Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 4.8e-194 681.0 352 100.0
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.1e-182 643.3 352 93.8
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 3.0e-180 635.2 353 93.5
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.4e-177 626.3 378 87.8
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 2.0e-176 622.5 353 91.8
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 3.8e-167 591.7 352 87.2
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 2.1e-165 585.9 341 88.9
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 3.6e-165 585.1 332 90.1
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 8.0e-165 583.9 332 89.8
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.2e-160 570.1 332 88.9
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.2e-160 570.1 346 84.4
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 5.9e-160 567.8 349 84.0
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 8.5e-159 563.9 350 84.0
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.4e-155 552.0 338 82.0
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 3.4e-155 552.0 349 80.8
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.7e-154 549.7 338 83.4
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.8e-154 548.9 343 82.5
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 6.3e-154 547.7 343 82.5
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.3e-154 547.4 343 81.6
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.4e-153 546.6 351 80.1
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 4.1e-153 545.0 328 82.6
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 4.1e-153 545.0 347 80.4
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 5.4e-153 544.7 347 80.7
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.2e-152 543.5 342 80.7
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.2e-152 543.5 348 79.0
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 2.7e-152 542.3 337 80.7
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.5e-152 542.0 345 80.9
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 4.5e-152 541.6 346 79.8
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.0e-151 540.4 326 84.0
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.3e-151 539.3 356 78.4
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.9e-151 538.9 345 80.3
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 3.8e-151 538.5 344 80.5
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 3.8e-151 538.5 348 79.3
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 8.6e-151 537.3 348 78.7
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.1e-150 537.0 351 79.2
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.9e-150 536.2 346 79.5
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 3.3e-150 535.4 327 82.6
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 5.6e-150 534.6 338 81.4
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 9.5e-150 533.9 347 77.8
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 9.5e-150 533.9 326 82.8
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 1.2e-149 533.5 325 82.5
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.2e-149 533.5 349 78.2
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 1.2e-149 533.5 338 80.8
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.6e-149 533.1 326 82.2
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 2.1e-149 532.7 331 81.3
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 2.8e-149 532.3 343 79.3
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.8e-149 532.3 353 77.6
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 4.7e-149 531.6 325 82.2
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 4.7e-149 531.6 325 82.2
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 4.7e-149 531.6 348 78.4
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 6.1e-149 531.2 325 82.2
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 6.1e-149 531.2 351 78.3
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-148 530.4 325 81.8
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.0e-148 530.4 349 78.2
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.4e-148 530.0 330 80.6
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.4e-148 530.0 349 77.7
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.4e-148 530.0 351 76.6
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.8e-148 529.6 323 83.0
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.8e-148 529.6 348 77.3
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 2.3e-148 529.3 351 78.1
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 2.3e-148 529.3 339 79.1
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.0e-148 528.9 342 78.7
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.0e-148 528.9 323 82.4
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 3.0e-148 528.9 333 80.2
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 4.0e-148 528.5 332 79.5
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 4.0e-148 528.5 346 78.3
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.2e-148 528.1 349 77.7
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.8e-148 527.7 322 81.4
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 6.8e-148 527.7 349 76.8
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 8.9e-148 527.3 325 81.2
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.2e-147 526.9 326 81.3
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.2e-147 526.9 343 77.6
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.5e-147 526.6 343 78.7
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 1.5e-147 526.6 363 74.7
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 5.7e-147 524.6 354 77.1
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 5.7e-147 524.6 354 76.6
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.7e-147 524.6 354 76.6
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.7e-147 524.6 354 76.6
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 7.5e-147 524.2 340 78.5
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.5e-147 524.2 354 76.6
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.3e-146 523.5 354 76.8
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.3e-146 523.5 354 76.8
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 2.2e-146 522.7 348 77.3
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 2.9e-146 522.3 329 81.5
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 2.9e-146 522.3 354 75.7
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 3.7e-146 521.9 379 72.8
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 6.4e-146 521.2 382 72.3
