Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26857 Trifolium pratense HOM05D004148 ORTHO05D004709 1.0e-23 112.5 53 100.0
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 3.1e-20 100.9 53 86.8
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 1.2e-19 99.0 53 84.9
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 1.7e-18 95.1 53 84.9
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 2.9e-18 94.4 53 83.0
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 3.2e-17 90.9 53 75.5
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 2.3e-15 84.7 53 71.7
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 6.7e-15 83.2 53 73.6
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 8.7e-15 82.8 53 71.7
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 1.1e-14 82.4 53 71.7
arahy.Tifrunner.gnm1.ann1.JMUS5L Arachis hypogaea HOM05D004148 ORTHO05D004709 1.9e-14 81.6 53 69.8
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 1.9e-14 81.6 53 66.0
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.9e-14 81.6 53 67.9
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 1.9e-14 81.6 53 77.4
VMungo1215G1724 Vigna mungo HOM05D004148 ORTHO05D004709 1.9e-14 81.6 53 77.4
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 4.3e-14 80.5 53 66.0
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 5.6e-14 80.1 53 67.9
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 2.1e-13 78.2 53 64.2
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 3.7e-13 77.4 53 66.0
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 3.7e-13 77.4 53 66.0
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 3.7e-13 77.4 53 66.0
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 3.7e-13 77.4 53 77.4
FvH4_3g27030 Fragaria vesca HOM05D004148 ORTHO05D004709 4.8e-13 77.0 53 66.0
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 4.8e-13 77.0 53 66.0
FAN11G3429 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.8e-13 77.0 53 66.0
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 1.1e-12 75.9 53 66.0
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 1.1e-12 75.9 53 62.3
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 2.4e-12 74.7 53 64.2
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 2.4e-12 74.7 53 64.2
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 4.0e-12 73.9 53 62.3
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 9.0e-12 72.8 53 60.4
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 2.0e-11 71.6 53 60.4
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 2.6e-11 71.2 53 56.6
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 4.5e-11 70.5 53 62.3
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 7.6e-11 69.7 53 60.4
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 1.7e-10 68.6 53 58.5
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 1.4e-09 65.5 57 57.9
AUR62001591 Chenopodium quinoa HOM05D004148 ORTHO05D004709 7.1e-09 63.2 53 56.6
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 7.1e-09 63.2 53 60.4
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 1.2e-08 62.4 53 58.5
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 2.1e-08 61.6 53 52.8
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 2.1e-08 61.6 53 50.9
CSS0002631 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 2.1e-08 61.6 53 56.6
CSS0019415 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 2.1e-08 61.6 53 56.6
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 2.1e-08 61.6 53 58.5
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 2.7e-08 61.2 53 54.7
AUR62038878 Chenopodium quinoa HOM05D000413 ORTHO05D004709 3.5e-08 60.8 53 54.7
Eucgr.B03796 Eucalyptus grandis HOM05D004148 ORTHO05D004709 3.5e-08 60.8 53 56.6
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 7.9e-08 59.7 53 54.7
Cpa.g.sc103.96 Carica papaya HOM05D004148 ORTHO05D004709 1.0e-07 59.3 55 63.6
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 1.3e-07 58.9 49 57.1
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 1.3e-07 58.9 53 52.8
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 1.8e-07 58.5 53 52.8
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 2.3e-07 58.2 38 65.8
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 2.3e-07 58.2 53 50.9
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 2.3e-07 58.2 53 58.5
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 2.3e-07 58.2 53 50.9
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 5.1e-07 57.0 53 56.6
Carub.0005s0933 Capsella rubella HOM05D004148 ORTHO05D004709 5.1e-07 57.0 53 50.9
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 6.7e-07 56.6 53 52.8
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 6.7e-07 56.6 38 63.2
CARHR148460 Cardamine hirsuta HOM05D004148 ORTHO05D004709 6.7e-07 56.6 53 50.9
CARHR108680 Cardamine hirsuta HOM05D004148 ORTHO05D004709 8.7e-07 56.2 53 50.9
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 8.7e-07 56.2 53 50.9
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 8.7e-07 56.2 53 50.9
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 1.1e-06 55.8 53 47.2
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 1.9e-06 55.1 53 50.9
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 2.5e-06 54.7 38 57.9
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 2.5e-06 54.7 53 50.9
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 2.5e-06 54.7 53 49.1
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 2.5e-06 54.7 53 49.1
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 2.5e-06 54.7 53 49.1
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 2.5e-06 54.7 53 49.1
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 3.3e-06 54.3 53 52.8
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 4.3e-06 53.9 53 49.1
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 7.4e-06 53.1 53 49.1
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 9.6e-06 52.8 53 49.1


User provided reference genes

Program Settings