Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 8.5e-283 976.9 711 100.0
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 1.5e-109 401.4 741 53.8
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.4e-107 394.0 734 44.0
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.2e-82 312.0 522 43.1
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 1.0e-81 308.9 789 46.6
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 3.2e-72 277.3 397 44.3
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 5.5e-72 276.6 418 43.1
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 1.0e-70 272.3 376 46.5
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 3.9e-70 270.4 393 43.8
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 4.8e-68 263.5 431 42.5
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 5.9e-66 256.5 384 42.4
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 5.5e-64 250.0 372 45.7
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 2.7e-63 247.7 393 44.8
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 4.7e-63 246.9 378 48.1
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 1.8e-62 245.0 342 45.9
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 2.2e-60 238.0 369 42.8
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 2.8e-60 237.7 399 43.6
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 2.0e-58 231.5 366 44.3
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 3.5e-58 230.7 397 43.1
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 1.7e-57 228.4 360 41.9
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.2e-57 228.0 359 42.6
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 8.5e-57 226.1 373 42.6
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.5e-56 223.4 394 41.1
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.5e-56 223.4 394 41.1
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 5.5e-56 223.4 334 46.1
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 7.2e-56 223.0 402 40.3
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.6e-55 221.9 390 41.3
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 2.7e-55 221.1 405 38.5
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 6.1e-55 219.9 401 39.4
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 6.1e-55 219.9 432 38.4
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 8.0e-55 219.5 396 42.4
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.0e-54 219.2 410 39.0
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.0e-54 219.2 380 40.5
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 3.0e-54 217.6 380 42.1
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.4e-53 214.2 394 41.1
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 3.4e-53 214.2 393 40.2
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 5.7e-53 213.4 392 41.1
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 5.7e-53 213.4 337 41.5
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 9.8e-53 212.6 409 39.6
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 9.8e-53 212.6 393 40.2
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 2.2e-52 211.5 394 40.9
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.8e-52 211.1 395 41.5
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.8e-52 211.1 387 40.3
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 6.3e-52 209.9 417 36.9
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 4.1e-51 207.2 413 38.5
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 7.0e-51 206.5 417 37.2
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 9.1e-51 206.1 416 42.5
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 9.1e-51 206.1 226 53.1
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 1.6e-50 205.3 410 37.3
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 2.0e-50 204.9 403 37.7
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 3.5e-50 204.1 392 39.5
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 3.5e-50 204.1 368 39.1
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 4.5e-50 203.8 424 38.4
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.0e-49 202.6 394 40.1
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 2.9e-49 201.1 564 36.0
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 2.9e-49 201.1 419 38.2
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 2.9e-49 201.1 209 54.1
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 6.5e-49 199.9 350 41.7
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.5e-48 198.7 364 47.3
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.5e-48 198.7 192 59.4
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 1.5e-48 198.7 365 40.5
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.9e-48 198.4 393 38.7
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.9e-48 198.4 393 38.7
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.5e-48 198.0 205 52.7
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 4.2e-48 197.2 384 40.1
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 7.2e-48 196.4 415 40.2
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 1.2e-47 195.7 421 39.0
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 2.1e-47 194.9 356 41.3
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 4.7e-47 193.7 387 38.5
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 6.1e-47 193.4 194 57.2
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 8.0e-47 193.0 239 47.7
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 1.4e-46 192.2 393 37.2
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 3.0e-46 191.0 190 53.2
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 4.0e-46 190.7 239 47.7
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 5.2e-46 190.3 174 58.0
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 5.2e-46 190.3 410 37.1
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.2e-45 189.1 367 38.4
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 2.6e-45 188.0 195 54.4
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.6e-45 188.0 420 36.2
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 3.4e-45 187.6 387 38.0
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 3.4e-45 187.6 416 37.3
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 5.7e-45 186.8 423 36.4
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 7.5e-45 186.4 187 51.3
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 9.8e-45 186.0 366 38.3
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.7e-44 185.3 184 54.3
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 1.7e-44 185.3 213 46.5
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.8e-44 184.5 389 36.2
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 3.7e-44 184.1 417 37.6
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 4.9e-44 183.7 194 54.1
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 6.3e-44 183.3 231 48.1
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 8.3e-44 183.0 176 56.8
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 8.3e-44 183.0 199 52.8
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 8.3e-44 183.0 339 38.9
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.4e-43 182.2 397 38.8
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 2.4e-43 181.4 194 53.1
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 4.1e-43 180.6 393 37.4
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 7.0e-43 179.9 235 46.0
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 7.0e-43 179.9 199 50.8
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 9.2e-43 179.5 144 63.2
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.2e-42 179.1 200 50.5
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.6e-42 178.7 144 61.1
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.6e-42 178.7 195 51.3
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.0e-42 178.3 212 47.6
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.0e-42 178.3 209 49.8
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 2.0e-42 178.3 200 50.5
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 2.0e-42 178.3 213 48.4
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 3.5e-42 177.6 419 37.0
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 4.5e-42 177.2 394 36.0
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 5.9e-42 176.8 222 48.6
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 5.9e-42 176.8 219 47.9
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 7.8e-42 176.4 355 36.6
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.0e-41 176.0 366 38.3
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 1.7e-41 175.3 178 55.6
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.3e-41 174.9 324 38.6
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 3.8e-41 174.1 404 34.9
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 5.0e-41 173.7 398 35.7
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 8.6e-41 172.9 404 34.4
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 8.6e-41 172.9 404 34.4
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.5e-40 172.2 172 52.9
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 3.3e-40 171.0 192 50.0
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 7.3e-40 169.9 192 50.5
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 1.2e-39 169.1 374 35.8
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 8.0e-39 166.4 161 54.7
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 5.2e-38 163.7 159 54.1
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.5e-37 162.2 195 48.7
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.4e-37 161.0 172 50.6
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 2.2e-36 158.3 399 33.1
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 2.2e-36 158.3 236 41.5
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 4.1e-35 154.1 391 33.2
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 5.4e-35 153.7 224 42.9
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 5.0e-33 147.1 365 33.7
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 8.9e-30 136.3 163 47.9
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 5.8e-29 133.7 140 47.9
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 9.2e-27 126.3 177 41.2
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.5e-26 124.4 111 54.1
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 6.6e-25 120.2 139 46.8
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 5.6e-24 117.1 168 40.5
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 3.6e-23 114.4 150 44.7
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 8.1e-23 113.2 169 42.6
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 6.4e-20 103.6 192 40.1
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.6e-18 99.0 132 47.7
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 2.1e-18 98.6 100 55.0
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 3.5e-18 97.8 130 47.7
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 2.2e-12 78.6 88 54.5
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.2e-07 62.8 97 39.2
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 6.2e-07 60.5 180 30.6
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 1.4e-06 59.3 94 41.5
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 3.1e-06 58.2 104 30.8
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 9.0e-06 56.6 107 36.4


User provided reference genes

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