Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27990 Trifolium pratense HOM05D000042 ORTHO05D000028 2.8e-24 114.4 56 100.0
Medtr2g017865 Medicago truncatula HOM05D000042 ORTHO05D000028 3.3e-20 100.9 55 94.5
Psat1g193120 Pisum sativum HOM05D000042 ORTHO05D000028 7.3e-20 99.8 54 92.6
Glyma.13G223300 Glycine max HOM05D000042 ORTHO05D000028 3.4e-17 90.9 54 85.2
TPR.G4512 Trifolium pratense HOM05D000042 ORTHO05D000028 4.4e-17 90.5 49 89.8
Lalb_Chr15g0086541 Lupinus albus HOM05D000042 ORTHO05D000028 8.3e-16 86.3 53 83.0
Glyma.15G088600 Glycine max HOM05D000042 ORTHO05D000028 1.1e-15 85.9 54 77.8
VMungo0540G1493 Vigna mungo HOM05D000042 ORTHO05D000028 1.9e-15 85.1 54 81.5
Lalb_Chr18g0054971 Lupinus albus HOM05D000042 ORTHO05D000028 3.5e-14 80.9 53 77.4
Phvul.006G169600 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 6.0e-14 80.1 54 79.6
Eucgr.E02863 Eucalyptus grandis HOM05D000042 ORTHO05D000028 7.8e-14 79.7 53 75.5
Lj6g0014768 Lotus japonicus HOM05D000042 ORTHO05D000028 7.8e-14 79.7 55 81.8
TWI09G0262 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 7.8e-14 79.7 56 71.4
Haze_05446 Corylus avellana HOM05D000042 ORTHO05D000028 1.3e-13 79.0 56 71.4
Potri.011G075800 Populus trichocarpa HOM05D000042 ORTHO05D000028 1.3e-13 79.0 54 74.1
arahy.Tifrunner.gnm1.ann1.LB8X36 Arachis hypogaea HOM05D000042 ORTHO05D000028 1.7e-13 78.6 58 81.0
Cfa001063 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.7e-13 78.6 56 71.4
Lalb_Chr07g0186161 Lupinus albus HOM05D000042 ORTHO05D000028 1.7e-13 78.6 54 77.8
Manes.17G062000 Manihot esculenta HOM05D000042 ORTHO05D000028 1.7e-13 78.6 54 75.9
TWI53G0650 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 3.0e-13 77.8 56 69.6
arahy.Tifrunner.gnm1.ann1.AS063A Arachis hypogaea HOM05D000042 ORTHO05D000028 3.9e-13 77.4 58 79.3
VMungo0251G0228 Vigna mungo HOM05D000042 ORTHO05D000028 5.0e-13 77.0 54 74.1
C01p13000 Brassica napus HOM05D000042 ORTHO05D000028 6.6e-13 76.6 52 73.1
CiPaw.09G133500 Carya illinoinensis HOM05D000042 ORTHO05D000028 6.6e-13 76.6 54 72.2
Lj4g0011484 Lotus japonicus HOM05D000042 ORTHO05D000028 1.5e-12 75.5 53 73.6
BcaNung04027 Brassica carinata HOM05D000042 ORTHO05D000028 1.9e-12 75.1 52 71.2
A01p10980 Brassica napus HOM05D000042 ORTHO05D000028 1.9e-12 75.1 52 71.2
BolC1t01273H Brassica oleracea HOM05D000042 ORTHO05D000028 1.9e-12 75.1 52 71.2
BraA01t01045Z Brassica rapa HOM05D000042 ORTHO05D000028 1.9e-12 75.1 52 71.2
Manes.15G115500 Manihot esculenta HOM05D000042 ORTHO05D000028 2.5e-12 74.7 53 71.7
Phvul.002G243200 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 2.5e-12 74.7 54 72.2
QL05p052466 Quercus lobata HOM05D000042 ORTHO05D000028 2.5e-12 74.7 54 72.2
Thecc.06G160600 Theobroma cacao HOM05D000042 ORTHO05D000028 2.5e-12 74.7 54 70.4
Thhalv10026567m.g Eutrema salsugineum HOM05D000042 ORTHO05D000028 4.3e-12 73.9 52 69.2
