Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28123 Trifolium pratense HOM05D002762 ORTHO05D008831 0.0e+00 1248.0 616 100.0
Medtr4g118010 Medicago truncatula HOM05D002762 ORTHO05D008831 0.0e+00 1150.2 618 90.5
Ca_21567_v3 Cicer arietinum L. HOM05D002762 ORTHO05D008831 0.0e+00 1141.7 617 90.8
Psat4g031200 Pisum sativum HOM05D002762 ORTHO05D008831 0.0e+00 1140.9 618 90.1
Lj4g0021299 Lotus japonicus HOM05D002762 ORTHO05D008831 0.0e+00 1117.1 617 87.7
Phvul.003G097700 Phaseolus vulgaris HOM05D002762 ORTHO05D008831 0.0e+00 1094.0 619 85.6
VMungo1215G1507 Vigna mungo HOM05D002762 ORTHO05D008831 0.0e+00 1082.8 618 84.5
Glyma.17G019900 Glycine max HOM05D002762 ORTHO05D008831 0.0e+00 1082.0 620 84.8
Lalb_Chr07g0177471 Lupinus albus HOM05D002762 ORTHO05D008831 0.0e+00 1075.1 626 84.3
arahy.Tifrunner.gnm1.ann1.08LYWQ Arachis hypogaea HOM05D002762 ORTHO05D008831 1.5e-307 1058.9 617 83.5
arahy.Tifrunner.gnm1.ann1.ZAIR7G Arachis hypogaea HOM05D002762 ORTHO05D008831 6.5e-295 1016.9 607 82.0
QL06p006121 Quercus lobata HOM05D002762 ORTHO05D008831 3.0e-284 981.5 627 75.9
Haze_01004 Corylus avellana HOM05D002762 ORTHO05D008831 1.2e-277 959.5 675 71.0
Ciclev10004552m.g Citrus clementina HOM05D002762 ORTHO05D008831 9.7e-275 949.9 629 73.6
Gorai.006G255700 Gossypium raimondii HOM05D002762 ORTHO05D008831 2.2e-274 948.7 631 72.4
Thecc.04G271400 Theobroma cacao HOM05D002762 ORTHO05D008831 3.7e-274 948.0 631 73.1
CSS0041967 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 1.4e-273 946.0 630 72.1
Gohir.D09G232800 Gossypium hirsutum HOM05D002762 ORTHO05D008831 1.4e-273 946.0 631 72.4
Gohir.A09G231700 Gossypium hirsutum HOM05D002762 ORTHO05D008831 2.4e-273 945.3 631 72.3
GSVIVG01017858001 Vitis vinifera HOM05D002762 ORTHO05D008831 3.4e-272 941.4 629 73.0
TAR365G0003 Trochodendron aralioides HOM05D002762 ORTHO05D008831 3.8e-271 937.9 629 72.7
Duzib052G0147 Durio zibethinus HOM05D002762 ORTHO05D008831 8.5e-271 936.8 631 72.1
CANSAT78G1603 Cannabis sativa HOM05D002762 ORTHO05D008831 5.5e-270 934.1 634 71.9
Actinidia40215 Actinidia chinensis HOM05D002762 ORTHO05D008831 9.4e-270 933.3 623 71.6
Duzib212G0752 Durio zibethinus HOM05D002762 ORTHO05D008831 3.6e-269 931.4 626 72.2
TWI53G0007 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 1.0e-268 929.9 627 72.7
Rhsim04G0212200 Rhododendron simsii HOM05D002762 ORTHO05D008831 1.8e-268 929.1 628 70.4
MD16G1180200 Malus domestica HOM05D002762 ORTHO05D008831 3.7e-266 921.4 632 71.4
Potri.010G028600 Populus trichocarpa HOM05D002762 ORTHO05D008831 4.8e-266 921.0 636 70.8
RcHm_v2.0_Chr4g0419641 Rosa chinensis HOM05D002762 ORTHO05D008831 1.0e-263 913.3 635 70.9
FvH4_4g14000 Fragaria vesca HOM05D002762 ORTHO05D008831 8.5e-263 910.2 631 71.2
MBI19_g15847_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D008831 9.4e-262 906.7 628 71.7
FAN12G0174 Fragaria x ananassa HOM05D002762 ORTHO05D008831 1.6e-261 906.0 631 70.8
ClCG06G005650 Citrullus lanatus HOM05D002762 ORTHO05D008831 3.6e-261 904.8 631 71.5
ATR0626G043 Amborella trichopoda HOM05D002762 ORTHO05D008831 1.0e-260 903.3 635 69.1
FAN22G0551 Fragaria x ananassa HOM05D002762 ORTHO05D008831 1.0e-260 903.3 631 70.2
COL.COLO4_13977 Corchorus olitorius HOM05D002762 ORTHO05D008831 3.0e-260 901.7 631 70.7
CSS0031724 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 2.2e-258 895.6 609 71.3
Aqoxy5G00558 Aquilegia oxysepala HOM05D002762 ORTHO05D008831 2.8e-258 895.2 620 68.5
