Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 1.7e-64 249.2 128 100.0
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 5.9e-25 117.9 114 59.6
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 2.3e-21 105.9 115 55.7
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 9.7e-20 100.5 119 52.9
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 7.0e-18 94.4 109 49.5
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 1.4e-13 80.1 115 45.2
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 2.3e-13 79.3 117 44.4
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 4.0e-13 78.6 117 43.6
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 6.8e-13 77.8 117 43.6
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.2e-12 77.0 114 43.0
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 1.5e-12 76.6 113 42.5
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 2.0e-12 76.3 113 44.2
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 4.4e-12 75.1 113 43.4
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 5.7e-12 74.7 113 42.5
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 5.7e-12 74.7 113 42.5
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 5.7e-12 74.7 113 42.5
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 1.3e-11 73.6 109 43.1
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.7e-11 73.2 117 42.7
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 2.2e-11 72.8 117 40.2
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 2.2e-11 72.8 55 61.8
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 2.2e-11 72.8 113 41.6
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 4.8e-11 71.6 118 41.5
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 6.3e-11 71.2 117 43.6
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 6.3e-11 71.2 108 43.5
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 8.3e-11 70.9 106 39.6
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 8.3e-11 70.9 106 43.4
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 1.1e-10 70.5 113 39.8
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 1.4e-10 70.1 113 42.5
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 1.4e-10 70.1 115 40.0
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 2.4e-10 69.3 113 40.7
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 3.1e-10 68.9 115 35.7
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 4.1e-10 68.6 111 37.8
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 4.1e-10 68.6 105 41.0
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.1e-10 68.6 106 38.7
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 5.4e-10 68.2 106 37.7
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 5.4e-10 68.2 62 54.8
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 5.4e-10 68.2 109 42.2
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 7.0e-10 67.8 115 39.1
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 7.0e-10 67.8 106 41.5
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 9.1e-10 67.4 117 38.5
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 9.1e-10 67.4 109 41.3
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 1.2e-09 67.0 55 54.5
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 2.0e-09 66.2 113 38.1
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.0e-09 66.2 113 38.1
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 2.0e-09 66.2 108 41.7
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 2.0e-09 66.2 105 38.1
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 3.5e-09 65.5 113 38.1
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 7.7e-09 64.3 50 64.0
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 7.7e-09 64.3 113 39.8
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 7.7e-09 64.3 113 39.8
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 7.7e-09 64.3 113 39.8
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 7.7e-09 64.3 113 39.8
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 7.7e-09 64.3 113 38.9
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 7.7e-09 64.3 109 38.5
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 7.7e-09 64.3 119 37.8
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 1.3e-08 63.5 113 37.2
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.3e-08 63.5 113 37.2
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 1.3e-08 63.5 67 49.3
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 2.2e-08 62.8 109 38.5
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 2.2e-08 62.8 105 36.2
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 2.9e-08 62.4 113 38.9
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 2.9e-08 62.4 113 36.3
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.1e-07 60.5 113 34.5
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.5e-07 60.1 57 50.9
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.5e-07 60.1 113 34.5
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 2.5e-07 59.3 113 38.1
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 2.5e-07 59.3 55 50.9
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 4.2e-07 58.5 56 57.1
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 4.2e-07 58.5 61 54.1
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 9.4e-07 57.4 47 59.6
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.2e-06 57.0 52 55.8
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 1.2e-06 57.0 56 51.8
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.2e-06 57.0 56 51.8
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.6e-06 56.6 118 37.3
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 2.1e-06 56.2 47 61.7
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 2.1e-06 56.2 52 53.8
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 2.7e-06 55.8 51 60.8
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 2.7e-06 55.8 49 53.1
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 3.6e-06 55.5 52 55.8
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 4.7e-06 55.1 59 42.4


User provided reference genes

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