Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29961 Trifolium pratense HOM05D004367 ORTHO05D004937 2.0e-53 212.2 111 100.0
Medtr2g079330 Medicago truncatula HOM05D004367 ORTHO05D004937 4.3e-24 114.8 81 76.5
TPR.G38993 Trifolium pratense HOM05D004367 ORTHO05D004937 7.4e-24 114.0 81 79.0
VMungo1080G0845 Vigna mungo HOM05D004367 ORTHO05D004937 2.8e-23 112.1 81 75.3
Psat5g242760 Pisum sativum HOM05D004367 ORTHO05D004937 4.8e-23 111.3 81 75.3
Ca_01836_v3 Cicer arietinum L. HOM05D004367 ORTHO05D004937 1.4e-22 109.8 81 74.1
Lj3g0015758 Lotus japonicus HOM05D004367 ORTHO05D004937 3.1e-22 108.6 81 72.8
arahy.Tifrunner.gnm1.ann1.6ZWE2K Arachis hypogaea HOM05D004367 ORTHO05D004937 4.0e-22 108.2 81 70.4
arahy.Tifrunner.gnm1.ann1.SV3A8G Arachis hypogaea HOM05D004367 ORTHO05D004937 4.0e-22 108.2 81 70.4
Glyma.13G277700 Glycine max HOM05D004367 ORTHO05D004937 5.3e-22 107.8 81 70.4
Lalb_Chr25g0286441 Lupinus albus HOM05D004367 ORTHO05D004937 9.0e-22 107.1 81 70.4
Phvul.005G070800 Phaseolus vulgaris HOM05D004367 ORTHO05D004937 2.0e-21 105.9 81 71.6
Carub.0008s1407 Capsella rubella HOM05D004367 ORTHO05D004937 1.9e-19 99.4 74 71.6
Potri.001G400800 Populus trichocarpa HOM05D004367 ORTHO05D004937 2.5e-19 99.0 74 70.3
ClCG11G018120 Citrullus lanatus HOM05D004367 ORTHO05D004937 3.2e-19 98.6 105 54.3
MELO3C016705.2 Cucumis melo HOM05D004367 ORTHO05D004937 4.2e-19 98.2 81 64.2
CsaV3_4G033760 Cucumis sativus L. HOM05D004367 ORTHO05D004937 4.2e-19 98.2 81 64.2
Sp6g15840 Schrenkiella parvula HOM05D004367 ORTHO05D004937 7.1e-19 97.4 74 68.9
Gohir.D01G051200 Gossypium hirsutum HOM05D004367 ORTHO05D004937 1.2e-18 96.7 73 71.2
Gorai.002G071000 Gossypium raimondii HOM05D004367 ORTHO05D004937 1.2e-18 96.7 73 71.2
Sabra16G0262900 Salix brachista HOM05D004367 ORTHO05D004937 1.2e-18 96.7 74 71.6
BcaC04g20419 Brassica carinata HOM05D004367 ORTHO05D004937 1.6e-18 96.3 74 67.6
A10p11150 Brassica napus HOM05D004367 ORTHO05D004937 1.6e-18 96.3 74 67.6
C09p43730 Brassica napus HOM05D004367 ORTHO05D004937 1.6e-18 96.3 74 67.6
BolC9t57258H Brassica oleracea HOM05D004367 ORTHO05D004937 1.6e-18 96.3 74 67.6
BraA10t43208Z Brassica rapa HOM05D004367 ORTHO05D004937 1.6e-18 96.3 74 67.6
Duzib213G0391 Durio zibethinus HOM05D004367 ORTHO05D004937 1.6e-18 96.3 73 69.9
Thecc.07G087300 Theobroma cacao HOM05D004367 ORTHO05D004937 1.6e-18 96.3 73 68.5
BcaB05g22072 Brassica carinata HOM05D004367 ORTHO05D004937 2.1e-18 95.9 74 67.6
Cpa.g.sc80.55 Carica papaya HOM05D004367 ORTHO05D004937 2.1e-18 95.9 74 68.9
THA.LOC104799923 Tarenaya hassleriana HOM05D004367 ORTHO05D004937 2.1e-18 95.9 74 66.2
