Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 2386.3 1121 100.0
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 2239.2 1117 92.9
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 2198.3 1117 91.5
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 2197.5 1121 90.9
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 2105.9 1071 91.6
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 2063.5 1120 85.0
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 2048.1 1120 84.0
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 2032.7 1117 84.2
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 2017.7 1123 82.7
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 2010.7 1115 83.0
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1954.9 1121 80.0
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1954.9 1121 79.9
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1815.4 1110 73.4
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1783.5 1118 72.4
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1777.3 1113 71.9
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1771.5 1115 72.2
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1770.0 1113 72.2
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1765.4 1113 71.3
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1765.0 1113 72.4
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1763.4 1113 71.3
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1762.3 1113 71.9
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1759.2 1113 71.9
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1758.0 1113 71.2
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1758.0 1115 72.8
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1751.5 1113 71.4
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1733.8 1124 70.0
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1731.8 1113 70.5
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1722.2 1110 70.0
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1716.4 1113 70.0
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1713.0 1111 69.5
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1711.0 1114 70.0
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1710.3 1111 69.8
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1709.5 1112 69.9
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1708.0 1114 70.2
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1706.4 1114 69.9
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1705.3 1074 72.0
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1699.1 1119 69.3
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1697.9 1114 69.7
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1687.5 1111 68.4
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1687.2 1066 71.1
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1676.8 1105 69.2
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1674.8 1110 67.7
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1674.4 1118 68.4
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1670.6 1095 68.8
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1667.9 1126 67.9
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1665.2 1109 68.3
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1665.2 1109 68.2
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1661.0 1118 68.5
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1660.6 1102 68.1
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1659.8 1110 66.9
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1656.7 1114 68.6
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1655.2 1109 67.4
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1653.6 1109 67.4
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1114 68.1
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1122 67.5
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1650.6 1104 67.0
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1649.8 1110 67.4
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1649.4 1110 66.8
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1648.3 1110 67.2
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1647.9 1114 67.0
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1647.1 1100 67.6
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1646.3 1102 67.7
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1646.3 1104 67.3
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1643.6 1114 67.1
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1641.3 1226 63.5
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1638.6 1112 68.4
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1634.0 1102 67.0
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1632.8 1111 66.9
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1629.0 1098 67.7
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1627.1 989 74.6
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1620.9 1114 66.1
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1619.8 1096 67.1
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1616.3 1107 66.3
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1613.6 1098 67.4
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1609.3 1095 66.8
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1596.3 1052 68.9
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1593.9 1125 64.6
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1588.5 1111 65.7
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1588.5 1128 65.9
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1581.2 1105 66.3
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1565.8 1125 63.6
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1565.1 1111 63.5
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1551.2 1130 63.2
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1481.1 1074 62.2
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1480.7 1165 61.0
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1471.1 1000 67.8
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1404.4 898 72.3
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1389.0 916 68.6
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1283.9 1133 53.3
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1268.1 1117 53.3
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1261.1 832 69.0
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1251.1 1039 57.1
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1242.3 1114 53.0
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1239.2 833 67.3
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1185.2 749 70.4
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1160.2 1118 49.9
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1139.0 739 68.6
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1118.6 761 66.6
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1081.6 665 73.5
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 6.9e-303 1044.3 1129 47.0
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.7e-285 986.5 691 65.8
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 6.3e-248 861.7 756 56.6
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 6.3e-232 808.5 498 73.7
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.6e-219 767.3 541 66.0
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 4.0e-218 762.7 541 66.0
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.8e-210 737.3 568 59.5
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.2e-169 601.7 1505 29.8
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 3.2e-151 540.4 383 65.0
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 6.1e-150 536.2 602 46.3
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 5.0e-136 490.0 282 78.0
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.4e-114 418.7 240 77.1
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.3e-112 412.1 1110 28.4
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 5.8e-108 396.7 588 41.0
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.0e-105 388.3 273 67.4
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 1.1e-90 339.3 196 75.0
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 6.4e-83 313.5 202 69.8
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.1e-82 312.8 259 56.4
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 7.3e-79 300.1 174 77.6
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.2e-74 284.6 208 63.0
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 6.2e-62 243.8 157 66.9
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 1.1e-58 233.0 167 66.5
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.5e-55 222.6 209 50.2
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 8.2e-54 216.9 130 69.2
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 8.2e-46 190.3 116 71.6
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 1.4e-40 172.9 123 65.0
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.5e-36 159.5 132 53.0
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.7e-33 147.9 105 58.1
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 6.1e-33 147.5 192 41.7
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 1.1e-31 143.3 178 43.8
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 4.4e-31 141.4 81 74.1
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.7e-30 138.3 85 69.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 5.3e-29 134.4 193 39.4
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.6e-28 132.1 138 46.4
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 2.6e-28 132.1 134 47.8
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.6e-28 132.1 75 73.3
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 1.1e-26 126.7 146 47.9
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 1.9e-26 125.9 132 50.8
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 1.0e-24 120.2 108 52.8
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.1e-21 110.2 117 52.1
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.4e-21 109.8 53 88.7
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.5e-18 99.0 100 52.0
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 2.1e-17 95.9 66 59.1
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 4.0e-16 91.7 121 46.3
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.4e-13 82.4 85 49.4
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 5.3e-13 81.3 84 46.4
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 1.6e-12 79.7 44 72.7
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 3.5e-12 78.6 61 59.0
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 2.2e-11 75.9 44 68.2
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 2.9e-11 75.5 44 70.5
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 8.5e-11 73.9 47 66.0
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 8.5e-11 73.9 47 63.8
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 2.8e-06 58.9 94 35.1


User provided reference genes

Program Settings