Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 3.9e-100 368.2 199 100.0
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 9.3e-86 320.5 192 88.0
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.1e-65 253.8 200 74.5
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.9e-63 245.7 200 72.5
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 2.1e-61 239.6 201 69.2
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 8.8e-60 234.2 196 71.4
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 8.8e-60 234.2 197 71.6
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.6e-59 232.6 201 68.7
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 3.4e-56 222.2 201 69.2
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 1.4e-54 216.9 202 65.3
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 2.7e-53 212.6 202 64.4
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 1.4e-49 200.3 124 87.1
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 9.1e-41 171.0 198 57.1
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 9.1e-41 171.0 142 66.9
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.0e-39 167.5 136 64.7
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 5.0e-39 165.2 196 54.6
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.1e-38 164.1 199 53.8
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.9e-38 163.3 183 53.6
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 5.5e-38 161.8 136 67.6
Medtr0065s0080 Medicago truncatula HOM05D004087 ORTHO05D004787 2.1e-37 159.8 98 82.7
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 6.1e-37 158.3 145 62.1
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 8.0e-37 157.9 154 60.4
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 8.0e-37 157.9 154 60.4
Medtr1g116050 Medicago truncatula HOM05D004087 ORTHO05D004787 3.0e-36 156.0 98 80.6
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 6.8e-36 154.8 126 67.5
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.2e-35 154.1 140 62.9
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 2.0e-35 153.3 101 77.2
Medtr3g040420 Medicago truncatula HOM05D004087 ORTHO05D004787 2.6e-35 152.9 98 79.6
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 7.5e-35 151.4 200 52.5
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 7.5e-35 151.4 125 68.0
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.7e-34 150.2 198 50.5
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 2.2e-34 149.8 127 67.7
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.8e-34 149.4 134 63.4
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.4e-33 147.1 110 68.2
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.8e-33 146.7 132 62.9
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 2.0e-32 143.3 163 55.8
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 4.5e-32 142.1 101 73.3
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 6.5e-31 138.3 148 55.4
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 6.5e-31 138.3 152 55.3
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 8.5e-31 137.9 141 54.6
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.5e-30 136.3 171 50.3
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 9.5e-30 134.4 140 54.3
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.0e-28 131.0 187 48.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 4.0e-28 129.0 125 56.8
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 4.0e-28 129.0 125 56.8
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 5.2e-28 128.6 157 52.2
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 6.8e-28 128.3 93 72.0
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.0e-27 126.7 93 71.0
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 2.0e-27 126.7 153 51.6
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.6e-27 126.3 195 45.6
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 5.7e-27 125.2 87 73.6
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.3e-26 124.0 129 56.6
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 8.3e-26 121.3 95 65.3
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 8.3e-26 121.3 183 44.8
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.4e-25 120.6 175 45.1
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.8e-25 120.2 129 54.3
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 7.0e-25 118.2 127 54.3
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 1.2e-21 107.5 115 60.9
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.2e-21 107.5 192 42.7
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 1.8e-20 103.6 110 49.1
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.3e-20 103.2 106 50.9
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 5.2e-20 102.1 116 48.3
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 6.8e-20 101.7 122 48.4
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 2.6e-19 99.8 96 53.1
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 5.7e-19 98.6 197 41.1
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 7.5e-19 98.2 115 48.7
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 9.8e-19 97.8 92 54.3
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.3e-18 97.4 89 53.9
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.7e-18 97.1 92 54.3
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.7e-18 97.1 116 45.7
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.7e-18 97.1 89 56.2
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.9e-18 96.3 138 40.6
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.9e-18 96.3 115 47.8
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 3.7e-18 95.9 92 53.3
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 3.7e-18 95.9 87 55.2
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 3.7e-18 95.9 100 50.0
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.7e-18 95.9 110 47.3
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 4.9e-18 95.5 90 53.3
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 4.9e-18 95.5 87 52.9
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 4.9e-18 95.5 90 54.4
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.9e-18 95.5 90 54.4
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.9e-18 95.5 90 54.4