FAN07G1246 Fragaria x ananassa HOM05D002762 ORTHO05D008831 1.1e-257 893.3 631 70.0
CsaV3_6G005500 Cucumis sativus L. HOM05D002762 ORTHO05D008831 1.8e-257 892.5 631 71.0
Sopen01g032170 Solanum pennellii HOM05D002762 ORTHO05D008831 2.0e-256 889.0 625 68.2
Solyc01g080360.3 Solanum lycopersicum HOM05D002762 ORTHO05D008831 1.0e-255 886.7 625 68.2
CAN.G889.17 Capsicum annuum HOM05D002762 ORTHO05D008831 3.8e-255 884.8 626 67.4
Migut.G00243 Erythranthe guttata HOM05D002762 ORTHO05D008831 6.5e-255 884.0 620 67.9
MSTRG.3975 Avicennia marina HOM05D002762 ORTHO05D008831 1.9e-254 882.5 620 67.7
Migut.G00245 Erythranthe guttata HOM05D002762 ORTHO05D008831 1.9e-254 882.5 620 67.6
CiPaw.01G157200 Carya illinoinensis HOM05D002762 ORTHO05D008831 1.2e-253 879.8 573 74.9
Sc19g0004720 Simmondsia chinensis HOM05D002762 ORTHO05D008831 1.2e-253 879.8 634 68.3
DCAR_030580 Daucus carota HOM05D002762 ORTHO05D008831 2.1e-253 879.0 620 68.7
Manes.03G187600 Manihot esculenta HOM05D002762 ORTHO05D008831 6.8e-252 874.0 608 69.4
THA.LOC104802606 Tarenaya hassleriana HOM05D002762 ORTHO05D008831 3.7e-250 868.2 627 68.9
vmacro08246 Vaccinium macrocarpon HOM05D002762 ORTHO05D008831 1.4e-249 866.3 657 65.0
Nn4g26133 Nelumbo nucifera HOM05D002762 ORTHO05D008831 5.4e-249 864.4 593 71.3
Sabra10G0012300 Salix brachista HOM05D002762 ORTHO05D008831 2.0e-248 862.4 643 67.2
Cc03_g02810 Coffea canephora HOM05D002762 ORTHO05D008831 2.9e-247 858.6 625 65.9
AUR62033230 Chenopodium quinoa HOM05D002762 ORTHO05D008831 5.0e-247 857.8 628 67.0
SGA_v2.0_scaffold237G43848 Striga asiatica HOM05D002762 ORTHO05D008831 5.0e-247 857.8 622 65.8
Hund09035 Selenicereus undatus HOM05D002762 ORTHO05D008831 1.5e-246 856.3 629 67.9
Nitab4.5_0000894g0020 Nicotiana tabacum HOM05D002762 ORTHO05D008831 5.5e-246 854.4 603 67.3
Lj6A665G69 Lonicera japonica HOM05D002762 ORTHO05D008831 3.6e-245 851.7 663 64.3
PSO210G2175 Papaver somniferum HOM05D002762 ORTHO05D008831 3.0e-244 848.6 625 66.1
Eucgr.F00974 Eucalyptus grandis HOM05D002762 ORTHO05D008831 1.5e-243 846.3 592 70.1
EL10Ac8g18297 Beta vulgaris HOM05D002762 ORTHO05D008831 3.4e-243 845.1 628 65.1
Sed0011257 Sechium edule HOM05D002762 ORTHO05D008831 1.3e-242 843.2 627 67.9
AT2G20790 Arabidopsis thaliana HOM05D002762 ORTHO05D008831 3.7e-242 841.6 622 66.4
AL3G53900 Arabidopsis lyrata HOM05D002762 ORTHO05D008831 4.9e-242 841.3 622 65.9
Oeu035631.1 Olea europaea HOM05D002762 ORTHO05D008831 6.3e-242 840.9 599 67.9
PSO832G0886 Papaver somniferum HOM05D002762 ORTHO05D008831 8.3e-242 840.5 625 65.6
HanXRQChr07g0192681 Helianthus annuus HOM05D002762 ORTHO05D008831 1.8e-241 839.3 621 66.7
CARHR111460 Cardamine hirsuta HOM05D002762 ORTHO05D008831 2.4e-241 839.0 623 67.6
Aa31LG8G17700 Aethionema arabicum HOM05D002762 ORTHO05D008831 7.7e-240 833.9 627 65.2
Lsat_1_v5_gn_6_14820 Lactuca sativa HOM05D002762 ORTHO05D008831 2.3e-239 832.4 619 65.8
Sp6g27240 Schrenkiella parvula HOM05D002762 ORTHO05D008831 3.6e-237 825.1 631 65.5
Thhalv10003762m.g Eutrema salsugineum HOM05D002762 ORTHO05D008831 6.8e-236 820.8 624 65.2
C03p09290 Brassica napus HOM05D002762 ORTHO05D008831 5.4e-233 811.2 623 63.7
BolC3t13425H Brassica oleracea HOM05D002762 ORTHO05D008831 1.6e-232 809.7 623 63.9
A03p08030 Brassica napus HOM05D002762 ORTHO05D008831 7.8e-232 807.4 625 63.7
BraA03t10129Z Brassica rapa HOM05D002762 ORTHO05D008831 7.8e-232 807.4 625 63.7
