Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30433 Trifolium pratense HOM05D007347 ORTHO05D009296 4.6e-125 452.6 588 100.0
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 1.1e-97 361.7 578 84.4
Medtr8g039270 Medicago truncatula HOM05D007347 ORTHO05D009296 7.0e-97 359.0 586 87.7
Glyma.15G236300 Glycine max HOM05D007347 ORTHO05D009296 3.0e-76 290.4 588 77.9
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 1.5e-75 288.1 589 75.9
Phvul.011G207300 Phaseolus vulgaris HOM05D007347 ORTHO05D009296 3.4e-67 260.4 588 82.3
Glyma.13G197700 Glycine max HOM05D007347 ORTHO05D009296 1.4e-65 255.0 181 67.4
VMungo1127G1072 Vigna mungo HOM05D007347 ORTHO05D009296 7.0e-65 252.7 588 81.5
Lalb_Chr19g0132391 Lupinus albus HOM05D007347 ORTHO05D009296 2.7e-64 250.8 181 66.9
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 1.1e-60 238.8 183 62.3
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 4.1e-57 226.9 181 60.8
CiPaw.03G007800 Carya illinoinensis HOM05D007347 ORTHO05D009296 1.2e-56 225.3 182 58.8
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 2.3e-55 221.1 180 59.4
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 1.5e-54 218.4 181 60.2
CSS0000287 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 1.9e-54 218.0 172 62.2
CSS0049471 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 1.9e-54 218.0 172 62.2
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 2.5e-54 217.6 180 58.9
Cfa007995 Carpinus fangiana HOM05D007347 ORTHO05D009296 1.8e-52 211.5 165 62.4
Ca_23964_v3 Cicer arietinum L. HOM05D007347 ORTHO05D009296 5.2e-52 209.9 489 92.4
MELO3C026797.2 Cucumis melo HOM05D007347 ORTHO05D009296 1.2e-51 208.8 174 56.9
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 1.2e-51 208.8 181 58.0
Haze_14081 Corylus avellana HOM05D007347 ORTHO05D009296 2.0e-51 208.0 175 59.4
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.6e-51 207.6 180 56.7
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.6e-51 207.6 180 56.7
Ciclev10011342m.g Citrus clementina HOM05D007347 ORTHO05D009296 4.4e-51 206.8 182 56.0
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 7.6e-51 206.1 180 56.1
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 9.9e-51 205.7 174 56.3
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 9.9e-51 205.7 180 56.1
Cc07_g04830 Coffea canephora HOM05D007347 ORTHO05D009296 3.7e-50 203.8 180 56.1
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 3.7e-50 203.8 180 56.1
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 6.4e-50 203.0 174 55.7
Sopen04g021380 Solanum pennellii HOM05D007347 ORTHO05D009296 6.4e-50 203.0 181 53.0
Duzib138G0808 Durio zibethinus HOM05D007347 ORTHO05D009296 1.1e-49 202.2 173 57.8
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 1.1e-49 202.2 179 58.1
Solyc04g050550.3 Solanum lycopersicum HOM05D007347 ORTHO05D009296 1.9e-49 201.4 174 54.6
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 2.4e-49 201.1 181 56.9
Nitab4.5_0007154g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 2.4e-49 201.1 174 54.6
Gorai.005G232200 Gossypium raimondii HOM05D007347 ORTHO05D009296 4.1e-49 200.3 173 58.4
Peaxi162Scf00004g02628 Petunia axillaris HOM05D007347 ORTHO05D009296 4.1e-49 200.3 174 54.0
Gohir.D02G204900 Gossypium hirsutum HOM05D007347 ORTHO05D009296 7.1e-49 199.5 173 58.4
Hma1.2p1_1364F.1_g278380 Hydrangea macrophylla HOM05D007347 ORTHO05D009296 7.1e-49 199.5 172 59.3
MSTRG.24902 Avicennia marina HOM05D007347 ORTHO05D009296 1.2e-48 198.7 176 55.7
Sed0006376 Sechium edule HOM05D007347 ORTHO05D009296 4.6e-48 196.8 174 54.6
CAN.G71.18 Capsicum annuum HOM05D007347 ORTHO05D009296 1.0e-47 195.7 181 51.4
Thecc.04G145700 Theobroma cacao HOM05D007347 ORTHO05D009296 1.3e-47 195.3 173 56.6
TWI15G0869 Tripterygium wilfordii HOM05D007347 ORTHO05D009296 1.3e-47 195.3 182 55.5
CANSAT64G0714 Cannabis sativa HOM05D007347 ORTHO05D009296 2.3e-47 194.5 174 56.3
Gohir.A03G183300 Gossypium hirsutum HOM05D007347 ORTHO05D009296 3.0e-47 194.1 173 57.2
SGA_v2.0_scaffold204G41666 Striga asiatica HOM05D007347 ORTHO05D009296 5.1e-47 193.4 174 55.2
Cpa.g.sc16.131 Carica papaya HOM05D007347 ORTHO05D009296 6.6e-47 193.0 171 54.4
