Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 0.0e+00 3187.5 1681 100.0
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 0.0e+00 2535.4 1703 78.7
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 0.0e+00 2415.2 1696 75.2
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 0.0e+00 2399.4 1728 73.9
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 0.0e+00 2235.3 1644 72.3
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 2026.1 1690 64.9
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 2019.6 1719 63.8
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 1995.3 1718 63.3
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 0.0e+00 1989.5 1730 63.3
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1874.8 1703 60.5
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1860.9 1703 60.4
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 0.0e+00 1770.0 1724 56.7
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 1766.1 1731 56.8
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 0.0e+00 1726.5 1737 55.8
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 0.0e+00 1713.7 1742 55.2
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 0.0e+00 1700.3 1738 54.4
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 0.0e+00 1698.3 1735 54.2
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 0.0e+00 1691.4 1722 54.6
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1675.6 1739 54.5
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 0.0e+00 1667.1 1734 53.6
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1661.4 1733 53.6
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 0.0e+00 1637.1 1726 52.9
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 0.0e+00 1630.2 1717 53.5
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 0.0e+00 1619.8 1729 52.9
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 0.0e+00 1618.2 1729 52.9
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 0.0e+00 1614.0 1724 52.1
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 0.0e+00 1613.6 1704 52.8
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 0.0e+00 1613.2 1729 52.2
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 0.0e+00 1611.7 1732 52.7
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1609.7 1784 51.5
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 1607.8 1734 52.5
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 1606.3 1740 53.1
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1604.0 1709 53.6
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 0.0e+00 1600.1 1737 51.8
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 0.0e+00 1593.2 1737 51.9
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 0.0e+00 1590.9 1726 51.7
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 0.0e+00 1588.2 1740 51.6
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 0.0e+00 1577.4 1734 51.4
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 0.0e+00 1576.6 1729 51.8
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 1569.3 1901 48.6
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1561.6 1727 51.4
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 0.0e+00 1560.8 1733 50.4
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 0.0e+00 1559.3 1758 51.1
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 0.0e+00 1559.3 1736 52.1
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 0.0e+00 1557.3 1237 67.0
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1551.2 1727 51.4
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 0.0e+00 1542.3 1737 51.4
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 0.0e+00 1535.8 1728 51.3
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 0.0e+00 1531.9 1737 49.3
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 0.0e+00 1531.9 1834 48.9
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1521.9 1735 50.6
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 0.0e+00 1515.4 1760 49.1
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 0.0e+00 1510.0 1563 53.7
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 0.0e+00 1504.2 1681 51.6
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 0.0e+00 1501.1 1725 49.0
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1496.1 1735 49.9
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 0.0e+00 1495.7 1735 49.9
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 0.0e+00 1494.9 1723 49.9
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 0.0e+00 1491.9 1743 48.3
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1485.3 1735 49.6
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 0.0e+00 1480.3 1708 49.5
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 0.0e+00 1477.2 1732 48.9
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1471.8 1748 49.1
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 0.0e+00 1466.8 1355 59.6
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 1460.7 1691 49.7
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 0.0e+00 1450.3 1754 48.7
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 0.0e+00 1437.9 1509 53.5
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 0.0e+00 1436.4 1749 47.5
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 0.0e+00 1423.3 1507 53.1
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 0.0e+00 1409.0 1730 48.7
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 0.0e+00 1401.0 1647 50.2
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 0.0e+00 1398.6 1717 47.9
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 0.0e+00 1389.0 1722 47.4
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 0.0e+00 1386.7 1740 47.2
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 0.0e+00 1382.9 1722 47.5
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 0.0e+00 1381.3 1727 47.3
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 0.0e+00 1378.6 1728 47.6
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 0.0e+00 1376.3 1724 47.4
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 0.0e+00 1374.8 1727 47.5
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 0.0e+00 1372.5 1723 47.9
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1365.5 1720 47.5
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1362.8 1719 47.2
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 0.0e+00 1361.7 1190 60.7
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1350.9 1187 60.4
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 0.0e+00 1348.6 1461 52.2
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 0.0e+00 1342.8 1202 59.3
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 0.0e+00 1337.4 1228 58.1
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 0.0e+00 1307.0 1051 66.9
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 0.0e+00 1291.9 1715 44.7
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 0.0e+00 1284.2 1610 47.7
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 0.0e+00 1255.4 1078 60.7
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 0.0e+00 1224.5 1499 48.0
