Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 3.1e-136 488.4 236 100.0
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 9.3e-117 423.7 235 87.7
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.5e-114 416.4 229 86.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 4.8e-113 411.4 234 82.9
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 3.2e-109 398.7 235 81.3
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.2e-108 396.7 228 82.0
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 5.4e-101 371.3 228 76.8
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 9.3e-101 370.5 228 76.8
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 3.9e-99 365.2 236 72.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 9.3e-93 344.0 227 71.4
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.6e-92 343.2 226 71.7
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.3e-91 340.1 226 71.2
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 2.3e-91 339.3 229 69.9
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.0e-91 339.0 226 70.4
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 8.7e-91 337.4 227 70.0
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.1e-90 337.0 226 69.5
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.9e-90 336.3 227 69.6
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 3.3e-90 335.5 227 69.2
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 4.3e-90 335.1 232 67.2
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.5e-87 326.6 227 68.3
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 3.4e-87 325.5 227 68.7
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 5.8e-87 324.7 227 68.3
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 7.6e-87 324.3 227 68.7
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.8e-86 322.0 225 68.9
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.4e-85 320.1 227 67.0
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.0e-83 313.9 226 65.5
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.9e-83 312.0 226 65.5
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.7e-83 311.2 227 65.6
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 8.7e-83 310.8 220 65.0
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.9e-82 309.7 225 66.7
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 3.3e-82 308.9 228 65.8
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 3.3e-82 308.9 227 65.2
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 7.4e-82 307.8 225 65.3
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.7e-82 307.4 230 65.2
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.3e-81 307.0 228 67.1
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.8e-81 305.8 228 65.8
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 3.7e-81 305.4 227 63.9
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.7e-81 305.4 228 65.8
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.7e-81 305.4 228 65.4
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 6.3e-81 304.7 227 63.9
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 6.3e-81 304.7 224 65.6
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-80 303.5 227 62.6
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.4e-80 303.5 227 64.8
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.8e-80 303.1 227 62.6
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 5.3e-80 301.6 226 63.3
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 9.0e-80 300.8 227 63.4
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 9.0e-80 300.8 234 60.3
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.2e-79 300.4 229 64.6
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.6e-79 299.3 226 63.7
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 3.4e-79 298.9 225 66.2
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 7.7e-79 297.7 227 65.6
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.3e-78 297.0 227 65.2
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 2.2e-78 296.2 225 65.3
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.4e-77 293.5 226 61.5
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 5.5e-77 291.6 224 62.9
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.6e-76 290.0 226 62.4
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.6e-76 290.0 226 61.1
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 2.7e-76 289.3 227 62.6
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 1.0e-75 287.3 227 60.8
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.0e-75 287.3 225 63.1
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.8e-75 286.6 226 59.7
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 1.8e-75 286.6 227 58.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.0e-75 285.8 227 59.5
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 8.8e-75 284.3 225 63.1
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.5e-74 282.7 225 62.2
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.5e-74 282.7 228 62.7
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 3.3e-74 282.3 227 62.6
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.7e-73 280.0 231 58.9
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 4.8e-73 278.5 229 58.5
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 5.3e-72 275.0 226 58.8
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 4.5e-71 271.9 230 57.4
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 5.9e-71 271.6 226 58.4
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 5.9e-71 271.6 226 57.5
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.0e-70 270.8 230 56.5
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.3e-70 270.4 226 57.5
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.3e-70 270.4 226 56.2
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.9e-70 269.2 226 57.5
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.9e-70 269.2 208 65.4
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 3.8e-70 268.9 230 56.1
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.1e-69 267.3 225 56.9
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 2.5e-69 266.2 230 55.2
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.2e-69 265.8 204 62.3
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.2e-69 265.8 207 61.4
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 9.4e-69 264.2 230 55.2
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-68 262.7 195 62.1
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 4.7e-68 261.9 227 55.1
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 5.1e-67 258.5 226 55.8
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 2.6e-66 256.1 228 56.6
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 9.7e-66 254.2 219 55.7
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.1e-64 250.8 223 54.3
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 3.1e-64 249.2 222 58.1
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.3e-62 243.8 229 52.8
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 2.2e-62 243.0 226 53.1
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-60 237.3 217 53.0
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 3.6e-60 235.7 222 56.3
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.4e-59 233.8 228 52.6
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.3e-57 227.3 247 48.6
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 4.5e-55 218.8 225 50.7
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 5.0e-54 215.3 218 52.8
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.6e-52 210.3 237 48.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.4e-51 207.2 236 47.5
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 2.8e-49 199.5 229 46.7
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 2.0e-47 193.4 237 42.2
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 7.7e-47 191.4 144 63.2
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.7e-46 190.3 227 43.6
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.2e-46 189.9 249 42.6
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.5e-45 187.2 249 43.8
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.5e-45 187.2 243 43.2
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.9e-45 186.8 234 42.7
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.7e-44 183.0 235 43.0
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.0e-43 181.0 225 42.7
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 8.8e-43 177.9 151 58.3
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 8.8e-43 177.9 226 43.8
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.5e-42 177.2 234 38.0
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.6e-42 176.4 260 39.6
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.4e-42 176.0 232 43.5
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.2e-41 173.3 227 46.3
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.8e-40 170.2 260 37.7
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 3.1e-40 169.5 233 39.1
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 5.4e-40 168.7 175 47.4
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 5.4e-40 168.7 175 47.4
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 7.0e-40 168.3 234 40.6
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.2e-39 167.5 259 37.8
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.0e-39 166.8 237 38.4
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.5e-39 166.0 260 37.3
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.5e-39 166.0 226 43.8
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 6.6e-38 161.8 239 35.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.9e-37 160.2 260 38.1
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.2e-35 152.1 227 42.3
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 2.0e-34 150.2 164 43.3
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.4e-34 149.4 252 35.7
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 7.5e-34 148.3 215 39.1
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.2e-33 146.7 227 41.4
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 4.9e-33 145.6 189 43.4
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 1.4e-32 144.1 208 38.0
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 1.4e-32 144.1 126 54.8
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 2.4e-32 143.3 353 30.0
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 9.2e-32 141.4 139 50.4
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 7.8e-31 138.3 159 43.4
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.7e-30 137.1 311 30.2
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.9e-30 136.0 320 29.7
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 8.6e-30 134.8 224 38.4
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.1e-29 134.4 236 33.5
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 1.1e-29 134.4 136 47.1
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.9e-29 133.7 276 31.2
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 9.5e-29 131.3 213 33.3
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 2.1e-28 130.2 227 33.5
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 8.0e-28 128.3 115 56.5
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 4.0e-27 125.9 246 35.0
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 7.5e-26 121.7 142 44.4
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 4.9e-25 119.0 104 52.9
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.4e-24 116.7 239 31.4
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 3.2e-24 116.3 147 43.5
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 1.6e-23 114.0 146 40.4
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.7e-23 113.2 146 40.4
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.5e-18 97.4 103 43.7
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.5e-18 95.1 76 53.9
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.4e-17 92.0 222 32.4
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.1e-16 91.3 250 31.6
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.1e-16 89.4 158 37.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.7e-14 84.0 150 30.7
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.7e-12 75.9 160 33.1
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.0e-11 72.8 102 41.2
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.5e-10 70.9 83 45.8
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.9e-09 66.6 117 35.0


User provided reference genes

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