Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 1.7e-108 396.0 191 100.0
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 3.9e-105 384.8 191 96.9
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 8.6e-105 383.6 191 95.8
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 1.1e-104 383.3 191 96.3
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 1.5e-104 382.9 191 95.3
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 1.9e-104 382.5 191 94.8
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 2.5e-104 382.1 191 94.2
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 7.3e-104 380.6 191 94.8
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.3e-104 380.6 191 94.8
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.3e-104 380.6 191 94.8
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.3e-104 380.6 191 94.8
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.3e-104 380.6 191 94.8
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 9.5e-104 380.2 188 96.3
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 2.1e-103 379.0 185 97.3
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 2.1e-103 379.0 185 97.3
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 2.8e-103 378.6 185 96.8
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 3.6e-103 378.3 185 97.3
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 3.6e-103 378.3 191 94.2
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 3.6e-103 378.3 185 96.8
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 3.6e-103 378.3 185 96.8
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 3.6e-103 378.3 191 94.2
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 8.0e-103 377.1 185 94.6
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 96.2
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.4e-102 376.3 188 93.6
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.4e-102 376.3 188 93.6
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.4e-102 376.3 185 96.2
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.4e-102 376.3 185 96.2
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 2.3e-102 375.6 189 93.1
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 3.1e-102 375.2 185 95.1
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 3.1e-102 375.2 185 95.1
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 3.1e-102 375.2 185 95.1
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 6.8e-102 374.0 185 95.7
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 8.9e-102 373.6 186 94.6
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 8.9e-102 373.6 186 94.1
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 188 94.1
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 188 94.1
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 94.6
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 94.6
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.6e-101 372.1 191 92.1
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 2.6e-101 372.1 188 92.6
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.6e-101 372.1 191 91.6
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.6e-101 372.1 191 92.7
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 186 93.5
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.6e-101 372.1 185 94.6
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.4e-101 371.7 186 94.1
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.4e-101 371.7 186 94.1
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 3.4e-101 371.7 191 92.1
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 3.4e-101 371.7 185 94.6
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 5.8e-101 370.9 186 93.0
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 7.5e-101 370.5 188 92.6
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 7.5e-101 370.5 188 92.6
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 9.8e-101 370.2 191 91.1
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 9.8e-101 370.2 191 91.6
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 9.8e-101 370.2 185 93.5
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.3e-100 369.8 185 93.5
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.3e-100 369.8 188 92.0
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 1.3e-100 369.8 188 92.6
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.7e-100 369.4 185 93.5
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 1.7e-100 369.4 185 93.5
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 2.2e-100 369.0 185 94.6
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.9e-100 368.6 183 95.6
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.9e-100 368.6 185 94.1
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.7e-100 368.2 188 92.0
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 4.9e-100 367.9 185 94.1
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 4.9e-100 367.9 189 92.1
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 6.4e-100 367.5 185 93.0
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 8.3e-100 367.1 205 87.8
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 8.3e-100 367.1 192 91.1
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 8.3e-100 367.1 188 91.0
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.1e-99 366.7 185 91.9
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 1.4e-99 366.3 188 92.0
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.4e-99 366.3 183 95.1
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.4e-99 366.3 183 95.1
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.4e-99 366.3 191 91.1
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 1.9e-99 365.9 188 91.5
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 1.9e-99 365.9 188 91.5
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 1.9e-99 365.9 188 91.5
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.9e-99 365.9 191 90.1
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 2.4e-99 365.5 185 93.5
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 2.4e-99 365.5 186 91.9
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 2.4e-99 365.5 188 92.0
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 2.4e-99 365.5 188 92.0
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 2.4e-99 365.5 185 92.4
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 2.4e-99 365.5 191 88.5
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 2.4e-99 365.5 185 94.1
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 3.2e-99 365.2 188 91.0
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 3.2e-99 365.2 191 89.0
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.1e-99 364.8 191 89.5
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 4.1e-99 364.8 185 91.9
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 4.1e-99 364.8 192 90.6
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 4.1e-99 364.8 185 91.9
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 5.4e-99 364.4 188 91.5
