Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28948 Trifolium pratense HOM05D003397 ORTHO05D004390 1.9e-47 192.2 98 100.0
TPR.G34613 Trifolium pratense HOM05D003397 ORTHO05D004390 9.4e-23 110.2 58 89.7
Medtr3g073860 Medicago truncatula HOM05D003397 ORTHO05D004390 4.7e-22 107.8 58 87.9
Psat5g137080 Pisum sativum HOM05D003397 ORTHO05D004390 1.4e-21 106.3 58 86.2
arahy.Tifrunner.gnm1.ann1.L14VXE Arachis hypogaea HOM05D003397 ORTHO05D004390 1.1e-20 103.2 152 46.1
arahy.Tifrunner.gnm1.ann1.ZST20A Arachis hypogaea HOM05D003397 ORTHO05D004390 1.1e-20 103.2 152 46.1
Glyma.06G105900 Glycine max HOM05D003397 ORTHO05D004390 9.7e-20 100.1 153 45.1
PGR042G1140 Punica granatum HOM05D003397 ORTHO05D004390 9.7e-20 100.1 153 43.8
Eucgr.F00484 Eucalyptus grandis HOM05D003397 ORTHO05D004390 1.3e-19 99.8 153 43.1
Glyma.04G104900 Glycine max HOM05D003397 ORTHO05D004390 1.3e-19 99.8 153 43.8
Lj1g0005089 Lotus japonicus HOM05D003397 ORTHO05D004390 1.7e-19 99.4 152 44.7
Peaxi162Scf00310g00211 Petunia axillaris HOM05D003397 ORTHO05D004390 1.7e-19 99.4 153 45.1
Nitab4.5_0005253g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 3.7e-19 98.2 153 44.4
CANSAT25G3899 Cannabis sativa HOM05D003397 ORTHO05D004390 6.3e-19 97.4 151 43.7
CsaV3_5G023610 Cucumis sativus L. HOM05D003397 ORTHO05D004390 6.3e-19 97.4 152 41.4
Phvul.009G028700 Phaseolus vulgaris HOM05D003397 ORTHO05D004390 6.3e-19 97.4 153 43.8
Dinv13041 Davidia involucrata HOM05D003397 ORTHO05D004390 1.8e-18 95.9 153 41.8
Lalb_Chr11g0065541 Lupinus albus HOM05D003397 ORTHO05D004390 2.4e-18 95.5 153 43.1
Sopen12g029600 Solanum pennellii HOM05D003397 ORTHO05D004390 2.4e-18 95.5 153 43.1
VMungo1309G3072 Vigna mungo HOM05D003397 ORTHO05D004390 2.4e-18 95.5 153 43.1
Solyc12g056940.2 Solanum lycopersicum HOM05D003397 ORTHO05D004390 3.1e-18 95.1 153 43.1
Cc10_g05850 Coffea canephora HOM05D003397 ORTHO05D004390 4.1e-18 94.7 153 41.2
Ciclev10000007m.g Citrus clementina HOM05D003397 ORTHO05D004390 5.3e-18 94.4 64 67.2
Nitab4.5_0000469g0180 Nicotiana tabacum HOM05D003397 ORTHO05D004390 5.3e-18 94.4 153 43.1
Ca_15227_v3 Cicer arietinum L. HOM05D003397 ORTHO05D004390 7.0e-18 94.0 62 74.2
COL.COLO4_16461 Corchorus olitorius HOM05D003397 ORTHO05D004390 7.0e-18 94.0 62 71.0
Gohir.D05G269700 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.6e-17 92.8 58 69.0
THA.LOC104813126 Tarenaya hassleriana HOM05D003397 ORTHO05D004390 1.6e-17 92.8 155 41.9
Sed0010592 Sechium edule HOM05D003397 ORTHO05D004390 2.0e-17 92.4 152 41.4
PGSC0003DMG400008551 Solanum tuberosum HOM05D003397 ORTHO05D004390 2.0e-17 92.4 153 41.2
Thecc.08G111500 Theobroma cacao HOM05D003397 ORTHO05D004390 2.0e-17 92.4 62 69.4
Actinidia29577 Actinidia chinensis HOM05D003397 ORTHO05D004390 2.6e-17 92.0 153 41.2
Peaxi162Scf00160g01527 Petunia axillaris HOM05D003397 ORTHO05D004390 2.6e-17 92.0 153 41.2