Sp7g17670 Schrenkiella parvula HOM05D000042 ORTHO05D000028 4.3e-12 73.9 52 69.2
Duzib160G0496 Durio zibethinus HOM05D000042 ORTHO05D000028 7.3e-12 73.2 54 70.4
GSVIVG01021303001 Vitis vinifera HOM05D000042 ORTHO05D000028 7.3e-12 73.2 54 70.4
Prupe.4G070500 Prunus persica HOM05D000042 ORTHO05D000028 9.5e-12 72.8 54 70.4
AT4G18960 Arabidopsis thaliana HOM05D000042 ORTHO05D000028 1.6e-11 72.0 52 65.4
BcaC01g00584 Brassica carinata HOM05D000042 ORTHO05D000028 1.6e-11 72.0 52 67.3
C03p81630 Brassica napus HOM05D000042 ORTHO05D000028 1.6e-11 72.0 52 67.3
Carub.0007s2222 Capsella rubella HOM05D000042 ORTHO05D000028 1.6e-11 72.0 52 65.4
Duzib192G0657 Durio zibethinus HOM05D000042 ORTHO05D000028 1.6e-11 72.0 54 66.7
AL7G35210 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 2.1e-11 71.6 52 65.4
CARHR225900 Cardamine hirsuta HOM05D000042 ORTHO05D000028 2.1e-11 71.6 52 65.4
Medtr8g087860 Medicago truncatula HOM05D000042 ORTHO05D000028 2.8e-11 71.2 53 64.2
Ciclev10016427m.g Citrus clementina HOM05D000042 ORTHO05D000028 3.6e-11 70.9 54 66.7
Potri.004G064300 Populus trichocarpa HOM05D000042 ORTHO05D000028 3.6e-11 70.9 54 64.8
MD10G1271000 Malus domestica HOM05D000042 ORTHO05D000028 4.7e-11 70.5 54 66.7
Aa31LG6G1630 Aethionema arabicum HOM05D000042 ORTHO05D000028 6.2e-11 70.1 53 67.9
Sed0021520 Sechium edule HOM05D000042 ORTHO05D000028 6.2e-11 70.1 55 70.9
MSTRG.14749 Avicennia marina HOM05D000042 ORTHO05D000028 8.0e-11 69.7 56 66.1
Gohir.A10G033100 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.1e-10 69.3 56 66.1
Gorai.N017200 Gossypium raimondii HOM05D000042 ORTHO05D000028 1.1e-10 69.3 56 66.1
Oeu021545.4 Olea europaea HOM05D000042 ORTHO05D000028 1.1e-10 69.3 53 67.9
Dinv04546 Davidia involucrata HOM05D000042 ORTHO05D000028 1.4e-10 68.9 52 67.3
Glyma.08G120600 Glycine max HOM05D000042 ORTHO05D000028 1.8e-10 68.6 54 68.5
BcaB04g18513 Brassica carinata HOM05D000042 ORTHO05D000028 2.3e-10 68.2 53 67.9
COL.COLO4_22829 Corchorus olitorius HOM05D000042 ORTHO05D000028 2.3e-10 68.2 55 67.3
Gohir.D10G033800 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.3e-10 68.2 56 64.3
Lsat_1_v5_gn_7_27060 Lactuca sativa HOM05D000042 ORTHO05D000028 2.3e-10 68.2 55 61.8
MD05G1293700 Malus domestica HOM05D000042 ORTHO05D000028 2.3e-10 68.2 55 67.3
CSS0009372 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 3.1e-10 67.8 56 66.1
Gohir.A10G033000 Gossypium hirsutum HOM05D000042 ORTHO05D000028 3.1e-10 67.8 56 64.3
Gohir.D10G033700 Gossypium hirsutum HOM05D000042 ORTHO05D000028 3.1e-10 67.8 56 64.3
MSTRG.7446 Avicennia marina HOM05D000042 ORTHO05D000028 4.0e-10 67.4 53 64.2
ClCG01G024100 Citrullus lanatus HOM05D000042 ORTHO05D000028 4.0e-10 67.4 55 70.9
Gorai.011G035500 Gossypium raimondii HOM05D000042 ORTHO05D000028 4.0e-10 67.4 56 64.3
BolC3t20433H Brassica oleracea HOM05D000042 ORTHO05D000028 6.8e-10 66.6 55 63.6
