Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 0.0e+00 1266.5 640 100.0
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.2e-256 889.8 640 73.6
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 5.6e-249 864.4 661 69.4
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 2.3e-242 842.4 627 69.9
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 3.0e-242 842.0 610 73.3
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 3.4e-230 802.0 631 67.2
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.9e-228 796.2 644 65.8
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 5.8e-222 774.6 629 66.0
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 8.7e-218 760.8 629 65.3
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 2.6e-214 749.2 645 63.7
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 4.3e-209 731.9 636 64.2
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.3e-208 730.3 644 62.6
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 8.1e-200 701.0 712 57.2
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.1e-196 690.6 734 55.3
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 3.2e-196 689.1 747 54.9
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 7.1e-196 688.0 741 55.2
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 4.6e-187 658.7 722 54.6
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 7.2e-172 608.2 642 53.1
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.8e-167 593.6 631 52.8
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 8.5e-165 584.7 643 51.5
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 8.0e-163 578.2 637 52.1
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 8.8e-162 574.7 640 51.4
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 7.4e-161 571.6 639 50.2
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 3.7e-160 569.3 639 51.0
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 4.8e-160 568.9 639 49.5
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.4e-159 567.4 656 51.5
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 1.2e-158 564.3 635 50.6
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.2e-158 564.3 630 51.0
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 2.0e-158 563.5 648 50.2
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 3.5e-158 562.8 654 50.6
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 7.7e-158 561.6 654 50.5
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.7e-157 560.5 630 50.5
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 1.5e-156 557.4 633 49.9
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 3.2e-156 556.2 633 49.4
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 5.2e-154 548.9 658 49.1
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 8.3e-152 541.6 602 51.0
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 1.8e-151 540.4 619 50.1
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 5.4e-151 538.9 634 49.5
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 3.5e-150 536.2 626 49.5
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 7.7e-150 535.0 627 50.7
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.3e-149 534.3 641 48.7
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 2.9e-149 533.1 634 47.8
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 8.5e-149 531.6 531 53.7
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 7.2e-148 528.5 625 48.8
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 7.2e-148 528.5 626 50.0
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 2.7e-147 526.6 625 50.4
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 4.7e-147 525.8 641 47.6
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.4e-146 524.2 554 52.0
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.2e-145 521.2 630 48.3
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 2.0e-145 520.4 612 49.3
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 2.6e-145 520.0 635 46.5
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 4.4e-145 519.2 638 48.7
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 4.4e-145 519.2 549 52.1
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 9.8e-145 518.1 637 46.6
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 8.3e-144 515.0 632 48.7
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 1.6e-142 510.8 651 46.5
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 3.5e-142 509.6 653 46.9
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.0e-141 508.1 620 47.7
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-140 504.6 623 46.5
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 7.2e-140 501.9 658 46.8
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 9.5e-140 501.5 647 44.4
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 6.1e-139 498.8 624 46.8
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 8.0e-139 498.4 625 46.7
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.4e-138 497.7 661 46.0
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 2.3e-138 496.9 537 51.6
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.5e-137 494.2 613 47.3
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 7.5e-137 491.9 643 46.2
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.3e-136 491.1 649 45.3
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.8e-135 487.3 616 47.2
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 5.4e-135 485.7 623 45.1
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 2.0e-134 483.8 638 45.1
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 2.7e-134 483.4 634 45.9
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.0e-133 481.5 631 45.5
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 3.9e-133 479.6 627 45.1
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 5.0e-133 479.2 689 43.4
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 1.9e-132 477.2 627 45.0
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 4.7e-131 472.6 634 46.1
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 6.2e-131 472.2 624 44.9
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.4e-130 471.1 631 44.7
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 4.0e-130 469.5 632 45.3
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 5.2e-130 469.2 620 45.6
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 8.9e-130 468.4 626 44.9
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.2e-129 468.0 626 45.4
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.5e-129 467.6 632 44.0
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 2.0e-129 467.2 628 43.8
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.6e-129 466.8 594 45.6
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 3.4e-129 466.5 626 43.1
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 5.8e-129 465.7 639 44.1
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.7e-128 464.2 612 45.6
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.2e-128 463.8 629 44.0
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 2.9e-128 463.4 633 43.8
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 2.9e-128 463.4 613 45.0
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 3.7e-128 463.0 626 44.9
