Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 4.6e-172 607.8 315 100.0
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 5.9e-159 564.3 315 91.7
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 8.7e-155 550.4 315 87.9
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.8e-152 542.7 314 88.5
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 1.3e-150 536.6 290 93.4
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.3e-145 520.0 315 83.2
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 1.8e-144 516.2 313 82.4
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 2.0e-143 512.7 315 81.9
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 3.4e-143 511.9 315 81.6
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 1.3e-142 510.0 315 81.0
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 1.9e-141 506.1 316 81.0
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 2.6e-135 485.7 314 78.0
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 2.2e-134 482.6 314 75.5
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 6.5e-134 481.1 314 74.5
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 2.5e-133 479.2 314 76.1
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 5.5e-133 478.0 316 74.4
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 9.4e-133 477.2 314 75.5
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 1.2e-132 476.9 314 74.8
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.1e-132 476.1 314 76.4
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.1e-132 476.1 314 75.5
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 3.6e-132 475.3 314 74.2
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 6.1e-132 474.6 315 73.7
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 8.0e-132 474.2 314 75.5
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 1.0e-131 473.8 314 75.5
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 1.4e-131 473.4 311 76.5
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 1.4e-131 473.4 313 75.7
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 2.3e-131 472.6 313 76.0
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 2.0e-130 469.5 313 73.8
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 3.3e-130 468.8 314 74.5
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 7.5e-130 467.6 299 77.6
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 9.7e-130 467.2 314 73.9
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.3e-129 466.8 314 73.9
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 2.8e-129 465.7 314 74.2
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 3.7e-129 465.3 314 74.5
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 6.3e-129 464.5 312 73.1
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 8.2e-129 464.2 314 73.6
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 8.2e-129 464.2 312 72.8
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.8e-128 463.0 314 73.9
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 9.1e-128 460.7 312 72.4
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 1.2e-127 460.3 312 72.8
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.2e-127 460.3 314 72.3
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.2e-127 460.3 312 72.4
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 2.7e-127 459.1 314 73.6
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.7e-127 459.1 312 73.4
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 5.9e-127 458.0 311 71.7
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 5.9e-127 458.0 314 72.6
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 7.7e-127 457.6 312 72.1
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.2e-126 456.1 312 72.8
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 2.2e-126 456.1 312 72.8
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.9e-126 455.7 312 72.4
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 3.8e-126 455.3 315 71.7
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 5.0e-126 454.9 341 67.7
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 6.5e-126 454.5 315 73.0
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 1.1e-125 453.8 314 71.0
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 1.9e-125 453.0 314 71.3
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 2.5e-125 452.6 314 70.7
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 5.5e-125 451.4 314 71.3
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 2.7e-124 449.1 313 70.6
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.7e-124 449.1 315 71.7
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 3.6e-124 448.7 313 71.9
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 4.7e-124 448.4 299 72.2
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 6.1e-124 448.0 308 73.1
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 8.0e-124 447.6 316 70.3
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.4e-123 446.8 313 72.2
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 2.3e-123 446.0 314 69.7
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 2.3e-123 446.0 314 69.7
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 3.0e-123 445.7 314 69.4
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 6.8e-123 444.5 314 70.7
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 6.8e-123 444.5 314 69.4
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 6.8e-123 444.5 314 69.1
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 6.8e-123 444.5 342 67.5
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 8.8e-123 444.1 310 70.3
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 8.8e-123 444.1 316 69.9
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 8.8e-123 444.1 313 70.0
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 8.8e-123 444.1 292 75.3
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.2e-122 443.7 313 69.6
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 1.2e-122 443.7 315 69.2
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 1.2e-122 443.7 293 73.4
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 9.8e-122 440.7 314 68.8
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 9.8e-122 440.7 314 68.2
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 9.8e-122 440.7 316 69.6
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 1.3e-121 440.3 313 70.6
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 2.2e-121 439.5 299 71.2
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 2.2e-121 439.5 311 71.1
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 3.7e-121 438.7 299 70.9
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 3.7e-121 438.7 299 70.9
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 4.8e-121 438.3 299 70.9
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 3.1e-120 435.6 310 71.3
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 4.1e-120 435.3 303 71.9
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 7.0e-120 434.5 327 67.3
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.0e-120 434.5 327 67.3
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.0e-120 434.5 327 67.3
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.6e-119 433.3 310 71.0
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.0e-119 433.0 310 69.7
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 2.0e-119 433.0 318 68.2
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 2.7e-119 432.6 302 70.5
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.5e-119 432.2 327 66.7
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 5.9e-119 431.4 315 68.9
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 7.7e-119 431.0 316 67.7
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 7.7e-119 431.0 314 69.4
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 1.0e-118 430.6 313 68.7
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 2.3e-118 429.5 302 70.2
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 8.6e-118 427.6 286 72.7
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 1.9e-117 426.4 315 67.6
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.5e-117 426.0 337 65.3
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 5.5e-117 424.9 327 66.4
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 6.1e-116 421.4 269 76.2
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 8.8e-115 417.5 298 69.1
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 7.5e-114 414.5 315 67.9
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 9.8e-114 414.1 308 66.9
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 2.4e-112 409.5 257 75.9
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 3.1e-112 409.1 314 65.0
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 5.9e-111 404.8 308 66.6
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 3.3e-109 399.1 291 66.3
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 3.4e-106 389.0 307 64.2
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 7.5e-106 387.9 326 63.5
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 4.9e-105 385.2 307 63.5
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.1e-104 384.0 224 86.6
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.4e-104 383.6 253 73.1
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 2.1e-100 369.8 235 78.7
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 6.6e-94 348.2 315 59.7
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 3.6e-92 342.4 298 59.4
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.4e-90 335.9 238 71.4
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 7.5e-90 334.7 314 56.7
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 6.6e-86 321.6 291 55.7
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 2.1e-84 316.6 292 55.8
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.2e-79 300.8 307 53.1
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 1.5e-77 293.9 274 57.7
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 6.9e-75 285.0 300 48.0
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 3.8e-73 279.3 277 54.9
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 3.5e-71 272.7 304 48.4
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.3e-65 254.2 293 47.8
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 2.4e-64 250.0 220 60.0
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 4.6e-47 192.6 296 38.5
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 4.3e-45 186.0 104 88.5
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 5.3e-43 179.1 173 58.4
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 1.1e-35 154.8 93 84.9
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 5.3e-27 125.9 94 64.9
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 2.5e-24 117.1 89 66.3
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 3.6e-23 113.2 79 70.9
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 4.8e-20 102.8 115 51.3
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.7e-17 94.4 90 55.6
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.7e-17 94.4 90 55.6
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 8.2e-12 75.5 90 45.6
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 3.5e-10 70.1 100 47.0


User provided reference genes

Program Settings