CsaV3_6G051220 Cucumis sativus L. HOM05D000042 ORTHO05D000028 6.8e-10 66.6 55 69.1
TPR.G6763 Trifolium pratense HOM05D000042 ORTHO05D000028 6.8e-10 66.6 60 58.3
CiPaw.10G098600 Carya illinoinensis HOM05D000042 ORTHO05D000028 8.9e-10 66.2 50 72.0
Cc02_g16110 Coffea canephora HOM05D000042 ORTHO05D000028 8.9e-10 66.2 50 64.0
Atru.chr10.1484 Acer truncatum HOM05D000042 ORTHO05D000028 1.5e-09 65.5 56 58.9
Atru.chr10.1486 Acer truncatum HOM05D000042 ORTHO05D000028 1.5e-09 65.5 56 58.9
MELO3C007181.2 Cucumis melo HOM05D000042 ORTHO05D000028 1.5e-09 65.5 55 67.3
DCAR_031434 Daucus carota HOM05D000042 ORTHO05D000028 1.5e-09 65.5 55 58.2
HanXRQChr16g0519321 Helianthus annuus HOM05D000042 ORTHO05D000028 2.0e-09 65.1 55 60.0
EL10Ac8g19847 Beta vulgaris HOM05D000042 ORTHO05D000028 2.6e-09 64.7 56 57.1
A03p51630 Brassica napus HOM05D000042 ORTHO05D000028 2.6e-09 64.7 46 69.6
BraA03t14253Z Brassica rapa HOM05D000042 ORTHO05D000028 2.6e-09 64.7 46 69.6
AUR62027653 Chenopodium quinoa HOM05D000042 ORTHO05D000028 2.6e-09 64.7 56 57.1
AUR62035850 Chenopodium quinoa HOM05D000042 ORTHO05D000028 2.6e-09 64.7 56 57.1
Nitab4.5_0005138g0050 Nicotiana tabacum HOM05D000042 ORTHO05D000028 2.6e-09 64.7 51 66.7
BcaNung02694 Brassica carinata HOM05D000042 ORTHO05D000028 3.4e-09 64.3 46 69.6
ECA236G1536 Erigeron canadensis HOM05D000042 ORTHO05D000028 3.4e-09 64.3 58 60.3
Glyma.05G163200 Glycine max HOM05D000042 ORTHO05D000028 3.4e-09 64.3 54 64.8
arahy.Tifrunner.gnm1.ann1.153R27 Arachis hypogaea HOM05D000042 ORTHO05D000028 4.4e-09 63.9 34 88.2
arahy.Tifrunner.gnm1.ann1.WP2NBW Arachis hypogaea HOM05D000042 ORTHO05D018494 4.4e-09 63.9 34 88.2
Lj1A1178G69 Lonicera japonica HOM05D000042 ORTHO05D000028 4.4e-09 63.9 50 66.0
RcHm_v2.0_Chr5g0012431 Rosa chinensis HOM05D000042 ORTHO05D000028 4.4e-09 63.9 53 64.2
Sed0004665 Sechium edule HOM05D000042 ORTHO05D000028 4.4e-09 63.9 54 63.0
CANSAT35G0408 Cannabis sativa HOM05D000042 ORTHO05D000028 5.8e-09 63.5 32 96.9
CAN.G411.1 Capsicum annuum HOM05D000042 ORTHO05D000028 5.8e-09 63.5 48 66.7
Sopen02g020720 Solanum pennellii HOM05D000042 ORTHO05D000028 5.8e-09 63.5 49 65.3
PGSC0003DMG400028442 Solanum tuberosum HOM05D000042 ORTHO05D000028 5.8e-09 63.5 48 66.7
FvH4_3g06720 Fragaria vesca HOM05D000042 ORTHO05D000028 7.5e-09 63.2 53 64.2
TAR629G2386 Trochodendron aralioides HOM05D000042 ORTHO05D000028 9.8e-09 62.8 55 61.8
HanXRQChr05g0147261 Helianthus annuus HOM05D000042 ORTHO05D000028 1.3e-08 62.4 55 56.4
Nitab4.5_0007204g0030 Nicotiana tabacum HOM05D000042 ORTHO05D000028 1.7e-08 62.0 51 64.7
TAR627G1125 Trochodendron aralioides HOM05D000042 ORTHO05D000028 1.7e-08 62.0 54 63.0
BolC7t45518H Brassica oleracea HOM05D000042 ORTHO05D000028 2.9e-08 61.2 46 65.2
CSS0031383 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 2.9e-08 61.2 52 65.4