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.9e-18 95.5 91 51.6
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 6.4e-18 95.1 89 52.8
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 8.3e-18 94.7 92 52.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 8.3e-18 94.7 90 53.3
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 8.3e-18 94.7 90 53.3
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 8.3e-18 94.7 92 52.2
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 8.3e-18 94.7 90 53.3
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 8.3e-18 94.7 92 52.2
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 8.3e-18 94.7 90 53.3
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 8.3e-18 94.7 90 53.3
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 8.3e-18 94.7 90 53.3
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.3e-18 94.7 90 54.4
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 8.3e-18 94.7 92 52.2
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.1e-17 94.4 177 36.7
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 1.4e-17 94.0 89 51.7
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 1.4e-17 94.0 92 48.9
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.8e-17 93.6 147 41.5
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.8e-17 93.6 92 53.3
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.8e-17 93.6 89 49.4
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.8e-17 93.6 89 49.4
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.8e-17 93.6 161 39.8
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.4e-17 93.2 89 51.7
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.4e-17 93.2 108 47.2
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.4e-17 93.2 146 40.4
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 2.4e-17 93.2 87 54.0
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.2e-17 92.8 129 43.4
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 3.2e-17 92.8 128 42.2
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 4.1e-17 92.4 89 51.7
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 4.1e-17 92.4 87 51.7
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.1e-17 92.4 92 53.3
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 4.1e-17 92.4 116 43.1
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 5.4e-17 92.0 91 50.5
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 5.4e-17 92.0 87 52.9
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 5.4e-17 92.0 102 45.1
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 5.4e-17 92.0 87 49.4
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 5.4e-17 92.0 89 51.7
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 5.4e-17 92.0 112 42.9
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 5.4e-17 92.0 108 43.5
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 7.0e-17 91.7 85 54.1
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 7.0e-17 91.7 146 40.4
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 7.0e-17 91.7 103 46.6
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.0e-16 90.1 89 52.8
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 2.7e-16 89.7 85 50.6
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.7e-16 89.7 159 38.4
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 3.5e-16 89.4 176 36.9
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 3.5e-16 89.4 139 41.0
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 5.9e-16 88.6 176 33.0
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 7.8e-16 88.2 92 47.8
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 7.8e-16 88.2 159 37.7
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 7.8e-16 88.2 161 34.2
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.0e-15 87.8 92 47.8
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 2.3e-15 86.7 110 42.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 3.9e-15 85.9 91 46.2
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 6.6e-15 85.1 126 39.7
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 8.6e-15 84.7 174 40.2
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.1e-14 84.3 195 33.3
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.1e-14 84.3 156 37.8
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.5e-14 84.0 131 38.2
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.5e-14 84.0 183 34.4
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.3e-14 82.8 109 41.3
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 4.7e-13 79.0 74 63.5
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 2.3e-12 76.6 92 48.9
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 2.3e-12 76.6 91 49.5
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 3.1e-12 76.3 82 47.6
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 4.0e-12 75.9 69 58.0
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 6.8e-12 75.1 84 45.2
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.6e-11 73.2 92 52.2
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 7.5e-11 71.6 73 47.9
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.7e-10 70.5 69 49.3
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 2.2e-10 70.1 101 41.6
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.1e-09 67.8 107 35.5
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.9e-09 67.0 111 36.9
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 9.2e-09 64.7 81 45.7
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 9.2e-09 64.7 59 57.6
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.6e-08 63.9 60 56.7
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 1.6e-08 63.9 71 52.1
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.6e-08 63.9 74 45.9
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.6e-08 63.9 120 39.2
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 4.6e-08 62.4 60 53.3
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 4.6e-08 62.4 60 50.0
CSS0038746 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 3.9e-07 59.3 102 44.1
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 5.6e-06 55.5 53 52.8


User provided reference genes

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