Potri.017G108600 Populus trichocarpa HOM05D007347 ORTHO05D009296 4.3e-46 190.3 177 53.7
HanXRQChr14g0448021 Helianthus annuus HOM05D007347 ORTHO05D009296 9.6e-46 189.1 174 56.3
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 1.2e-45 188.7 174 53.4
Eucgr.I02100 Eucalyptus grandis HOM05D007347 ORTHO05D009296 1.6e-45 188.3 171 53.8
Migut.H00560 Erythranthe guttata HOM05D007347 ORTHO05D009296 6.2e-45 186.4 171 54.4
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 8.1e-45 186.0 181 48.6
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 8.1e-45 186.0 181 48.6
PSO782G5207 Papaver somniferum HOM05D007347 ORTHO05D009296 1.4e-44 185.3 173 50.3
GSVIVG01036486001 Vitis vinifera HOM05D007347 ORTHO05D009296 1.8e-44 184.9 160 57.5
SalBow1G8225 Salvia bowleyana HOM05D007347 ORTHO05D009296 2.0e-43 181.4 171 51.5
BraA04t16830Z Brassica rapa HOM05D007347 ORTHO05D009296 5.8e-43 179.9 171 51.5
MBI03_g44527_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 5.8e-43 179.9 173 48.6
Aqoxy3G04330 Aquilegia oxysepala HOM05D007347 ORTHO05D009296 7.6e-43 179.5 168 52.4
AL7G51690 Arabidopsis lyrata HOM05D007347 ORTHO05D009296 9.9e-43 179.1 174 54.0
Manes.18G103700 Manihot esculenta HOM05D007347 ORTHO05D009296 1.3e-42 178.7 160 53.1
BcaC02g09666 Brassica carinata HOM05D007347 ORTHO05D009296 2.2e-42 177.9 171 50.3
C04p45350 Brassica napus HOM05D007347 ORTHO05D009296 2.2e-42 177.9 171 50.3
BolC4t26117H Brassica oleracea HOM05D007347 ORTHO05D009296 2.2e-42 177.9 171 50.3
A04p11620 Brassica napus HOM05D007347 ORTHO05D009296 2.9e-42 177.6 171 50.9
Sabra17G0091200 Salix brachista HOM05D007347 ORTHO05D009296 2.9e-42 177.6 174 51.1
BcaB06g27240 Brassica carinata HOM05D007347 ORTHO05D009296 1.1e-41 175.6 171 50.3
THA.LOC104805542 Tarenaya hassleriana HOM05D007347 ORTHO05D009296 1.9e-41 174.9 175 53.7
AT5G38730 Arabidopsis thaliana HOM05D007347 ORTHO05D009296 3.2e-41 174.1 174 54.0
Carub.0007s3713 Capsella rubella HOM05D007347 ORTHO05D009296 7.1e-41 172.9 174 52.3
Thhalv10028323m.g Eutrema salsugineum HOM05D007347 ORTHO05D009296 7.1e-41 172.9 174 50.6
SpUn0124_0020 Schrenkiella parvula HOM05D007347 ORTHO05D009296 1.2e-40 172.2 174 51.7
SpUn0185_0030 Schrenkiella parvula HOM05D007347 ORTHO05D009296 1.2e-40 172.2 174 51.7
AUR62019500 Chenopodium quinoa HOM05D007347 ORTHO05D009296 2.7e-40 171.0 171 48.5
Nn3g18549 Nelumbo nucifera HOM05D007347 ORTHO05D009296 7.8e-40 169.5 170 47.6
Aa31LG9G16920 Aethionema arabicum HOM05D007347 ORTHO05D009296 1.7e-39 168.3 166 52.4
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 1.1e-38 165.6 171 48.0
FAN28G0832 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.5e-38 164.5 184 47.3
Sc10g0001490 Simmondsia chinensis HOM05D007347 ORTHO05D009296 2.5e-38 164.5 181 45.9
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 1.7e-34 151.8 172 43.0
SHI25538 Sapria himalayana HOM05D002460 ORTHO05D002716 7.1e-33 146.4 167 46.1
Manes.02G063016 Manihot esculenta HOM05D002460 ORTHO05D002716 9.3e-33 146.0 154 49.4
Atru.chr10.1870 Acer truncatum HOM05D007347 ORTHO05D009296 2.5e-30 137.9 181 40.3
COL.COLO4_23655 Corchorus olitorius HOM05D007347 ORTHO05D009296 5.3e-28 130.2 102 62.7
ECA238G4434 Erigeron canadensis HOM05D007347 ORTHO05D009296 2.9e-26 124.4 102 60.8
AUR62036136 Chenopodium quinoa HOM05D007347 ORTHO05D009296 2.1e-24 118.2 102 55.9
MBI03_g13436_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 1.8e-23 115.2 98 54.1
COL.COLO4_37044 Corchorus olitorius HOM05D007347 ORTHO05D009296 1.0e-15 89.4 69 55.1
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 1.1e-09 69.3 62 48.4
MBI03_g44528_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 4.2e-09 67.4 69 44.9
Oeu033427.1 Olea europaea HOM05D007347 ORTHO05D009296 3.5e-08 64.3 68 44.1
DCAR_010986 Daucus carota HOM05D007347 ORTHO05D009296 6.1e-08 63.5 70 41.4
CDE05G1387 Ceratophyllum demersum HOM05D007347 ORTHO05D009296 3.9e-07 60.8 46 52.2
SGA_v2.0_scaffold4G02364 Striga asiatica HOM05D007347 ORTHO05D009296 3.9e-07 60.8 62 45.2
Zm00001eb259350 Zea mays HOM05D007347 ORTHO05D009296 1.5e-06 58.9 155 33.5
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 3.3e-06 57.8 172 25.0


User provided reference genes

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