Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 6.0e-283 977.2 657 100.0
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.0e-242 843.6 516 89.9
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 3.0e-242 842.0 512 88.3
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.9e-224 781.6 449 90.4
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.8e-218 761.1 407 94.6
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 6.8e-218 761.1 501 83.0
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 2.7e-214 749.2 502 81.7
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.7e-213 746.5 517 79.1
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 3.0e-213 745.7 528 80.1
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 3.9e-213 745.3 451 83.6
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 5.0e-213 745.0 517 79.1
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 2.3e-202 709.5 446 82.1
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 5.2e-202 708.4 446 81.8
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 2.4e-199 699.5 449 80.2
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 4.2e-191 672.2 510 72.5
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 2.3e-189 666.4 450 75.3
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 3.0e-189 666.0 536 70.0
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 3.9e-189 665.6 444 77.0
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 5.1e-189 665.2 556 69.6
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 6.6e-189 664.8 444 77.3
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 9.6e-188 661.0 445 76.0
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 2.8e-187 659.4 450 76.2
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 6.2e-187 658.3 526 67.7
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.1e-186 657.5 455 74.5
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 2.4e-186 656.4 444 75.5
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.3e-186 655.2 440 75.5
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 6.9e-186 654.8 442 75.8
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 9.0e-186 654.4 442 75.6
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.4e-185 652.5 443 75.2
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 5.8e-185 651.7 453 73.5
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 5.8e-185 651.7 518 71.8
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 4.9e-184 648.7 531 67.0
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.1e-183 647.5 512 71.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.2e-183 645.6 439 74.5
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.6e-182 643.7 511 71.4
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.5e-182 642.5 451 73.6
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 4.6e-182 642.1 532 69.0
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 6.0e-182 641.7 449 74.8
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.3e-181 640.6 511 71.0
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.5e-180 637.1 449 73.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.4e-180 634.8 449 72.6
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 2.1e-179 633.3 516 69.6
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-177 627.5 513 70.2
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.5e-177 627.1 403 78.2
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.5e-177 627.1 452 71.0
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 3.4e-177 625.9 455 71.4
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 7.6e-177 624.8 455 71.2
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 2.2e-176 623.2 505 67.9
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.9e-176 622.9 455 70.5
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 3.8e-176 622.5 456 70.4
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 4.9e-176 622.1 447 71.6
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 3.2e-175 619.4 455 70.5
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 7.1e-175 618.2 459 68.6
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.2e-174 617.5 451 71.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 2.1e-174 616.7 455 71.2
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 2.1e-174 616.7 450 71.1
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.3e-173 614.0 421 73.6
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 5.1e-173 612.1 510 67.3
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 2.5e-172 609.8 458 69.7
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 5.6e-172 608.6 456 69.7
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 9.0e-170 601.3 504 67.3
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.4e-169 599.4 485 65.6
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 7.6e-169 598.2 533 66.0
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.1e-167 594.3 451 66.5
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 4.6e-166 589.0 421 70.5
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 7.9e-166 588.2 432 69.0
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.0e-165 587.8 443 68.8
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 6.7e-165 585.1 427 71.2
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.9e-164 583.6 532 64.1
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.7e-164 582.0 450 68.0
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 3.1e-162 576.2 460 65.9
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 9.0e-162 574.7 524 62.8
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.5e-161 573.9 446 67.3
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 7.6e-161 571.6 434 68.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.3e-160 570.9 455 67.0
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.7e-160 570.5 393 73.8
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.1e-159 567.8 452 67.0
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.1e-159 567.8 522 63.0
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.4e-159 567.4 454 65.2
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 3.2e-159 566.2 452 65.3
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 2.1e-158 563.5 482 64.9
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.0e-157 561.2 456 65.1
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.8e-157 560.5 454 65.4
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 3.0e-157 559.7 516 60.3
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 3.3e-156 556.2 420 68.1
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.1e-154 551.2 529 60.7
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 5.3e-154 548.9 449 63.9
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 3.8e-152 542.7 502 59.0
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.4e-151 540.8 435 64.8
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.6e-150 537.3 451 61.6
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 2.7e-150 536.6 451 63.9
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 3.6e-150 536.2 420 64.8
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 3.6e-150 536.2 510 56.7
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 6.1e-150 535.4 394 67.5
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.8e-149 533.9 468 63.9
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 3.9e-149 532.7 455 63.1
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 4.4e-148 529.3 421 65.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 9.7e-148 528.1 373 69.4
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 1.5e-145 520.8 444 62.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 1.7e-144 517.3 447 60.4
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 1.9e-143 513.8 453 60.7
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.6e-142 509.6 455 60.4
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.4e-141 507.7 455 59.1
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.8e-141 507.3 430 62.6
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.5e-140 504.2 456 59.6
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.5e-136 488.8 420 61.4
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 2.7e-134 483.4 403 61.5
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 7.5e-132 475.3 411 60.1
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.9e-128 463.4 310 76.1
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.2e-124 451.4 442 56.8
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.6e-124 450.3 381 63.0
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.0e-116 424.1 324 63.9
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.7e-115 421.0 403 55.6
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 3.0e-109 400.2 280 71.4
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.3e-107 394.8 356 58.4
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.7e-107 393.3 349 61.9
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 8.3e-107 392.1 389 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 2.4e-106 390.6 388 55.2
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.9e-103 380.9 413 50.4
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.3e-96 357.5 441 49.0
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.0e-88 332.0 213 76.1
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.8e-85 321.2 248 66.9
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 3.4e-84 317.0 426 46.5
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 3.4e-76 290.4 353 47.0
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.9e-75 287.3 191 75.9
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.4e-74 284.3 357 48.2
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 2.3e-72 277.7 173 78.6
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 3.0e-72 277.3 210 69.0
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.1e-69 267.3 454 39.4
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.4e-53 214.5 191 59.2
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.4e-45 188.7 195 52.8
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.3e-43 182.2 166 59.0
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 4.2e-42 177.2 508 30.7
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 1.1e-39 169.1 97 85.6
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 2.5e-39 167.9 97 85.6
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 5.9e-36 156.8 183 56.3
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 1.2e-25 122.5 393 27.7
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 8.8e-24 116.3 95 58.9
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.6e-20 105.5 86 59.3
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 3.5e-20 104.4 354 27.1
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.9e-20 103.6 120 55.0
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.7e-14 85.5 141 58.2
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 4.8e-14 84.0 126 43.7
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 6.3e-14 83.6 161 37.3
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.1e-13 82.8 129 41.1
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.5e-12 77.8 164 36.0
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 3.5e-12 77.8 127 54.3
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 2.5e-10 71.6 44 75.0
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 7.2e-10 70.1 106 40.6
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.6e-09 68.9 126 34.9
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 2.0e-07 62.0 113 38.9
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 2.2e-06 58.5 61 52.5


User provided reference genes

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