Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 2.5e-215 751.9 390 100.0
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 8.5e-184 647.1 418 81.8
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.9e-175 619.4 421 77.0
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 3.2e-167 592.0 422 73.7
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 3.6e-166 588.6 430 71.6
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 8.8e-165 583.9 425 72.5
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 5.7e-156 554.7 428 68.9
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 1.5e-135 486.9 430 61.2
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 9.5e-135 484.2 430 61.2
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 1.1e-133 480.7 356 67.4
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 6.8e-133 478.0 421 60.6
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 7.6e-132 474.6 425 58.1
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 6.0e-129 464.9 431 57.5
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.1e-127 460.7 424 57.5
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 2.4e-122 443.0 409 60.6
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 6.0e-121 438.3 428 54.7
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 6.9e-117 424.9 405 56.0
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 6.9e-117 424.9 405 54.6
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 9.0e-117 424.5 405 56.0
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 7.6e-116 421.4 405 56.0
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.7e-115 420.2 417 51.6
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 2.2e-115 419.9 405 56.0
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.4e-114 417.2 405 54.6
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.9e-114 416.8 407 53.8
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 7.1e-114 414.8 409 54.0
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.2e-113 414.1 408 53.4
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.5e-113 412.5 407 53.6
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 3.9e-112 409.1 407 52.8
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.5e-111 407.1 415 51.1
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 1.5e-111 407.1 412 51.0
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 9.6e-111 404.4 407 52.3
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.1e-110 403.3 405 51.6
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 6.2e-110 401.7 407 51.8
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 8.1e-110 401.4 410 51.0
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.4e-109 400.6 407 52.3
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 3.1e-109 399.4 396 51.8
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 5.3e-109 398.7 404 51.5
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 5.3e-109 398.7 398 52.8
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.5e-108 397.1 409 52.1
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.6e-108 396.4 407 51.6
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 9.9e-108 394.4 406 52.0
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.9e-106 390.2 415 50.1
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.9e-106 390.2 407 51.6
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 9.3e-106 387.9 416 49.5
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 1.6e-105 387.1 404 50.2
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.5e-105 386.0 407 53.1
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.5e-105 386.0 407 53.1
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 4.6e-105 385.6 410 49.0
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 7.9e-105 384.8 420 48.3
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.0e-104 382.9 382 53.4
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.1e-103 380.9 414 48.3
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 1.9e-103 380.2 418 50.0
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 3.3e-103 379.4 406 49.5
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 3.3e-103 379.4 364 51.4
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 3.7e-102 375.9 390 49.7
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 4.8e-102 375.6 397 50.6
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 2.4e-101 373.2 410 49.0
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.3e-101 372.1 409 49.9
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 1.2e-100 370.9 399 48.4
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-100 370.5 410 49.3
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 5.8e-100 368.6 390 49.5
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 5.8e-100 368.6 400 47.5
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 1.0e-99 367.9 390 49.0
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.3e-99 367.5 396 50.8
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.3e-99 367.5 390 49.0
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.9e-99 366.3 405 48.6
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 3.8e-99 365.9 395 49.6
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 4.9e-99 365.5 362 51.1
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.4e-98 364.0 416 48.8
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.4e-98 364.0 401 48.6
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 9.3e-98 361.3 410 48.0
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.9e-96 355.9 412 49.8
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.1e-95 354.4 379 49.1
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.9e-95 353.6 382 52.1
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 7.4e-95 351.7 403 47.1
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.1e-94 350.1 408 48.8
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 2.1e-94 350.1 414 45.7
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 2.8e-94 349.7 382 50.8
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.8e-94 349.0 408 48.8
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.1e-93 346.3 377 49.1
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.1e-93 346.3 425 45.2
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 6.9e-93 345.1 384 50.3
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.2e-92 344.4 387 49.6
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.5e-92 344.0 387 49.6
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 2.6e-92 343.2 406 46.8
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.5e-92 342.4 390 49.0
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.2e-91 340.1 390 48.7
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.9e-91 339.7 374 48.1
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 5.0e-91 339.0 415 44.8
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 6.5e-91 338.6 415 44.6
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.4e-90 337.4 408 47.3