BcaC07g37499 Brassica carinata HOM05D003397 ORTHO05D004390 4.5e-17 91.3 155 42.6
A08p07970 Brassica napus HOM05D003397 ORTHO05D004390 4.5e-17 91.3 155 42.6
BolC8t47818H Brassica oleracea HOM05D003397 ORTHO05D004390 4.5e-17 91.3 155 42.6
BraA08t32819Z Brassica rapa HOM05D003397 ORTHO05D004390 4.5e-17 91.3 155 42.6
CSS0020243 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 4.5e-17 91.3 153 40.5
CSS0020930 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 4.5e-17 91.3 153 40.5
Gorai.009G282300 Gossypium raimondii HOM05D003397 ORTHO05D004390 4.5e-17 91.3 58 69.0
Lalb_Chr08g0241871 Lupinus albus HOM05D003397 ORTHO05D004390 4.5e-17 91.3 153 42.5
vmacro04766 Vaccinium macrocarpon HOM05D003397 ORTHO05D004390 4.5e-17 91.3 153 39.9
Potri.005G169100 Populus trichocarpa HOM05D003397 ORTHO05D004390 5.9e-17 90.9 62 67.7
Rhsim07G0200500 Rhododendron simsii HOM05D003397 ORTHO05D004390 5.9e-17 90.9 153 40.5
Dinv44744 Davidia involucrata HOM05D003397 ORTHO05D004390 7.7e-17 90.5 153 41.2
Gohir.A01G186450 Gossypium hirsutum HOM05D003397 ORTHO05D004390 7.7e-17 90.5 153 41.2
Gohir.D01G183100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 7.7e-17 90.5 153 41.2
Gorai.002G219400 Gossypium raimondii HOM05D003397 ORTHO05D004390 7.7e-17 90.5 153 41.2
MELO3C022793.2 Cucumis melo HOM05D003397 ORTHO05D004390 1.0e-16 90.1 77 55.8
Duzib116G0371 Durio zibethinus HOM05D003397 ORTHO05D004390 1.0e-16 90.1 153 41.2
Lj4C108T3 Lonicera japonica HOM05D003397 ORTHO05D004390 1.0e-16 90.1 62 66.1
Sabra02G0073200 Salix brachista HOM05D003397 ORTHO05D004390 1.0e-16 90.1 62 66.1
GSVIVG01008991001 Vitis vinifera HOM05D003397 ORTHO05D004390 1.0e-16 90.1 62 64.5
Aa31LG6G8980 Aethionema arabicum HOM05D003397 ORTHO05D004390 1.3e-16 89.7 155 40.6
BcaB04g17823 Brassica carinata HOM05D003397 ORTHO05D004390 1.3e-16 89.7 155 41.9
Nitab4.5_0006548g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 1.7e-16 89.4 154 40.3
Nitab4.5_0000421g0140 Nicotiana tabacum HOM05D003397 ORTHO05D004390 2.2e-16 89.0 153 39.9
ClCG03G009000 Citrullus lanatus HOM05D003397 ORTHO05D004390 2.9e-16 88.6 61 63.9
Gohir.A05G268100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 2.9e-16 88.6 58 67.2
Nn1g05275 Nelumbo nucifera HOM05D003397 ORTHO05D004390 2.9e-16 88.6 62 62.9
Atru.chr13.1263 Acer truncatum HOM05D003397 ORTHO05D004390 3.8e-16 88.2 62 62.9
AT1G36160 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 3.8e-16 88.2 155 40.6
CSS0006750 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 5.0e-16 87.8 153 39.2
QL12p035954 Quercus lobata HOM05D003397 ORTHO05D004390 5.0e-16 87.8 62 64.5
TWI56G0794 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 5.0e-16 87.8 153 39.2
CiPaw.05G233000 Carya illinoinensis HOM05D003397 ORTHO05D004390 6.5e-16 87.4 62 62.9
Potri.002G092700 Populus trichocarpa HOM05D003397 ORTHO05D004390 6.5e-16 87.4 62 64.5