ECA233G1162 Erigeron canadensis HOM05D002762 ORTHO05D008831 3.9e-231 805.1 616 63.5
HPP92_018399 Vanilla planifolia HOM05D002762 ORTHO05D008831 1.9e-230 802.7 631 63.7
CDE11G0719 Ceratophyllum demersum HOM05D002762 ORTHO05D008831 7.3e-230 800.8 628 63.7
Nitab4.5_0000059g0110 Nicotiana tabacum HOM05D002762 ORTHO05D008831 8.0e-229 797.3 568 66.4
AUR62021313 Chenopodium quinoa HOM05D002762 ORTHO05D008831 4.0e-228 795.0 589 66.0
Peaxi162Scf00095g00610 Petunia axillaris HOM05D002762 ORTHO05D008831 1.2e-227 793.5 583 65.2
Sed0022901 Sechium edule HOM05D002762 ORTHO05D008831 5.8e-227 791.2 627 65.4
Carub.0003s3536 Capsella rubella HOM05D002762 ORTHO05D008831 5.2e-220 768.1 562 66.5
Prupe.1G147800 Prunus persica HOM05D002762 ORTHO05D008831 4.4e-219 765.0 629 61.4
Zm00001eb410820 Zea mays HOM05D002762 ORTHO05D008831 4.6e-216 755.0 622 60.0
unitig_899.g14405 Utricularia gibba HOM05D002762 ORTHO05D008831 5.2e-212 741.5 591 59.6
MELO3C021387.2 Cucumis melo HOM05D002762 ORTHO05D008831 2.4e-193 679.5 455 74.3
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 6.9e-188 661.4 440 73.0
SMO115G0172 Selaginella moellendorffii HOM05D002762 ORTHO05D008831 1.8e-183 646.7 621 52.3
SEGI_30175 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.5e-179 633.6 486 63.4
Ah.09g229990 Amaranthus hybridus HOM05D002762 ORTHO05D008831 4.2e-177 625.5 447 67.3
Mapoly0055s0097 Marchantia polymorpha HOM05D002762 ORTHO05D008831 1.5e-174 617.1 638 49.7
Nn1g08335 Nelumbo nucifera HOM05D002762 ORTHO05D008831 1.8e-172 610.1 416 71.6
Cfa015544 Carpinus fangiana HOM05D002762 ORTHO05D008831 6.9e-164 581.6 398 73.1
AagrBONN_evm.TU.Sc2ySwM_368.1411 Anthoceros agrestis HOM05D002762 ORTHO05D008831 6.7e-151 538.5 595 47.2
Eucgr.B01191 Eucalyptus grandis HOM05D002762 ORTHO05D008831 4.1e-148 529.3 415 64.1
Pp3c2_12250 Physcomitrium patens HOM05D002762 ORTHO05D008831 4.1e-148 529.3 619 45.1
SEGI_25743 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 5.5e-145 518.8 399 63.7
Cpa.g.sc16.61 Carica papaya HOM05D002762 ORTHO05D008831 2.0e-126 457.2 604 44.0
MD13G1179200 Malus domestica HOM05D002762 ORTHO05D008831 1.8e-124 450.7 420 60.2
CBR_g19730 Chara braunii HOM05D002762 ORTHO05D008831 1.4e-111 407.9 764 34.0
Actinidia23461 Actinidia chinensis HOM05D002762 ORTHO05D008831 3.9e-98 363.2 266 67.7
BcaB01g05249 Brassica carinata HOM05D002762 ORTHO05D008831 1.0e-50 205.7 174 58.6
Os12g0528300 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D008831 2.5e-44 184.5 166 57.8
MD12G1098700 Malus domestica HOM05D002762 ORTHO05D008831 1.0e-42 179.1 163 59.5
MD12G1098800 Malus domestica HOM05D002762 ORTHO05D008831 2.3e-42 177.9 211 44.1
SEGI_28752 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 3.3e-41 174.1 152 55.9
Actinidia23460 Actinidia chinensis HOM05D002762 ORTHO05D030920 5.2e-34 150.2 82 82.9
VMungo1215G0498 Vigna mungo HOM05D002762 ORTHO05D008831 9.1e-31 139.4 203 43.3
FAN17G1900 Fragaria x ananassa HOM05D002762 ORTHO05D030920 2.2e-16 91.7 57 75.4
Glyma.07G254400 Glycine max HOM05D002762 ORTHO05D004643 6.5e-13 80.1 47 80.9
COL.COLO4_28661 Corchorus olitorius HOM05D002762 ORTHO05D008831 7.2e-12 76.6 88 48.9
TWI09G1537 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 3.0e-10 71.2 40 80.0
MD13G1179000 Malus domestica HOM05D002762 ORTHO05D030920 8.9e-10 69.7 39 74.4


User provided reference genes

Program Settings