Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 4.1e-119 431.4 217 100.0
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 5.9e-110 401.0 217 93.5
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 3.8e-109 398.3 217 94.0
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 6.5e-109 397.5 217 93.1
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 3.0e-106 388.7 218 93.1
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.4e-103 379.8 217 88.0
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 5.4e-103 377.9 217 87.6
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 3.5e-102 375.2 217 88.9
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 5.9e-102 374.4 217 88.0
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.3e-101 373.2 217 88.9
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.7e-101 372.9 217 88.9
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 3.6e-99 365.2 217 86.2
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.8e-98 362.8 216 86.1
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.3e-96 356.7 216 81.9
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.7e-96 356.3 221 83.3
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.8e-96 355.5 216 81.5
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 3.7e-96 355.1 219 84.0
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 83.6
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 4.1e-95 351.7 221 82.8
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 5.4e-95 351.3 221 81.9
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 82.7
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 5.4e-95 351.3 218 83.9
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 7.0e-95 350.9 218 83.0
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 7.0e-95 350.9 218 83.9
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 7.0e-95 350.9 222 82.4
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 7.0e-95 350.9 221 81.4
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 1.2e-94 350.1 221 82.8
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.6e-94 349.7 220 82.7
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 81.3
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 3.5e-94 348.6 221 82.8
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 4.5e-94 348.2 221 82.4
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 5.9e-94 347.8 219 81.7
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 7.7e-94 347.4 220 82.3
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 7.7e-94 347.4 220 82.3
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 1.0e-93 347.1 216 80.1
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.0e-93 347.1 219 81.3
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.0e-93 347.1 220 82.7
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.0e-93 347.1 221 82.4
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 1.3e-93 346.7 220 80.0
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 80.5
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 80.5
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 80.5
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 80.5
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 2.3e-93 345.9 217 80.6
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.9e-93 345.5 219 82.6
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 2.9e-93 345.5 221 79.6
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 3.8e-93 345.1 220 80.9
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 3.8e-93 345.1 220 80.9
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 6.6e-93 344.4 220 80.9
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 6.6e-93 344.4 218 79.8
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 6.6e-93 344.4 232 78.0
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 6.6e-93 344.4 218 80.7
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 6.6e-93 344.4 220 81.4
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 6.6e-93 344.4 221 80.5
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 8.6e-93 344.0 217 82.0
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 80.0
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.5e-92 343.2 221 81.4
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.5e-92 343.2 222 79.3
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 79.8
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 79.8
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 1.9e-92 342.8 221 80.5
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 2.5e-92 342.4 219 79.0
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 3.3e-92 342.0 219 79.5
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 3.3e-92 342.0 219 79.0
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 3.3e-92 342.0 218 79.4
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 3.3e-92 342.0 218 79.4
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 4.3e-92 341.7 218 78.9
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 5.6e-92 341.3 218 78.4
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 5.6e-92 341.3 221 81.0
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 5.6e-92 341.3 219 79.0
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 5.6e-92 341.3 220 79.1
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.3e-92 340.9 221 80.5
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 9.5e-92 340.5 220 78.2
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 9.5e-92 340.5 221 80.5
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 9.5e-92 340.5 219 79.5
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 9.5e-92 340.5 224 78.6
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.2e-91 340.1 220 78.2
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 1.2e-91 340.1 218 78.9
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.2e-91 340.1 219 78.5
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 1.6e-91 339.7 218 79.8
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 2.1e-91 339.3 220 78.6
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 2.8e-91 339.0 218 78.9
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 2.8e-91 339.0 219 79.5
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 2.8e-91 339.0 221 80.1
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 3.6e-91 338.6 221 80.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 4.7e-91 338.2 216 80.6
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 8.0e-91 337.4 221 79.6
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 8.0e-91 337.4 221 79.6
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 8.0e-91 337.4 220 78.2
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 8.0e-91 337.4 217 79.3
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 8.0e-91 337.4 223 78.5
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.0e-90 337.0 223 78.5
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.4e-90 336.7 220 77.7
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.8e-90 336.3 217 79.3
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.0e-90 335.5 221 79.2
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.0e-90 335.5 217 78.3
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 4.0e-90 335.1 218 78.4
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 4.0e-90 335.1 216 78.7
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 4.0e-90 335.1 216 79.2
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 4.0e-90 335.1 218 78.4
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 5.2e-90 334.7 219 79.0
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 6.8e-90 334.3 221 78.3
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 6.8e-90 334.3 220 79.1
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.2e-89 333.6 218 77.5
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.5e-89 333.2 219 77.6
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 2.0e-89 332.8 219 77.2
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.6e-89 332.4 216 80.6
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 4.4e-89 331.6 217 79.7
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 5.7e-89 331.3 219 75.8
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.7e-88 329.7 217 77.0
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.7e-88 329.7 217 76.5
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.2e-88 329.3 218 75.7
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 6.4e-88 327.8 223 78.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 8.3e-88 327.4 219 76.3
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 8.3e-88 327.4 219 76.7
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.4e-87 326.6 218 76.6
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 4.1e-87 325.1 213 77.5
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 5.4e-87 324.7 216 76.9
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 6.6e-85 317.8 215 76.3
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 3.3e-84 315.5 222 74.8
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 2.3e-82 309.3 215 73.0
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 7.5e-81 304.3 220 70.5
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 4.9e-80 301.6 217 70.5
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 7.0e-79 297.7 165 87.3
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 8.1e-75 284.3 163 84.0
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.4e-74 283.5 191 74.3
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.4e-73 278.9 165 83.0
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 1.9e-71 273.1 208 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 2.4e-71 272.7 169 78.7
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.0e-69 267.3 222 63.1
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.0e-69 265.8 174 75.9
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.9e-69 265.4 189 70.9
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 1.4e-58 230.3 190 63.7
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 3.1e-58 229.2 219 60.3
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.4e-55 219.5 221 57.5
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.2e-48 196.4 219 55.7
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.9e-47 193.4 191 54.5
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 1.2e-46 190.7 186 55.9
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 1.9e-44 183.3 127 73.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 9.6e-44 181.0 150 58.0
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 8.1e-43 177.9 136 72.8
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 9.0e-26 121.3 109 66.1
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-15 87.8 59 72.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.1e-15 87.8 59 72.9
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 7.2e-07 58.5 98 40.8


User provided reference genes

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