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.5e-90 336.7 406 46.3
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 5.5e-90 335.5 397 47.4
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.2e-89 334.3 379 48.0
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 3.5e-89 332.8 379 47.8
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 4.6e-89 332.4 362 50.3
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.3e-88 330.9 401 48.4
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 2.3e-88 330.1 403 49.1
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.3e-88 330.1 401 48.1
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.1e-87 327.8 398 46.7
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 9.7e-87 324.7 392 47.7
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.3e-86 324.3 402 47.0
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.6e-86 323.9 349 49.6
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 2.2e-86 323.6 364 49.5
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.7e-86 322.8 402 47.0
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 3.7e-86 322.8 393 47.3
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 9.0e-85 318.2 399 46.9
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.6e-84 316.6 387 46.0
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 7.7e-84 315.1 400 46.2
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 7.7e-84 315.1 392 46.2
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.3e-83 314.3 396 44.2
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 1.7e-83 313.9 395 45.6
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 2.2e-83 313.5 351 47.9
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.9e-83 313.2 400 46.0
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 5.0e-83 312.4 394 43.9
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 8.5e-83 311.6 312 52.9
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 3.2e-82 309.7 390 45.4
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.6e-81 307.4 356 47.2
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.1e-81 307.0 387 45.0
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.1e-81 307.0 373 45.6
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 2.7e-81 306.6 380 45.8
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 3.6e-81 306.2 351 49.0
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 3.6e-81 306.2 393 44.3
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 4.6e-81 305.8 393 44.3
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 4.6e-81 305.8 393 44.3
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.4e-80 304.3 391 45.3
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.4e-80 304.3 392 43.1
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.1e-79 301.2 385 46.5
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 1.1e-79 301.2 421 41.6
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 6.9e-77 292.0 394 44.7
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 4.2e-74 282.7 386 44.8
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 5.5e-74 282.3 307 50.5
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 3.3e-71 273.1 379 41.4
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 8.2e-70 268.5 395 37.0
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.8e-69 267.3 398 36.4
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 5.3e-69 265.8 370 40.5
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 7.7e-68 261.9 386 39.1
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 4.2e-66 256.1 324 45.4
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.1e-65 253.8 325 43.7
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 4.7e-65 252.7 291 47.4
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 1.0e-64 251.5 419 34.8
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.1e-63 248.1 385 40.3
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 2.5e-58 230.3 381 38.6
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.5e-58 230.3 415 37.1
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 4.2e-58 229.6 376 35.1
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.2e-58 228.8 330 35.8
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 6.8e-56 222.2 367 37.9
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 3.7e-54 216.5 399 33.8
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 6.3e-54 215.7 286 42.0
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.4e-53 214.5 268 47.8
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.4e-53 213.8 217 48.8
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 7.2e-50 202.2 114 86.8
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.2e-46 190.7 226 46.0
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 2.0e-44 184.1 339 36.6
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 4.5e-44 183.0 228 46.5
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.8e-41 173.7 174 52.9
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.4e-40 171.4 252 40.5
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 4.4e-39 166.4 179 50.8
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 5.4e-37 159.5 268 37.7
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 1.1e-34 151.8 130 60.8
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 2.5e-34 150.6 189 44.4
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 2.3e-32 144.1 135 54.8
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 1.3e-30 138.3 120 60.0
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 1.1e-29 135.2 117 58.1
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.9e-29 134.4 104 62.5
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 1.7e-27 127.9 312 31.7
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.0e-27 127.1 113 54.9
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 9.5e-26 122.1 262 32.8
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.4e-24 118.2 134 43.3
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.2e-15 88.6 82 54.9
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 1.0e-11 75.5 61 55.7
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.0e-08 63.5 195 28.7
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 1.2e-07 62.0 343 22.7
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 3.4e-07 60.5 340 22.1
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 9.9e-07 58.9 330 23.0
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 1.3e-06 58.5 343 22.4
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 2.2e-06 57.8 339 21.5
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 4.9e-06 56.6 346 23.1
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 6.4e-06 56.2 339 21.5
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 6.4e-06 56.2 346 22.8
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 8.4e-06 55.8 340 22.1
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 8.4e-06 55.8 333 23.7


User provided reference genes

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