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 0.0e+00 1185.6 1145 55.7
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 0.0e+00 1182.9 1788 43.0
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 0.0e+00 1157.5 1238 51.3
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 0.0e+00 1142.1 1759 41.2
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 0.0e+00 1134.8 1166 55.9
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 0.0e+00 1129.0 1752 41.2
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 0.0e+00 1125.9 1765 40.5
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 0.0e+00 1124.8 1177 53.2
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 0.0e+00 1120.1 1429 46.0
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.5e-293 1013.1 1505 41.5
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 3.8e-273 946.0 907 58.2
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 9.1e-251 871.7 690 68.0
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 1.8e-230 804.3 1766 33.1
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 2.3e-222 777.3 1146 41.8
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 6.0e-218 762.7 1464 35.5
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 2.4e-214 750.7 1214 41.8
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 1.1e-211 741.9 1106 42.6
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 2.0e-189 667.9 541 62.3
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 4.4e-152 543.9 808 44.1
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 5.3e-150 537.0 705 46.2
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 1.1e-139 502.7 408 67.2
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 8.8e-137 493.0 382 68.3
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 6.3e-135 486.9 758 41.4
GSVIVG01012486001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.2e-128 466.1 1019 37.4
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 3.0e-100 371.7 312 62.2
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 1.1e-89 336.7 228 72.8
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 3.4e-80 305.1 275 56.0
Sp5g22060 Schrenkiella parvula HOM05D002270 ORTHO05D002866 4.5e-80 304.7 404 46.8
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 1.3e-79 303.1 400 46.0
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 4.6e-77 294.7 425 41.6
Cpa.g.sc30.11 Carica papaya HOM05D002270 ORTHO05D002866 1.3e-76 293.1 259 56.8
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 6.9e-73 280.8 417 42.0
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 9.0e-73 280.4 603 35.0
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 5.8e-72 277.7 415 41.7
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 3.2e-70 271.9 423 38.5
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 4.2e-70 271.6 504 35.1
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 2.3e-68 265.8 736 32.5
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 1.5e-67 263.1 367 45.2
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.6e-66 259.6 861 29.3
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 7.2e-62 244.2 310 45.2
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 2.2e-58 232.6 216 56.9
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 2.2e-58 232.6 932 25.0
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 9.1e-57 227.3 410 35.6
Nn8g39133 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.9e-54 219.5 236 57.2
Nn8g39147 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.9e-54 219.5 236 57.2
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 2.0e-51 209.5 564 30.3
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 4.1e-49 201.8 567 30.5
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 2.0e-48 199.5 581 29.9
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 5.0e-47 194.9 572 28.7
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 1.9e-46 193.0 323 36.5
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 4.7e-45 188.3 470 30.4
vmacro22218 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 4.7e-45 188.3 147 64.6
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 3.3e-43 182.2 570 26.5
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 6.3e-42 177.9 122 72.1
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 1.2e-40 173.7 605 25.5
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 2.6e-40 172.6 414 32.9
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 7.7e-40 171.0 147 62.6
Psat3g019920 Pisum sativum HOM05D002270 ORTHO05D002866 3.8e-39 168.7 119 73.9
Cpa.g.sc30.17 Carica papaya HOM05D002270 ORTHO05D002866 3.6e-37 162.2 173 49.1
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 4.7e-37 161.8 266 36.5
QL93p0107_0362 Quercus lobata HOM05D002270 ORTHO05D002866 3.1e-33 149.1 146 53.4
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 9.1e-33 147.5 573 25.7
C02p22530 Brassica napus HOM05D002270 ORTHO05D002866 2.7e-32 146.0 110 64.5
BolC2t08407H Brassica oleracea HOM05D002270 ORTHO05D002866 2.7e-32 146.0 110 64.5
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 6.5e-31 141.4 280 34.3
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 7.2e-30 137.9 127 62.2
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 1.6e-29 136.7 418 29.4
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 2.3e-28 132.9 188 45.7
C02p22550 Brassica napus HOM05D002270 ORTHO05D002866 8.8e-28 131.0 147 50.3
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 6.3e-26 124.8 154 45.5
C05p38670 Brassica napus HOM05D002270 ORTHO05D002866 3.1e-25 122.5 160 43.8
AagrBONN_evm.TU.Sc2ySwM_117.1507 Anthoceros agrestis HOM05D002270 ORTHO05D002866 3.5e-24 119.0 205 39.0
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 2.5e-22 112.8 191 36.6
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 2.1e-21 109.8 84 64.3
Nitab4.5_0000433g0210 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.1e-21 109.8 78 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 4.1e-17 95.5 110 44.5
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 5.9e-16 91.7 53 88.7
Psat0s3488g0040 Pisum sativum HOM05D002270 ORTHO05D030496 1.0e-15 90.9 53 88.7
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.6e-13 83.6 212 31.1
SHI16815 Sapria himalayana HOM05D002270 ORTHO05D002866 6.1e-13 81.6 178 33.1
SEGI_39038 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 6.1e-13 81.6 150 30.0
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 3.7e-10 72.4 371 23.2
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 4.9e-10 72.0 392 23.7
arahy.Tifrunner.gnm1.ann1.X0CJR3 Arachis hypogaea HOM05D000682 ORTHO05D000510 6.4e-10 71.6 54 72.2
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 1.3e-07 63.9 321 24.6
SEGI_19104 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 5.0e-07 62.0 133 27.1
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 5.6e-06 58.5 133 27.8
MBI19_g33168_MAGBIO Magnolia biondii HOM05D022050 ORTHO05D025786 9.5e-06 57.8 61 49.2


User provided reference genes

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