TWI38G0759 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 2.1e-18 95.9 86 59.3
TWI39G0928 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 2.7e-18 95.5 74 68.9
CiPaw.11G168700 Carya illinoinensis HOM05D004367 ORTHO05D004937 3.5e-18 95.1 81 64.2
Hma1.2p1_0480F.1_g161800 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 3.5e-18 95.1 74 67.6
Hma1.2p1_0480F.1_g161810 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 3.5e-18 95.1 74 67.6
Hma1.2p1_2210F.1_g317160 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 3.5e-18 95.1 74 67.6
BcaB08g35738 Brassica carinata HOM05D004367 ORTHO05D004937 4.6e-18 94.7 74 66.2
Aa31LG3G10140 Aethionema arabicum HOM05D004367 ORTHO05D004937 6.0e-18 94.4 74 62.2
AL8G28710 Arabidopsis lyrata HOM05D004367 ORTHO05D004937 6.0e-18 94.4 74 66.2
AT5G53770 Arabidopsis thaliana HOM05D004367 ORTHO05D004937 6.0e-18 94.4 74 66.2
Gohir.A01G064120 Gossypium hirsutum HOM05D004367 ORTHO05D004937 6.0e-18 94.4 73 69.9
Nn1g06556 Nelumbo nucifera HOM05D004367 ORTHO05D004937 7.9e-18 94.0 74 68.9
Ciclev10008024m.g Citrus clementina HOM05D004367 ORTHO05D004937 1.0e-17 93.6 73 68.5
ECA234G0664 Erigeron canadensis HOM05D004367 ORTHO05D004937 1.0e-17 93.6 103 49.5
Eucgr.F01119 Eucalyptus grandis HOM05D004367 ORTHO05D004937 1.0e-17 93.6 74 66.2
SalBow8G3529 Salvia bowleyana HOM05D004367 ORTHO05D004937 1.0e-17 93.6 103 53.4
Dinv20169 Davidia involucrata HOM05D000397 ORTHO05D004937 1.3e-17 93.2 74 67.6
SGA_v2.0_scaffold73G24268 Striga asiatica HOM05D004367 ORTHO05D004937 1.3e-17 93.2 74 67.6
Atru.chr2.2651 Acer truncatum HOM05D004367 ORTHO05D004937 1.8e-17 92.8 73 67.1
Atru.chr2.2673 Acer truncatum HOM05D004367 ORTHO05D004937 1.8e-17 92.8 73 67.1
Actinidia12812 Actinidia chinensis HOM05D004367 ORTHO05D004937 1.8e-17 92.8 74 67.6
MSTRG.15226 Avicennia marina HOM05D004367 ORTHO05D004937 1.8e-17 92.8 73 67.1
Dinv04310 Davidia involucrata HOM05D004367 ORTHO05D004937 1.8e-17 92.8 74 67.6
Migut.M00812 Erythranthe guttata HOM05D004367 ORTHO05D004937 1.8e-17 92.8 73 68.5
Lj1A844G36 Lonicera japonica HOM05D004367 ORTHO05D004937 1.8e-17 92.8 74 67.6
MBI07_g32654_MAGBIO Magnolia biondii HOM05D004367 ORTHO05D004937 1.8e-17 92.8 74 67.6
Oeu060551.2 Olea europaea HOM05D004367 ORTHO05D004937 1.8e-17 92.8 81 61.7
Sed0004687 Sechium edule HOM05D004367 ORTHO05D004937 1.8e-17 92.8 99 53.5
Solyc10g006990.3 Solanum lycopersicum HOM05D004367 ORTHO05D004937 2.3e-17 92.4 73 67.1
Sopen10g002900 Solanum pennellii HOM05D004367 ORTHO05D004937 2.3e-17 92.4 73 67.1
PGSC0003DMG400025036 Solanum tuberosum HOM05D004367 ORTHO05D004937 2.3e-17 92.4 73 67.1
