Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 1.2e-22 109.4 72 100.0
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 4.6e-19 97.4 71 76.1
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 3.0e-18 94.7 70 81.4
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 4.1e-15 84.3 47 87.2
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 2.6e-14 81.6 67 82.1
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 3.8e-13 77.8 47 78.7
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 5.0e-13 77.4 47 80.9
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 6.5e-13 77.0 47 80.9
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 3.2e-12 74.7 47 78.7
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 1.6e-11 72.4 43 79.1
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 2.1e-11 72.0 47 72.3
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 1.4e-10 69.3 50 72.0
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.8e-10 68.9 42 78.6
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.8e-10 68.9 43 76.7
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 3.9e-10 67.8 50 70.0
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 1.1e-09 66.2 50 68.0
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.5e-09 65.9 50 68.0
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.5e-09 65.9 50 68.0
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.5e-09 65.9 50 68.0
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.5e-09 65.9 50 68.0
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 2.0e-09 65.5 43 72.1
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 2.0e-09 65.5 50 66.0
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.0e-09 65.5 46 67.4
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.5e-09 65.1 46 65.2
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.3e-09 64.7 46 67.4
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 4.3e-09 64.3 50 66.0
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 4.3e-09 64.3 50 66.0
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 4.3e-09 64.3 43 69.8
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 5.7e-09 63.9 50 66.0
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 5.7e-09 63.9 50 66.0
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 5.7e-09 63.9 45 62.2
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 7.4e-09 63.5 47 66.0
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 9.7e-09 63.2 43 69.8
Lalb_Chr20g0107771 Lupinus albus HOM05D007833 ORTHO05D009855 9.7e-09 63.2 47 68.1
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.3e-08 62.8 50 66.0
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.3e-08 62.8 43 69.8
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.7e-08 62.4 47 66.0
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 1.7e-08 62.4 46 65.2
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 2.2e-08 62.0 43 67.4
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.2e-08 62.0 43 69.8
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 2.2e-08 62.0 50 64.0
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 2.8e-08 61.6 43 67.4
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 2.8e-08 61.6 47 68.1
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 2.8e-08 61.6 43 69.8
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 2.8e-08 61.6 43 69.8
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 3.7e-08 61.2 51 60.8
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 3.7e-08 61.2 50 62.0
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 4.8e-08 60.8 46 63.0
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 4.8e-08 60.8 50 64.0
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 6.3e-08 60.5 50 60.0
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 6.3e-08 60.5 43 67.4
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 8.2e-08 60.1 68 50.0
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 8.2e-08 60.1 43 67.4
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 8.2e-08 60.1 50 60.0
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 1.1e-07 59.7 50 62.0
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.1e-07 59.7 44 65.9
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.1e-07 59.7 44 65.9
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.1e-07 59.7 43 65.1
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.1e-07 59.7 43 67.4
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.4e-07 59.3 50 62.0
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 1.4e-07 59.3 43 65.1
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 1.4e-07 59.3 43 65.1
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.4e-07 59.3 66 51.5
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 1.4e-07 59.3 41 65.9
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 1.4e-07 59.3 51 58.8
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.4e-07 59.3 50 62.0
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.8e-07 58.9 67 44.8
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.8e-07 58.9 50 58.0
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 2.4e-07 58.5 43 65.1
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.4e-07 58.5 43 65.1
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 2.4e-07 58.5 43 62.8
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 4.1e-07 57.8 45 60.0
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 4.1e-07 57.8 43 62.8
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 5.3e-07 57.4 50 58.0
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 6.9e-07 57.0 45 57.8
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 9.1e-07 56.6 50 60.0
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 9.1e-07 56.6 43 62.8
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 1.2e-06 56.2 46 56.5
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.5e-06 55.8 43 60.5
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 2.0e-06 55.5 40 65.0
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 2.6e-06 55.1 45 64.4
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 4.5e-06 54.3 43 58.1
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 7.7e-06 53.5 43 58.1


User provided reference genes

Program Settings