Prupe.1G512000 Prunus persica HOM05D003397 ORTHO05D004390 6.5e-16 87.4 61 65.6
Sp1g30640 Schrenkiella parvula HOM05D003397 ORTHO05D004390 6.5e-16 87.4 155 40.0
TAR381G1558 Trochodendron aralioides HOM05D003397 ORTHO05D004390 6.5e-16 87.4 62 62.9
Thhalv10003506m.g Eutrema salsugineum HOM05D003397 ORTHO05D004390 8.5e-16 87.0 155 39.4
Aqoxy5G01966 Aquilegia oxysepala HOM05D003397 ORTHO05D004390 1.1e-15 86.7 153 39.2
Carub.0001s3360 Capsella rubella HOM05D003397 ORTHO05D004390 1.1e-15 86.7 155 40.0
CiPaw.06G022200 Carya illinoinensis HOM05D003397 ORTHO05D004390 1.9e-15 85.9 62 64.5
PSO210G7545 Papaver somniferum HOM05D003397 ORTHO05D004390 1.9e-15 85.9 62 62.9
SHI09383 Sapria himalayana HOM05D003397 ORTHO05D004390 1.9e-15 85.9 152 39.5
Sc04g0006510 Simmondsia chinensis HOM05D003397 ORTHO05D004390 2.5e-15 85.5 62 66.1
Sc20g0003310 Simmondsia chinensis HOM05D003397 ORTHO05D004390 2.5e-15 85.5 62 66.1
Haze_00572 Corylus avellana HOM05D003397 ORTHO05D004390 3.2e-15 85.1 62 61.3
MBI02_g30884_MAGBIO Magnolia biondii HOM05D003397 ORTHO05D004390 3.2e-15 85.1 62 61.3
TAR625G0333 Trochodendron aralioides HOM05D003397 ORTHO05D004390 3.2e-15 85.1 62 61.3
Manes.02G155300 Manihot esculenta HOM05D003397 ORTHO05D004390 5.5e-15 84.3 62 59.7
PSO447G0125 Papaver somniferum HOM05D003397 ORTHO05D004390 5.5e-15 84.3 62 61.3
CARHR283610 Cardamine hirsuta HOM05D003397 ORTHO05D004390 7.2e-15 84.0 149 39.6
CDE05G1314 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 7.2e-15 84.0 153 37.3
CDE05G2113 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 7.2e-15 84.0 153 37.3
Gohir.A01G186651 Gossypium hirsutum HOM05D003397 ORTHO05D004390 9.4e-15 83.6 62 62.9
Manes.18G070300 Manihot esculenta HOM05D003397 ORTHO05D004390 9.4e-15 83.6 61 60.7
RcHm_v2.0_Chr7g0239931 Rosa chinensis HOM05D003397 ORTHO05D004390 9.4e-15 83.6 62 62.9
CANSAT11G0938 Cannabis sativa HOM05D003397 ORTHO05D004390 1.2e-14 83.2 149 38.9
Nn5g29020 Nelumbo nucifera HOM05D003397 ORTHO05D004390 1.2e-14 83.2 62 62.9
AUR62034355 Chenopodium quinoa HOM05D003397 ORTHO05D004390 2.7e-14 82.0 148 39.2
Cpa.g.sc66.90 Carica papaya HOM05D003397 ORTHO05D004390 3.6e-14 81.6 62 61.3
FvH4_5g38000 Fragaria vesca HOM05D003397 ORTHO05D004390 3.6e-14 81.6 61 62.3
FAN08G3668 Fragaria x ananassa HOM05D003397 ORTHO05D004390 3.6e-14 81.6 61 62.3
FAN13G2833 Fragaria x ananassa HOM05D003397 ORTHO05D004390 3.6e-14 81.6 61 62.3
FAN18G1561 Fragaria x ananassa HOM05D003397 ORTHO05D004390 3.6e-14 81.6 61 62.3
MSTRG.944 Avicennia marina HOM05D003397 ORTHO05D004390 4.7e-14 81.3 149 38.9
TWI12G0718 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 4.7e-14 81.3 62 59.7
EL10Ac1g01671 Beta vulgaris HOM05D003397 ORTHO05D004390 6.1e-14 80.9 62 59.7
HPP92_027255 Vanilla planifolia HOM05D003397 ORTHO05D004390 6.1e-14 80.9 62 58.1