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 2.3e-17 92.4 74 66.2
CSS0040030 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 3.0e-17 92.0 74 66.2
CSS0040505 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 3.0e-17 92.0 74 66.2
Cfa020594 Carpinus fangiana HOM05D004367 ORTHO05D004937 3.0e-17 92.0 81 61.7
Manes.03G110700 Manihot esculenta HOM05D004367 ORTHO05D004937 3.0e-17 92.0 74 64.9
Nitab4.5_0000207g0150 Nicotiana tabacum HOM05D004367 ORTHO05D004937 3.0e-17 92.0 73 65.8
Nitab4.5_0002383g0110 Nicotiana tabacum HOM05D004367 ORTHO05D004937 3.0e-17 92.0 73 65.8
QL08p021548 Quercus lobata HOM05D004367 ORTHO05D004937 3.0e-17 92.0 81 63.0
GSVIVG01014349001 Vitis vinifera HOM05D004367 ORTHO05D004937 3.0e-17 92.0 74 66.2
Cc05_g12110 Coffea canephora HOM05D004367 ORTHO05D004937 3.9e-17 91.7 73 68.5
Rhsim06G0197900 Rhododendron simsii HOM05D004367 ORTHO05D004937 3.9e-17 91.7 74 64.9
Prupe.4G182900 Prunus persica HOM05D004367 ORTHO05D004937 5.1e-17 91.3 81 59.3
HPP92_007964 Vanilla planifolia HOM05D004367 ORTHO05D004937 5.1e-17 91.3 101 52.5
HPP92_008014 Vanilla planifolia HOM05D004367 ORTHO05D004937 5.1e-17 91.3 101 52.5
TAR624G0790 Trochodendron aralioides HOM05D004367 ORTHO05D004937 6.7e-17 90.9 74 67.6
ATR0730G126 Amborella trichopoda HOM05D004367 ORTHO05D004937 8.7e-17 90.5 74 63.5
Lsat_1_v5_gn_5_127821 Lactuca sativa HOM05D004367 ORTHO05D004937 8.7e-17 90.5 74 63.5
Oeu005412.1 Olea europaea HOM05D004367 ORTHO05D004937 8.7e-17 90.5 74 63.5
MD03G1226500 Malus domestica HOM05D004367 ORTHO05D004937 1.1e-16 90.1 81 59.3
Zm00001eb157140 Zea mays HOM05D004367 ORTHO05D004937 1.1e-16 90.1 109 45.0
EL10Ac4g08166 Beta vulgaris HOM05D004367 ORTHO05D004937 1.9e-16 89.4 74 63.5
PSO210G1788 Papaver somniferum HOM05D004367 ORTHO05D004937 1.9e-16 89.4 74 63.5
Ciclev10008854m.g Citrus clementina HOM05D004367 ORTHO05D004937 2.5e-16 89.0 73 64.4
Peaxi162Scf00027g02615 Petunia axillaris HOM05D004367 ORTHO05D004937 2.5e-16 89.0 73 64.4
SGA_v2.0_scaffold34G13821 Striga asiatica HOM05D004367 ORTHO05D004937 2.5e-16 89.0 74 63.5
DCAR_017144 Daucus carota HOM05D004367 ORTHO05D004937 3.3e-16 88.6 74 62.2
PGR083G2352 Punica granatum HOM05D004367 ORTHO05D004937 3.3e-16 88.6 74 64.9
Sc16g0006960 Simmondsia chinensis HOM05D004367 ORTHO05D004937 3.3e-16 88.6 74 63.5
HanXRQChr12g0361521 Helianthus annuus HOM05D004367 ORTHO05D004937 4.3e-16 88.2 74 59.5
Aqoxy4G00819 Aquilegia oxysepala HOM05D004367 ORTHO05D004937 5.7e-16 87.8 74 63.5
AUR62029381 Chenopodium quinoa HOM05D004367 ORTHO05D004937 5.7e-16 87.8 70 65.7
Hund22921 Selenicereus undatus HOM05D004367 ORTHO05D004937 5.7e-16 87.8 81 56.8