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 7.0e-99 364.0 188 91.0
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 7.0e-99 364.0 191 89.5
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 7.0e-99 364.0 186 90.3
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.0e-99 364.0 185 91.4
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 7.0e-99 364.0 185 91.9
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 7.0e-99 364.0 196 88.8
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 9.2e-99 363.6 185 90.8
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 9.2e-99 363.6 183 91.8
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-98 363.2 193 89.1
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-98 363.2 193 89.1
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.2e-98 363.2 188 91.5
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.2e-98 363.2 191 89.0
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.2e-98 363.2 185 91.9
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.6e-98 362.8 188 91.0
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.6e-98 362.8 188 91.0
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-98 362.8 185 90.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.6e-98 362.8 191 88.0
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 1.6e-98 362.8 188 91.0
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.6e-98 362.8 185 91.4
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.0e-98 362.5 185 91.4
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 2.7e-98 362.1 185 89.7
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.6e-98 361.3 185 90.8
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 6.0e-98 360.9 188 89.4
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 6.0e-98 360.9 188 91.0
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 6.0e-98 360.9 188 91.0
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 6.0e-98 360.9 188 91.0
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 1.0e-97 360.1 188 89.9
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.3e-97 359.8 185 91.4
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.7e-97 359.4 186 90.3
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 2.3e-97 359.0 191 88.0
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 3.0e-97 358.6 187 89.3
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 3.9e-97 358.2 185 91.4
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 8.6e-97 357.1 188 89.4
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.5e-96 356.3 188 89.4
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.9e-96 355.9 191 88.0
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.9e-96 355.9 197 86.3
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 2.1e-95 352.4 188 88.3
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 2.1e-95 352.4 188 88.3
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 5.2e-94 347.8 181 90.6
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 6.8e-94 347.4 251 71.3
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 8.9e-94 347.1 185 87.6
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 3.4e-93 345.1 182 86.3
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 3.7e-92 341.7 185 84.9
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 6.4e-92 340.9 182 87.9
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.0e-90 334.3 183 88.5
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 1.2e-87 326.6 190 78.9
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.6e-87 326.2 191 81.2
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.6e-87 326.2 167 93.4
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.1e-86 323.6 182 83.5
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.6e-81 304.3 185 78.9
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 9.6e-80 300.4 152 90.1
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.4e-75 285.8 141 95.7
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.6e-74 281.6 141 93.6
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.1e-72 276.9 140 90.0
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 3.3e-72 275.4 141 90.1
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.8e-68 261.9 130 91.5
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.2e-67 258.8 136 89.7
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.3e-65 253.4 147 84.4
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.5e-64 250.0 128 86.7
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.9e-64 249.6 185 70.3
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.3e-64 248.8 186 68.8
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.6e-63 246.5 163 75.5
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 9.3e-59 230.7 188 53.7
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 3.9e-57 225.3 189 55.0
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 2.0e-53 213.0 166 66.9
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 3.9e-49 198.7 157 67.5
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.5e-45 185.3 90 91.1
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.9e-44 182.6 115 74.8
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.6e-42 175.3 90 86.7
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.9e-42 174.5 87 88.5
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-41 174.1 103 77.7
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.0e-41 172.6 87 87.4
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 5.1e-41 171.8 87 87.4
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.9e-40 169.9 87 87.4
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.3e-40 169.1 87 86.2
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.3e-40 169.1 87 86.2
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.0e-37 159.8 87 85.1
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.6e-37 159.5 157 54.8
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.1e-35 154.1 101 78.2
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.6e-34 148.7 79 83.5
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 4.6e-34 148.7 101 75.2
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 2.0e-32 143.3 69 87.0
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 2.2e-31 139.8 70 97.1
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.2e-27 125.9 62 87.1
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.2e-27 125.9 62 87.1
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.2e-27 125.9 62 87.1
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.2e-27 125.9 62 87.1
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.2e-27 125.9 62 87.1
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.2e-27 125.9 62 87.1
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.2e-15 86.7 44 88.6
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 4.8e-15 85.5 44 93.2
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 9.1e-14 81.3 55 72.7


User provided reference genes

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