peaxi162Scf00000g00498' => 'pax', 'Peaxi162Scf00525g00018' => 'pax', 'Peaxi162Scf00779g00210' => 'pax', 'Peaxi162Scf00779g00410' => 'pax', 'Peaxi162Scf00779g00412' => 'pax', 'PGR004G1129' => 'pgr', 'PGR031G3797' => 'pgr', 'PGR042G3840' => 'pgr', 'PGR119G0884' => 'pgr', 'PGSC0003DMG400008568' => 'stu', 'PGSC0003DMG400022370' => 'stu', 'PGSC0003DMG400023321' => 'stu', 'PGSC0003DMG400030007' => 'stu', 'Phvul.002G190600' => 'pvu', 'Phvul.002G223600' => 'pvu', 'Phvul.006G190400' => 'pvu', 'Phvul.006G192800' => 'pvu', 'Phvul.011G148400' => 'pvu', 'Potri.004G033200' => 'ptr', 'Potri.004G036400' => 'ptr', 'Potri.005G063900' => 'ptr', 'Potri.007G105100' => 'ptr', 'Potri.011G044900' => 'ptr', 'Potri.011G124700' => 'ptr', 'Pp3c13_15690' => 'ppa', 'Pp3c14_9660' => 'ppa', 'Pp3c15_5590' => 'ppa', 'Pp3c3_21240' => 'ppa', 'PRCOL_00001073' => 'pco', 'PRCOL_00001956' => 'pco', 'PRCOL_00004535' => 'pco', 'Prupe.4G035200' => 'ppe', 'Prupe.4G039300' => 'ppe', 'Prupe.4G187800' => 'ppe', 'Prupe.4G272000' => 'ppe', 'Psat1g207680' => 'psa', 'Psat1g209040' => 'psa', 'Psat4g173160' => 'psa', 'Psat7g088480' => 'psa', 'Psat7g111200' => 'psa', 'PSO079G0027' => 'pso', 'PSO170G6694' => 'pso', 'PSO423G0128' => 'pso', 'PSO528G0154' => 'pso', 'QL05p038543' => 'qlo', 'QL05p081050' => 'qlo', 'QL05p081056' => 'qlo', 'QL08p019034' => 'qlo', 'QL10p043423' => 'qlo', 'RcHm_v2.0_Chr2g0121661' => 'rch', 'RcHm_v2.0_Chr2g0121711' => 'rch', 'RcHm_v2.0_Chr2g0121731' => 'rch', 'RcHm_v2.0_Chr5g0006041' => 'rch', 'RcHm_v2.0_Chr5g0006821' => 'rch', 'RcHm_v2.0_Chr5g0035001' => 'rch', 'RcHm_v2.0_Chr7g0242171' => 'rch', 'Rhsim04G0018700' => 'rsi', 'Rhsim08G0002400' => 'rsi', 'Rhsim10G0134700' => 'rsi', 'Rhsim13G0175000' => 'rsi', 'Sabra04G0019000' => 'sbr', 'Sabra05G0053200' => 'sbr', 'Sabra11G0031200' => 'sbr', 'Sabra11G0109400' => 'sbr', 'SalBow1G4172' => 'sbo', 'SalBow1G4616' => 'sbo', 'SalBow7G2402' => 'sbo', 'SalBow8G0378' => 'sbo', 'SalBow8G3393' => 'sbo', 'Sc06g0003860' => 'sci', 'Sc06g0010650' => 'sci', 'Sc07g0001800' => 'sci', 'Sed0002135' => 'sed', 'Sed0005361' => 'sed', 'Sed0023425' => 'sed', 'Sed0027927' => 'sed', 'SEGI_00795' => 'sgi', 'SEGI_26343' => 'sgi', 'SEGI_35269' => 'sgi', 'SEGI_37268' => 'sgi', 'SGA_v2.0_scaffold159G37645' => 'sas', 'SGA_v2.0_scaffold370G50110' => 'sas', 'SGA_v2.0_scaffold73G24306' => 'sas', 'SGA_v2.0_scaffold7G03928' => 'sas', 'SHI11462' => 'shi', 'SHI11463' => 'shi', 'SHI30977' => 'shi', 'SHI33254' => 'shi', 'SHI33332' => 'shi', 'SHI34788' => 'shi', 'SHI49793' => 'shi', 'SMO134G0102' => 'smo', 'SMO200G0062' => 'smo', 'Solyc02g078860.3' => 'sly', 'Solyc02g079250.4' => 'sly', 'Solyc02g079270.4' => 'sly', 'Solyc04g016570.1' => 'sly', 'Solyc05g056490.4' => 'sly', 'Solyc12g013560.2' => 'sly', 'Sopen02g023680' => 'spe', 'Sopen02g024070' => 'spe', 'Sopen02g024090' => 'spe', 'Sopen05g034890' => 'spe', 'Sopen12g006920' => 'spe', 'Sp2g27050' => 'spa', 'Sp2g27060' => 'spa', 'Sp2g27070' => 'spa', 'Sp6g03900' => 'spa', 'Sp6g16400' => 'spa', 'TAR381G0336' => 'tar', 'TAR624G0534' => 'tar', 'TAR625G0855' => 'tar', 'TAR626G0779' => 'tar', 'TAR629G1200' => 'tar', 'THA.LOC104800114' => 'tha', 'THA.LOC104806271' => 'tha', 'THA.LOC104811851' => 'tha', 'THA.LOC104813658' => 'tha', 'THA.LOC104818427' => 'tha', 'THA.LOC104819342' => 'tha', 'THA.LOC104824893' => 'tha', 'Thecc.01G134000' => 'tca', 'Thecc.06G196000' => 'tca', 'Thecc.06G201200' => 'tca', 'Thecc.07G074400' => 'tca', 'Thhalv10004312m.g' => 'esa', 'Thhalv10004421m.g' => 'esa', 'Thhalv10004505m.g' => 'esa', 'Thhalv10013845m.g' => 'esa', 'Thhalv10013884m.g' => 'esa', 'Thhalv10028719m.g' => 'esa', 'TPR.G2929' => 'tpr', 'TPR.G29366' => 'tpr', 'TPR.G30449' => 'tpr', 'TPR.G32404' => 'tpr', 'TPR.G36734' => 'tpr', 'TPR.G36821' => 'tpr', 'TWI38G0457' => 'twi', 'TWI38G0548' => 'twi', 'TWI39G1022' => 'twi', 'TWI63G1131' => 'twi', 'TWI79G1082' => 'twi', 'unitig_37.g12335' => 'ugi', 'unitig_899.g14679' => 'ugi', 'vmacro03803' => 'vma', 'vmacro03805' => 'vma', 'vmacro09549' => 'vma', 'vmacro18671' => 'vma', 'vmacro22274' => 'vma', 'vmacro22276' => 'vma', 'VMungo0251G1464' => 'vmu', 'VMungo0251G2364' => 'vmu', 'VMungo0540G0628' => 'vmu', 'VMungo0540G1113' => 'vmu', 'VMungo0540G2005' => 'vmu', 'VMungo1127G0935' => 'vmu', 'Zm00001eb192000' => 'zma', 'Zm00001eb324080' => 'zma', 'Zm00001eb409060' => 'zma', 'Zm00001eb409080' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001100' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001100' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001100' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001100' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151