Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26312 Trifolium pratense HOM05D009122 ORTHO05D011085 0.0e+00 1087.8 561 100.0
TPR.G39281 Trifolium pratense HOM05D009122 ORTHO05D011085 7.8e-21 106.3 103 47.6
TPR.G35808 Trifolium pratense HOM05D009122 ORTHO05D011085 1.3e-20 105.5 103 47.6
TPR.G39831 Trifolium pratense HOM05D000003 ORTHO05D000004 4.7e-18 97.1 155 38.7
Psat0s2481g0120 Pisum sativum HOM05D009122 ORTHO05D011085 8.3e-15 86.3 152 31.6
Psat7g241280 Pisum sativum HOM05D000003 ORTHO05D000004 3.2e-14 84.3 164 29.3
TPR.G23077 Trifolium pratense HOM05D000108 ORTHO05D001149 1.0e-12 79.3 137 39.4
TPR.G12894 Trifolium pratense HOM05D000003 ORTHO05D000004 1.7e-12 78.6 227 26.4
TPR.G20657 Trifolium pratense HOM05D009122 ORTHO05D011085 2.3e-12 78.2 110 38.2
Medtr1g067630 Medicago truncatula HOM05D000108 ORTHO05D001149 3.9e-12 77.4 140 40.0
Ca_09598_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 9.5e-11 72.8 137 38.0
Psat4g035320 Pisum sativum HOM05D000894 ORTHO05D001833 3.6e-10 70.9 69 46.4
Psat6g068920 Pisum sativum HOM05D000108 ORTHO05D001149 4.7e-10 70.5 143 37.1
VMungo0720G0253 Vigna mungo HOM05D000108 ORTHO05D001149 8.1e-10 69.7 139 37.4
Psat3g048000 Pisum sativum HOM05D000003 ORTHO05D000004 2.3e-09 68.2 119 34.5
AUR62030098 Chenopodium quinoa HOM05D000003 ORTHO05D000004 3.1e-09 67.8 152 26.3
Psat6g031080 Pisum sativum HOM05D009122 ORTHO05D011085 3.1e-09 67.8 67 44.8
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 3.1e-09 67.8 77 44.2
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 4.0e-09 67.4 84 38.1
Glyma.13G133200 Glycine max HOM05D000108 ORTHO05D001149 5.2e-09 67.0 122 40.2
TPR.G35390 Trifolium pratense HOM05D000003 ORTHO05D000004 5.2e-09 67.0 158 26.6
Phvul.007G159100 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 6.8e-09 66.6 139 37.4
Psat4g049280 Pisum sativum HOM05D009122 ORTHO05D011085 6.8e-09 66.6 67 38.8
Psat2g135240 Pisum sativum HOM05D009122 ORTHO05D011085 1.5e-08 65.5 77 42.9
Medtr8g016985 Medicago truncatula HOM05D000003 ORTHO05D000004 2.6e-08 64.7 137 29.9
Psat2g135320 Pisum sativum HOM05D009122 ORTHO05D011085 2.6e-08 64.7 77 42.9
Lj5g0001196 Lotus japonicus HOM05D000108 ORTHO05D001149 4.4e-08 63.9 127 37.8
Glyma.10G045500 Glycine max HOM05D000108 ORTHO05D001149 9.9e-08 62.8 121 39.7
Sed0000666 Sechium edule HOM05D000108 ORTHO05D001149 2.2e-07 61.6 130 33.1
Rhsim06G0236600 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.9e-07 61.2 129 34.9
RhsimUnG0247700 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.9e-07 61.2 129 34.9
arahy.Tifrunner.gnm1.ann1.V9SGYL Arachis hypogaea HOM05D000108 ORTHO05D001149 3.7e-07 60.8 142 35.2
THA.LOC104806586 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 3.7e-07 60.8 114 36.8
Psat2g050880 Pisum sativum HOM05D009122 ORTHO05D011085 4.9e-07 60.5 72 33.3
Psat5g292000 Pisum sativum HOM05D009122 ORTHO05D012377 4.9e-07 60.5 66 37.9
Rhsim05G0187400 Rhododendron simsii HOM05D000108 ORTHO05D001149 4.9e-07 60.5 104 38.5
CARHR132170 Cardamine hirsuta HOM05D000108 ORTHO05D001149 6.4e-07 60.1 104 38.5
MELO3C003101.2 Cucumis melo HOM05D000108 ORTHO05D001149 6.4e-07 60.1 129 30.2
Sed0024726 Sechium edule HOM05D000108 ORTHO05D001149 6.4e-07 60.1 140 30.7
arahy.Tifrunner.gnm1.ann1.V43IMF Arachis hypogaea HOM05D000108 ORTHO05D001149 8.3e-07 59.7 139 35.3
CiPaw.09G187900 Carya illinoinensis HOM05D000108 ORTHO05D001149 1.1e-06 59.3 107 38.3
Psat1g152760 Pisum sativum HOM05D032678 ORTHO05D011085 1.1e-06 59.3 86 29.1
Psat4g029800 Pisum sativum HOM05D000003 ORTHO05D000004 1.4e-06 58.9 171 24.6
QL07p046713 Quercus lobata HOM05D000108 ORTHO05D001149 1.4e-06 58.9 217 26.3
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-06 58.5 195 25.6
PSO339G2129 Papaver somniferum HOM05D000003 ORTHO05D000004 1.9e-06 58.5 140 30.7
AT2G37420 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 2.4e-06 58.2 139 33.8
Dinv35646 Davidia involucrata HOM05D000108 ORTHO05D001149 2.4e-06 58.2 135 34.1
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 2.4e-06 58.2 184 23.9
TPR.G36591 Trifolium pratense HOM05D009122 ORTHO05D011085 2.4e-06 58.2 69 39.1
ATR1152G079 Amborella trichopoda HOM05D000108 ORTHO05D001149 3.2e-06 57.8 137 30.7
PSO063G1456 Papaver somniferum HOM05D000003 ORTHO05D000004 3.2e-06 57.8 138 27.5
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 4.1e-06 57.4 146 32.2
CsaV3_4G024680 Cucumis sativus L. HOM05D000108 ORTHO05D001149 4.1e-06 57.4 130 28.5
Duzib106G1757 Durio zibethinus HOM05D000108 ORTHO05D001149 4.1e-06 57.4 125 36.0
Thhalv10016170m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 4.1e-06 57.4 140 33.6
Lalb_Chr02g0153221 Lupinus albus HOM05D000108 ORTHO05D001149 4.1e-06 57.4 140 33.6
Aqoxy1G03455 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.4e-06 57.0 162 26.5
Ciclev10010956m.g Citrus clementina HOM05D000108 ORTHO05D001149 5.4e-06 57.0 137 32.1
Psat0s471g0240 Pisum sativum HOM05D000583 ORTHO05D000442 5.4e-06 57.0 133 26.3
Atru.chr8.1922 Acer truncatum HOM05D000108 ORTHO05D001149 7.1e-06 56.6 109 34.9
Eucgr.K03170 Eucalyptus grandis HOM05D000108 ORTHO05D001149 7.1e-06 56.6 155 29.7
Manes.08G076715 Manihot esculenta HOM05D000108 ORTHO05D001149 7.1e-06 56.6 137 30.7
Nn2g10475 Nelumbo nucifera HOM05D000108 ORTHO05D001149 9.2e-06 56.2 143 30.8
PSO063G2584 Papaver somniferum HOM05D000003 ORTHO05D000651 9.2e-06 56.2 148 29.7


User provided reference genes

Program Settings