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.7e-128 463.0 626 45.0
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 1.4e-127 461.1 633 43.6
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 1.4e-127 461.1 540 48.1
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 1.9e-127 460.7 629 44.7
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 4.1e-127 459.5 629 44.5
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 4.1e-127 459.5 627 46.3
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.6e-126 457.6 633 44.9
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.7e-126 456.8 633 43.9
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 4.6e-126 456.1 558 47.7
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.0e-125 453.4 637 44.0
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 3.9e-125 453.0 632 43.4
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 5.0e-125 452.6 629 43.6
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.1e-124 451.4 593 46.5
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 1.5e-124 451.1 627 45.6
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.5e-124 451.1 614 45.8
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.5e-124 451.1 614 45.8
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.5e-124 450.3 645 43.4
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 4.3e-124 449.5 635 43.5
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 2.1e-123 447.2 651 41.9
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 2.8e-123 446.8 524 49.6
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 1.2e-121 441.4 633 43.4
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 1.2e-121 441.4 642 41.7
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 7.5e-121 438.7 443 55.1
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 2.2e-120 437.2 559 46.2
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 4.1e-119 433.0 630 42.7
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.5e-118 429.9 571 45.9
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 1.3e-117 427.9 606 43.4
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 3.1e-114 416.8 613 40.5
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 1.7e-112 411.0 632 41.5
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 1.7e-112 411.0 604 42.5
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 2.7e-110 403.7 544 42.8
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 4.6e-110 402.9 636 41.7
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.1e-106 391.7 629 40.5
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 2.4e-106 390.6 636 41.2
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.1e-103 381.7 612 40.7
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 2.1e-102 377.5 632 39.2
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 5.1e-101 372.9 620 40.0
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 6.6e-101 372.5 598 40.6
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.5e-100 371.3 643 39.5
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 9.6e-100 368.6 612 39.5
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 1.6e-99 367.9 613 38.2
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 7.6e-97 359.0 629 38.6
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 9.3e-95 352.1 637 39.6
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.2e-94 351.7 647 36.5
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 7.9e-94 349.0 596 35.6
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 7.9e-94 349.0 596 35.6
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 1.7e-88 331.3 638 35.1
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 1.3e-80 305.1 439 43.7
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.1e-78 297.7 595 38.0
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.6e-78 296.6 300 54.7
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 1.8e-77 294.7 443 42.2
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 5.7e-76 289.7 409 42.1
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 2.0e-73 281.2 532 35.0
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 3.0e-69 267.3 366 44.5
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.1e-66 256.9 353 43.9
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 2.9e-64 250.8 265 52.5
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 8.5e-64 249.2 405 40.0
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.5e-60 237.7 335 44.2
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 3.7e-59 233.8 264 50.0
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 1.1e-58 232.3 262 50.0
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.5e-57 228.4 347 42.4
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 1.4e-55 221.9 263 48.7
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 3.0e-45 187.6 656 25.9
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 6.7e-45 186.4 178 56.7
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 6.7e-45 186.4 354 36.4
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 5.5e-39 166.8 277 39.7
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 4.8e-35 153.7 179 48.6
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 1.5e-31 142.1 441 27.9
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.9e-31 141.7 329 32.5
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.6e-30 138.7 184 45.7
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 3.0e-29 134.4 328 32.0
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 5.2e-29 133.7 189 41.3
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-28 131.7 189 39.2
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.1e-26 124.4 511 24.3
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.1e-26 124.4 187 42.8
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 7.0e-26 123.2 213 39.0
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 9.2e-26 122.9 339 28.9
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 1.8e-21 108.6 72 75.0
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 2.6e-20 104.8 78 60.3
Medtr4g117730 Medicago truncatula HOM05D003539 ORTHO05D004111 5.7e-20 103.6 67 71.6
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.9e-19 100.5 116 50.9
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 3.2e-18 97.8 217 31.3
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 3.5e-17 94.4 604 22.8
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.3e-16 92.4 71 60.6
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 1.3e-16 92.4 71 60.6
Psat0s4462g0080 Pisum sativum HOM05D003539 ORTHO05D004111 3.0e-16 91.3 78 64.1
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 4.3e-15 87.4 125 42.4
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 8.9e-13 79.7 186 32.3
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 8.3e-11 73.2 136 34.6
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 7.8e-09 66.6 161 35.4
RcHm_v2.0_Chr2g0096831 Rosa chinensis HOM05D003539 ORTHO05D004111 7.3e-07 60.1 103 34.0
GSVIVG01026438001 Vitis vinifera HOM05D003539 ORTHO05D004111 6.2e-06 57.0 43 67.4
GSVIVG01026437001 Vitis vinifera HOM05D003539 ORTHO05D004111 8.1e-06 56.6 55 52.7


User provided reference genes

Program Settings