Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 2.0e-49 198.7 98 100.0
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 4.8e-27 124.4 87 73.6
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 1.1e-26 123.2 93 69.9
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 2.9e-24 115.2 87 70.1
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.1e-23 113.2 66 87.9
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 2.1e-22 109.0 86 67.4
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.7e-19 99.4 81 65.4
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 4.8e-19 97.8 81 64.2
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 1.1e-18 96.7 81 63.0
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 4.1e-18 94.7 51 90.2
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.3e-18 94.4 81 63.0
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.3e-18 94.4 81 63.0
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 7.0e-18 94.0 81 61.7
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.2e-17 93.2 81 60.5
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.2e-17 93.2 81 60.5
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.6e-17 92.8 86 59.3
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 2.0e-17 92.4 81 63.0
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 4.5e-17 91.3 81 61.7
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 5.9e-17 90.9 81 60.5
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.9e-17 90.9 85 61.2
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 3.8e-16 88.2 81 59.3
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 3.8e-16 88.2 81 60.5
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 5.0e-16 87.8 81 58.0
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 5.0e-16 87.8 87 56.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 6.5e-16 87.4 81 59.3
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.1e-15 86.7 81 58.0
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 1.1e-15 86.7 81 58.0
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.5e-15 86.3 87 56.3
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.5e-15 85.5 84 59.5
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 3.2e-15 85.1 81 56.8
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 5.5e-15 84.3 81 58.0
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 7.2e-15 84.0 87 56.3
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 7.2e-15 84.0 82 58.5
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 7.2e-15 84.0 81 58.0
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 9.4e-15 83.6 81 58.0
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 9.4e-15 83.6 81 54.3
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 9.4e-15 83.6 81 56.8
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 2.1e-14 82.4 85 56.5
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 2.1e-14 82.4 81 53.1
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 2.1e-14 82.4 81 55.6
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.6e-14 81.6 81 53.1
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 3.6e-14 81.6 81 56.8
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.6e-14 81.6 81 56.8
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 3.6e-14 81.6 87 52.9
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 4.7e-14 81.3 87 54.0
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 4.7e-14 81.3 82 56.1
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 6.1e-14 80.9 81 55.6
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.1e-14 80.9 81 55.6
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.1e-14 80.9 81 55.6
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 6.1e-14 80.9 87 52.9
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 6.1e-14 80.9 83 56.6
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 8.0e-14 80.5 81 53.1
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.0e-13 80.1 59 66.1
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.4e-13 79.7 81 55.6
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.4e-13 79.7 87 51.7
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.8e-13 79.3 90 47.8
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.8e-13 79.3 81 50.6
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 2.3e-13 79.0 81 53.1
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 3.0e-13 78.6 87 52.9
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 4.0e-13 78.2 81 54.3
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 4.0e-13 78.2 81 54.3
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 4.0e-13 78.2 83 55.4
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 5.2e-13 77.8 81 51.9
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 5.2e-13 77.8 71 59.2
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 5.2e-13 77.8 81 53.1
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.2e-13 77.8 81 51.9
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 6.8e-13 77.4 81 51.9
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 8.8e-13 77.0 81 53.1
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 8.8e-13 77.0 81 53.1
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.2e-12 76.6 87 49.4
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.2e-12 76.6 81 51.9
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.2e-12 76.6 81 49.4
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.5e-12 76.3 66 59.1
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.5e-12 76.3 81 51.9
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.5e-12 76.3 81 50.6
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 2.0e-12 75.9 87 49.4
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 2.0e-12 75.9 82 50.0
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 2.0e-12 75.9 82 50.0
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 2.0e-12 75.9 85 54.1
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.0e-12 75.9 89 48.3
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 2.6e-12 75.5 66 57.6
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.6e-12 75.5 81 51.9
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 3.4e-12 75.1 61 63.9
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 3.4e-12 75.1 66 57.6
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.4e-12 75.1 66 57.6
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 5.7e-12 74.3 62 61.3
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 5.7e-12 74.3 71 57.7
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 7.5e-12 73.9 66 56.1
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 7.5e-12 73.9 66 56.1
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 9.8e-12 73.6 81 49.4
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.3e-11 73.2 83 48.2
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.7e-11 72.8 81 49.4
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.7e-11 72.8 81 49.4
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 2.2e-11 72.4 69 52.2
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 8.3e-11 70.5 84 44.0
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 8.3e-11 70.5 87 48.3
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 2.4e-10 68.9 81 50.6
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.1e-10 68.6 82 50.0
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.1e-10 68.6 102 42.2
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.1e-10 68.6 102 42.2
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 1.2e-09 66.6 116 40.5
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.6e-09 66.2 71 49.3
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 2.7e-09 65.5 67 47.8
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 2.7e-09 65.5 79 49.4
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 4.5e-09 64.7 87 43.7
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 1.3e-08 63.2 39 71.8
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 2.2e-08 62.4 67 53.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.8e-08 61.6 83 45.8
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 5.0e-08 61.2 90 44.4
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 6.5e-08 60.8 90 43.3
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 6.5e-08 60.8 89 40.4
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.9e-07 59.3 34 79.4
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 2.5e-07 58.9 67 52.2
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 3.2e-07 58.5 41 73.2
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.2e-06 56.6 81 40.7


User provided reference genes

Program Settings