Migut.M00986 Erythranthe guttata HOM05D000042 ORTHO05D000028 2.9e-08 61.2 54 61.1
Hma1.2p1_0336F.1_g129020 Hydrangea macrophylla HOM05D000042 ORTHO05D000028 2.9e-08 61.2 52 63.5
Lsat_1_v5_gn_4_47080 Lactuca sativa HOM05D000042 ORTHO05D000028 2.9e-08 61.2 55 56.4
Manes.02G085501 Manihot esculenta HOM05D000042 ORTHO05D000028 2.9e-08 61.2 56 60.7
Sc05g0006730 Simmondsia chinensis HOM05D000042 ORTHO05D000028 2.9e-08 61.2 57 59.6
Migut.H01398 Erythranthe guttata HOM05D000042 ORTHO05D000028 3.7e-08 60.8 56 58.9
SGA_v2.0_scaffold1G00107 Striga asiatica HOM05D000042 ORTHO05D000028 3.7e-08 60.8 51 64.7
ClCG03G007310 Citrullus lanatus HOM05D000042 ORTHO05D000028 4.9e-08 60.5 46 65.2
Actinidia19467 Actinidia chinensis HOM05D000042 ORTHO05D000028 6.4e-08 60.1 53 60.4
SHI01397 Sapria himalayana HOM05D000042 ORTHO05D000028 8.3e-08 59.7 45 68.9
TWI73G1154 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 8.3e-08 59.7 47 63.8
CAN.G257.130 Capsicum annuum HOM05D000042 ORTHO05D000028 1.4e-07 58.9 49 65.3
DCAR_003963 Daucus carota HOM05D000042 ORTHO05D000028 2.4e-07 58.2 47 63.8
MSTRG.15056 Avicennia marina HOM05D000042 ORTHO05D000028 4.1e-07 57.4 56 50.0
THA.LOC104798468 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 4.1e-07 57.4 50 62.0
FAN11G3557 Fragaria x ananassa HOM05D000042 ORTHO05D000028 5.4e-07 57.0 55 60.0
CsaV3_1G032920 Cucumis sativus L. HOM05D000042 ORTHO05D000028 7.0e-07 56.6 37 73.0
MELO3C002691.2 Cucumis melo HOM05D000042 ORTHO05D000028 9.2e-07 56.2 37 73.0
Oeu004265.3 Olea europaea HOM05D000042 ORTHO05D000028 9.2e-07 56.2 75 46.7
BcaC06g30607 Brassica carinata HOM05D000042 ORTHO05D000028 1.2e-06 55.8 59 52.5
Sabra11G0063000 Salix brachista HOM05D000042 ORTHO05D000028 1.2e-06 55.8 44 63.6
ECA234G3521 Erigeron canadensis HOM05D000042 ORTHO05D000028 1.6e-06 55.5 56 53.6
FAN21G0563 Fragaria x ananassa HOM05D000042 ORTHO05D000028 1.6e-06 55.5 39 76.9
FAN25G1633 Fragaria x ananassa HOM05D000042 ORTHO05D000028 1.6e-06 55.5 58 56.9
FAN16G2818 Fragaria x ananassa HOM05D000042 ORTHO05D000028 2.7e-06 54.7 55 60.0
Nitab4.5_0001121g0240 Nicotiana tabacum HOM05D000042 ORTHO05D000028 2.7e-06 54.7 53 56.6
THA.LOC104806968 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 2.7e-06 54.7 56 53.6
Cpa.g.sc50.73 Carica papaya HOM05D000042 ORTHO05D000028 3.5e-06 54.3 56 57.1
SalBow8G1682 Salvia bowleyana HOM05D000042 ORTHO05D000028 3.5e-06 54.3 48 62.5
TAR626G0241 Trochodendron aralioides HOM05D000042 ORTHO05D000028 3.5e-06 54.3 54 55.6
PSO541G4298 Papaver somniferum HOM05D000042 ORTHO05D000028 6.0e-06 53.5 56 55.4
PSO675G6626 Papaver somniferum HOM05D000042 ORTHO05D000028 6.0e-06 53.5 56 55.4
ATR0602G275 Amborella trichopoda HOM05D000042 ORTHO05D000028 7.8e-06 53.1 45 62.2
Dinv12825 Davidia involucrata HOM05D000042 ORTHO05D000028 7.8e-06 53.1 54 51.9


User provided reference genes

Program Settings