AL1G50870 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 1.0e-13 80.1 153 37.9
Cfa015924 Carpinus fangiana HOM05D003397 ORTHO05D004390 1.0e-13 80.1 62 58.1
MD15G1363500 Malus domestica HOM05D003397 ORTHO05D004390 1.8e-13 79.3 61 57.4
Carub.0001s3361 Capsella rubella HOM05D003397 ORTHO05D004390 3.0e-13 78.6 155 40.6
AUR62022354 Chenopodium quinoa HOM05D003397 ORTHO05D004390 4.0e-13 78.2 148 37.8
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 6.8e-13 77.4 61 60.7
Oeu024555.1 Olea europaea HOM05D003397 ORTHO05D004390 1.5e-12 76.3 62 59.7
DCAR_013178 Daucus carota HOM05D003397 ORTHO05D004390 2.6e-12 75.5 154 36.4
ECA232G1190 Erigeron canadensis HOM05D003397 ORTHO05D004390 2.6e-12 75.5 149 36.2
MD08G1178000 Malus domestica HOM05D003397 ORTHO05D004390 3.4e-12 75.1 61 54.1
AL1G50880 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 5.7e-12 74.3 69 56.5
AT1G36180 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 5.7e-12 74.3 155 37.4
Os10g0363300 Oryza sativa ssp. japonica HOM05D003397 ORTHO05D004390 5.7e-12 74.3 61 57.4
Migut.C00221 Erythranthe guttata HOM05D003397 ORTHO05D004390 7.5e-12 73.9 57 59.6
Peaxi162Scf00030g01821 Petunia axillaris HOM05D003397 ORTHO05D004390 2.2e-11 72.4 153 35.9
Ah.05g168580 Amaranthus hybridus HOM05D003397 ORTHO05D004390 4.8e-11 71.2 58 55.2
Lsat_1_v5_gn_9_44420 Lactuca sativa HOM05D003397 ORTHO05D004390 4.8e-11 71.2 149 36.9
ATR0564G238 Amborella trichopoda HOM05D003397 ORTHO05D004390 6.3e-11 70.9 153 34.0
SGA_v2.0_scaffold201G41423 Striga asiatica HOM05D003397 ORTHO05D004390 6.3e-11 70.9 61 50.8
Zm00001eb223980 Zea mays HOM05D003397 ORTHO05D004390 1.8e-10 69.3 151 36.4
HanXRQChr11g0320961 Helianthus annuus HOM05D003397 ORTHO05D004390 2.4e-10 68.9 149 34.2
HanXRQChr05g0147241 Helianthus annuus HOM05D003397 ORTHO05D004390 5.4e-10 67.8 149 36.2
Lsat_1_v5_gn_3_57521 Lactuca sativa HOM05D003397 ORTHO05D004390 5.4e-10 67.8 60 51.7
ECA236G4037 Erigeron canadensis HOM05D003397 ORTHO05D004390 7.0e-10 67.4 149 34.9
unitig_46.g18003 Utricularia gibba HOM05D003397 ORTHO05D004390 1.2e-09 66.6 149 34.9
BraA06t23676Z Brassica rapa HOM05D003397 ORTHO05D004390 3.5e-09 65.1 148 33.8
SEGI_22371 Sequoiadendron giganteum HOM05D003397 ORTHO05D004390 7.7e-09 63.9 152 33.6
A06p04730 Brassica napus HOM05D003397 ORTHO05D004390 1.7e-08 62.8 149 34.2
Pp3c4_17500 Physcomitrium patens HOM05D003397 ORTHO05D004390 6.5e-08 60.8 154 33.1
BcaB07g33794 Brassica carinata HOM05D003397 ORTHO05D004390 4.2e-07 58.2 65 44.6
Mapoly0002s0049 Marchantia polymorpha HOM05D003397 ORTHO05D004390 9.4e-07 57.0 150 31.3
Pp3c13_14480 Physcomitrium patens HOM05D003397 ORTHO05D004390 1.6e-06 56.2 154 31.8
Medtr3g073820 Medicago truncatula HOM05D003397 ORTHO05D004390 6.1e-06 54.3 57 50.9


User provided reference genes

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