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.3e-146 520.8 354 76.0
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.8e-145 519.6 336 79.2
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 2.7e-144 515.8 323 80.2
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.5e-144 515.4 371 73.0
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 7.8e-144 514.2 287 90.6
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.3e-143 512.7 340 76.8
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.9e-142 509.6 372 71.8
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.5e-142 509.2 339 76.1
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 7.3e-142 507.7 301 85.4
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.6e-141 506.5 351 74.9
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.7e-141 505.0 351 75.8
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.6e-139 499.2 325 76.6
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 7.5e-139 497.7 297 83.8
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 2.9e-138 495.7 361 73.4
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.4e-138 494.6 325 76.9
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 8.3e-138 494.2 323 77.7
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.6e-136 488.4 346 74.3
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 8.6e-135 484.2 391 67.0
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.4e-132 476.9 345 72.2
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.8e-132 476.5 348 71.3
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 5.8e-131 471.5 325 71.4
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 7.5e-131 471.1 344 73.0
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.2e-128 463.8 399 64.2
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 4.6e-128 461.8 364 66.5
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 6.0e-128 461.5 325 73.5
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 6.0e-128 461.5 350 69.7
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.1e-126 457.2 248 94.4
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 4.9e-122 441.8 321 68.2
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 6.4e-122 441.4 335 69.9
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.1e-121 440.7 324 67.0
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 1.9e-121 439.9 262 84.4
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 2.7e-120 436.0 327 66.4
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 7.8e-120 434.5 324 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.7e-119 433.3 324 66.7
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 9.6e-118 427.6 315 67.6
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 4.0e-116 422.2 283 77.4
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 8.9e-116 421.0 302 69.5
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.9e-115 417.5 259 80.7
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-112 410.6 368 61.7
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 6.0e-112 408.3 327 61.8
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.5e-110 402.9 321 62.6
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 4.2e-105 385.6 245 78.8
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.3e-103 379.8 329 62.9
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 5.1e-103 378.6 325 64.0
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.8e-101 372.9 300 62.7
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 8.1e-101 371.3 240 78.8
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.1e-100 370.9 238 79.8
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-100 369.8 371 55.8
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.4e-100 369.8 274 66.1
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.4e-98 361.7 272 70.6
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.6e-96 355.5 238 74.8
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-94 350.9 248 73.0
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.5e-94 350.5 350 57.7
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.4e-92 344.0 234 75.2
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.8e-92 343.6 316 57.0
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.3e-85 320.9 196 82.7
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 5.7e-78 295.4 203 79.3
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.0e-71 273.1 285 56.5
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 3.2e-65 253.1 254 61.0
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.3e-61 241.1 299 47.5
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.4e-60 236.9 147 80.3
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.5e-58 228.8 161 66.5
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.1e-54 218.0 133 78.9
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 3.6e-48 196.4 102 90.2
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.0e-47 194.9 99 96.0
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 8.8e-47 191.8 126 72.2
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 2.6e-46 190.3 129 75.2
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 4.8e-45 186.0 236 41.5
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.8e-44 184.1 351 41.0
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 4.0e-39 166.4 210 46.2
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.7e-37 159.8 103 75.7
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 3.8e-34 149.8 82 86.6
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.0e-34 149.4 99 70.7
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.1e-33 148.3 110 75.5
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 9.5e-33 145.2 76 92.1
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.6e-32 143.3 96 78.1
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.0e-31 141.7 88 76.1
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.5e-27 126.7 189 48.1
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 3.5e-27 126.7 73 82.2
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.6e-19 101.3 73 61.6
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 7.8e-19 99.0 73 75.3
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.9e-18 96.7 75 61.3
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.5e-17 94.7 62 77.4
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 1.8e-15 87.8 69 68.1
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.2e-14 85.1 73 61.6
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 3.4e-14 83.6 78 64.1
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-07 62.0 54 63.0


User provided reference genes

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