Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 0.0e+00 1270.8 655 100.0
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 4.9e-176 622.1 336 93.5
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 3.9e-173 612.5 336 90.5
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 9.3e-167 591.3 336 88.1
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 6.3e-147 525.4 332 78.9
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 3.9e-141 506.1 330 76.4
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 1.0e-136 491.5 333 75.1
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 2.2e-136 490.3 327 75.5
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.2e-136 490.3 315 77.5
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 9.4e-135 485.0 327 75.5
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 1.6e-134 484.2 315 76.8
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 9.7e-132 474.9 345 70.1
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 2.8e-131 473.4 323 74.9
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 3.5e-129 466.5 332 71.1
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.4e-125 454.5 336 68.2
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 7.5e-124 448.7 345 66.7
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 3.1e-122 443.4 337 67.4
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 4.1e-122 443.0 340 67.9
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 9.1e-122 441.8 336 68.5
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 2.7e-121 440.3 328 66.8
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 2.9e-120 436.8 339 66.1
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 2.9e-120 436.8 339 66.1
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.8e-120 436.4 333 65.8
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 5.0e-120 436.0 344 65.7
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 6.5e-120 435.6 333 65.2
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 8.5e-120 435.3 342 64.6
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 8.5e-120 435.3 333 66.1
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 1.9e-119 434.1 329 66.6
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 3.2e-119 433.3 334 65.0
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 5.5e-119 432.6 333 64.9
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 1.2e-118 431.4 344 64.5
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.2e-118 431.4 339 65.2
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.6e-118 431.0 336 64.6
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 2.1e-118 430.6 329 66.6
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 4.7e-118 429.5 334 66.5
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 8.0e-118 428.7 333 65.8
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.0e-117 428.3 341 64.2
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.4e-117 427.9 315 66.7
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.3e-117 427.2 334 64.4
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 3.0e-117 426.8 342 65.8
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 4.0e-117 426.4 329 65.7
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 6.8e-117 425.6 337 65.0
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 1.2e-116 424.9 341 61.9
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 3.4e-116 423.3 334 65.3
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 5.7e-116 422.5 328 65.2
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 9.8e-116 421.8 334 63.5
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.7e-115 421.0 335 63.9
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.1e-114 418.3 333 65.5
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.8e-114 417.5 334 63.2
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.8e-114 417.5 331 65.0
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 7.0e-114 415.6 314 65.3
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.5e-113 412.9 333 64.3
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.9e-113 412.5 333 64.3
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.7e-112 411.0 340 63.5
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 2.2e-112 410.6 340 63.8
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 3.8e-112 409.8 334 64.4
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 6.5e-112 409.1 328 61.9
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 6.5e-112 409.1 340 60.6
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 6.5e-112 409.1 322 63.4
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.1e-111 408.3 338 62.7
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.1e-111 408.3 339 62.8
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.5e-111 407.9 333 64.0
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.9e-111 407.5 346 62.4
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 1.9e-111 407.5 344 61.9
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.5e-111 407.1 345 61.2
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.2e-111 406.8 333 63.7
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 4.2e-111 406.4 342 62.6
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 5.5e-111 406.0 338 62.1
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 5.5e-111 406.0 340 62.4
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.5e-111 406.0 326 64.4
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 5.5e-111 406.0 334 61.1
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 7.2e-111 405.6 333 61.6
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 9.5e-111 405.2 344 61.6
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 1.2e-110 404.8 322 63.0
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 1.6e-110 404.4 338 61.8
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 2.1e-110 404.1 340 62.6
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 2.1e-110 404.1 347 60.8
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 2.1e-110 404.1 340 61.8
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 3.6e-110 403.3 333 63.4
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 6.1e-110 402.5 328 61.9
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.0e-109 401.7 340 61.5
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 1.0e-109 401.7 328 61.6
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 1.4e-109 401.4 340 61.5
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.8e-109 401.0 339 60.5
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 2.3e-109 400.6 345 61.2
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 3.0e-109 400.2 323 61.9
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 4.0e-109 399.8 320 61.9
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 6.8e-109 399.1 333 62.5
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 4.4e-108 396.4 340 60.9
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 4.4e-108 396.4 336 63.4
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.7e-107 394.4 325 60.9
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.8e-107 393.7 339 59.6
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.9e-107 392.9 328 62.5
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 4.9e-107 392.9 327 61.2
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 1.4e-106 391.3 335 60.0
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 3.1e-106 390.2 327 57.5
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 3.1e-106 390.2 327 57.5
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 2.7e-105 387.1 369 56.6
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 1.7e-104 384.4 315 58.1
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 8.0e-102 375.6 345 55.9
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.3e-101 374.0 340 56.5
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 7.5e-100 369.0 337 57.9
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 1.3e-99 368.2 341 57.2
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 6.4e-99 365.9 334 58.1
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 4.1e-98 363.2 340 58.5
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 7.0e-98 362.5 258 67.1
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 7.8e-97 359.0 283 61.5
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 2.3e-93 347.4 317 54.3
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.4e-92 343.2 319 57.7
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 3.5e-81 307.0 337 45.1
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 7.8e-81 305.8 367 43.3
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.5e-79 300.8 252 61.1
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 9.5e-79 298.9 326 50.3
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 7.1e-66 256.1 347 38.9
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 2.0e-60 238.0 220 52.7
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 9.9e-60 235.7 251 51.0
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 4.9e-59 233.4 308 41.9
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.8e-53 214.9 185 62.2
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 9.0e-53 212.6 185 61.6
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 9.3e-50 202.6 149 65.1
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.6e-49 201.8 284 39.1
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 1.6e-49 201.8 158 63.9
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 7.9e-49 199.5 177 58.2
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 3.0e-40 171.0 136 64.0
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.4e-37 162.2 131 62.6
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 3.2e-34 151.0 103 69.9
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 5.5e-34 150.2 127 59.1
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 9.3e-34 149.4 99 71.7
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 9.3e-34 149.4 103 68.9
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 2.1e-33 148.3 133 61.7
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 2.7e-33 147.9 105 66.7
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 4.6e-33 147.1 100 71.0
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.1e-31 142.5 271 31.7
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 7.4e-31 139.8 128 60.9
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.3e-30 139.0 116 58.6
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 6.3e-30 136.7 216 38.4
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.4e-29 135.6 93 69.9
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 2.6e-28 131.3 168 42.3
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 4.5e-28 130.6 108 62.0
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.3e-27 129.0 117 58.1
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.1e-26 125.9 117 57.3
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 7.2e-26 123.2 95 62.1
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 7.2e-26 123.2 95 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 1.0e-24 119.4 156 42.9
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 3.0e-24 117.9 164 36.6
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 2.0e-23 115.2 171 43.9
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 2.2e-22 111.7 100 58.0
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 4.7e-17 94.0 139 43.9
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 9.1e-13 79.7 121 47.9
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 2.5e-10 71.6 100 48.0
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 1.6e-09 68.9 46 71.7
TPR.G40204 Trifolium pratense HOM05D020578 ORTHO05D410848 5.2e-08 63.9 65 49.2
TPR.G18505 Trifolium pratense HOM05D000003 ORTHO05D000004 8.8e-08 63.2 170 30.6
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.4e-07 60.8 57 54.4
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 9.7e-07 59.7 49 57.1


User provided reference genes

Program Settings