FvH4_3g20190 Fragaria vesca HOM05D004367 ORTHO05D004937 7.4e-16 87.4 109 47.7
FAN16G0302 Fragaria x ananassa HOM05D004367 ORTHO05D004937 7.4e-16 87.4 109 47.7
FAN21G3330 Fragaria x ananassa HOM05D004367 ORTHO05D004937 7.4e-16 87.4 109 47.7
FAN25G3266 Fragaria x ananassa HOM05D004367 ORTHO05D004937 7.4e-16 87.4 109 47.7
Ah.06g184060 Amaranthus hybridus HOM05D004367 ORTHO05D004937 9.7e-16 87.0 74 62.2
Gohir.A05G179700 Gossypium hirsutum HOM05D004367 ORTHO05D004937 9.7e-16 87.0 73 67.1
CDE10G0244 Ceratophyllum demersum HOM05D004367 ORTHO05D004937 3.7e-15 85.1 74 60.8
RcHm_v2.0_Chr5g0034001 Rosa chinensis HOM05D004367 ORTHO05D004937 4.8e-15 84.7 109 45.9
unitig_899.g15291 Utricularia gibba HOM05D004367 ORTHO05D004937 1.8e-14 82.8 74 60.8
SEGI_40468 Sequoiadendron giganteum HOM05D004367 ORTHO05D004937 5.3e-14 81.3 75 57.3
AagrBONN_evm.TU.Sc2ySwM_362.745 Anthoceros agrestis HOM05D004367 ORTHO05D004937 9.0e-14 80.5 100 45.0
Thhalv10013073m.g Eutrema salsugineum HOM05D004367 ORTHO05D004937 2.6e-13 79.0 74 58.1
Mapoly0006s0037 Marchantia polymorpha HOM05D004367 ORTHO05D004937 3.4e-13 78.6 74 54.1
vmacro11860 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 3.4e-13 78.6 102 48.0
CBR_g262 Chara braunii HOM05D004367 ORTHO05D004937 7.6e-13 77.4 74 55.4
SMO356G0731 Selaginella moellendorffii HOM05D004367 ORTHO05D004937 2.2e-12 75.9 74 58.1
Pp3c24_20390 Physcomitrium patens HOM05D004367 ORTHO05D004937 2.9e-12 75.5 74 54.1
Cre17.g720750 Chlamydomonas reinhardtii HOM05D004367 ORTHO05D004937 1.9e-11 72.8 72 50.0
COL.COLO4_09395 Corchorus olitorius HOM05D004367 ORTHO05D004937 1.2e-10 70.1 54 70.4
CARHR266920 Cardamine hirsuta HOM05D004367 ORTHO05D004937 2.7e-10 68.9 54 66.7
PRCOL_00005020 Prasinoderma coloniale HOM05D004367 ORTHO05D004937 3.6e-10 68.6 74 45.9
Gohir.A08G145700 Gossypium hirsutum HOM05D004367 ORTHO05D004937 1.4e-09 66.6 54 68.5
vmacro22868 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 1.8e-09 66.2 94 45.7
MCO11G842 Micromonas commoda HOM05D004367 ORTHO05D004937 2.3e-09 65.9 73 47.9
TPR.G29966 Trifolium pratense HOM05D004367 ORTHO05D004937 1.1e-08 63.5 55 70.9
arahy.Tifrunner.gnm1.ann1.9F49MR Arachis hypogaea HOM05D002009 ORTHO05D004937 1.9e-08 62.8 52 67.3
AUR62034287 Chenopodium quinoa HOM05D004367 ORTHO05D004937 2.5e-08 62.4 54 59.3
TPR.G18089 Trifolium pratense HOM05D004367 ORTHO05D004937 3.7e-07 58.5 70 57.1
CSS0022374 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 6.9e-06 54.3 55 52.7
CSS0038230 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 6.9e-06 54.3 55 52.7


User provided reference genes

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