Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 2.0e-138 495.7 243 100.0
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 5.6e-93 344.7 244 69.7
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 9.3e-88 327.4 243 66.7
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 2.8e-84 315.8 241 66.4
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 4.0e-83 312.0 245 64.5
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.3e-76 290.4 244 59.8
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.3e-76 290.4 209 67.9
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 8.2e-76 287.7 245 59.6
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 6.9e-75 284.6 245 59.2
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 3.8e-73 278.9 244 58.2
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 7.1e-72 274.6 246 56.1
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.6e-71 273.5 244 57.0
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 4.8e-68 261.9 239 55.6
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 2.4e-67 259.6 210 61.0
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.4e-54 217.2 177 59.9
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 1.5e-50 203.8 205 47.3
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.6e-50 203.0 213 48.8
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.0e-49 201.1 218 44.0
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.7e-49 200.3 213 45.5
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 2.2e-49 199.9 202 47.0
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 3.8e-49 199.1 219 44.7
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 8.5e-49 198.0 200 46.5
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.9e-48 196.8 205 46.3
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.9e-48 196.8 205 46.3
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 9.4e-48 194.5 240 42.9
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.6e-47 193.7 196 47.4
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.0e-46 191.0 196 45.9
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.4e-46 190.7 214 44.9
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.4e-46 190.7 218 45.4
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.9e-46 189.1 194 45.4
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 8.8e-46 188.0 216 44.4
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.1e-45 187.6 217 44.2
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-45 187.2 232 42.2
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-45 187.2 232 42.2
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.5e-45 187.2 198 44.9
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.0e-45 186.8 228 41.7
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 2.6e-45 186.4 182 47.8
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 4.4e-45 185.7 201 44.3
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.4e-45 185.7 213 43.7
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.4e-45 185.7 213 43.7
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.7e-44 183.7 232 41.4
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.8e-44 182.2 193 45.1
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.1e-43 181.0 197 43.1
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.1e-43 181.0 197 43.7
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.8e-43 180.3 193 44.6
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.8e-43 180.3 193 44.6
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.8e-43 180.3 193 44.6
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.4e-43 179.9 205 42.4
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 3.1e-43 179.5 193 44.6
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.1e-43 179.1 202 42.6
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 5.3e-43 178.7 249 38.6
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 7.0e-43 178.3 196 44.4
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 9.1e-43 177.9 204 43.1
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 2.6e-42 176.4 193 43.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.0e-41 174.5 237 38.4
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 2.2e-41 173.3 210 41.4
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.2e-41 173.3 198 41.9
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.9e-41 172.9 199 42.2
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 3.8e-41 172.6 228 39.5
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 5.0e-41 172.2 200 39.0
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 6.5e-41 171.8 193 39.9
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 6.5e-41 171.8 201 41.3
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 6.5e-41 171.8 225 42.7
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.5e-41 171.4 197 43.7
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 8.5e-41 171.4 229 38.9
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.5e-40 170.6 192 42.2
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 4.2e-40 169.1 193 42.0
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 4.2e-40 169.1 195 41.5
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 5.5e-40 168.7 225 39.1
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 5.5e-40 168.7 217 38.2
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 7.2e-40 168.3 193 42.0
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 9.4e-40 167.9 193 41.5
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 9.4e-40 167.9 165 48.5
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 9.4e-40 167.9 189 43.4
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-39 167.5 193 41.5
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.2e-39 167.5 193 41.5
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.2e-39 167.5 203 41.4
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 1.2e-39 167.5 201 41.3
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.6e-39 167.2 207 42.5
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 1.6e-39 167.2 195 42.1
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.1e-39 166.8 232 39.7
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.1e-39 166.8 227 39.2
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.7e-39 165.6 177 43.5
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.7e-39 165.6 230 39.1
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 4.7e-39 165.6 202 39.6
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 6.1e-39 165.2 193 43.0
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 6.1e-39 165.2 238 39.5
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 6.1e-39 165.2 199 43.2
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.0e-38 162.5 205 42.4
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 4.0e-38 162.5 217 40.6
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 6.8e-38 161.8 200 39.5
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 2.0e-37 160.2 236 41.1
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 7.5e-37 158.3 203 36.5
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 7.5e-37 158.3 202 41.6
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 7.5e-37 158.3 218 38.1
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 9.7e-37 157.9 229 36.2
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.2e-36 156.8 232 38.4
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.8e-36 156.4 200 37.5
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.7e-36 156.0 208 41.3
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.7e-36 156.0 165 44.8
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 4.8e-36 155.6 199 37.7
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 8.3e-36 154.8 200 37.5
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.4e-35 153.3 201 35.8
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 2.4e-35 153.3 210 36.7
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.1e-35 152.5 209 35.4
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 5.3e-35 152.1 210 36.7
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 7.0e-35 151.8 180 41.1
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 1.6e-34 150.6 204 42.2
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 5.9e-34 148.7 210 34.8
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 5.9e-34 148.7 184 38.6
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.0e-33 147.9 210 35.7
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 6.5e-33 145.2 213 35.2
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 6.5e-33 145.2 213 35.7
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 8.5e-33 144.8 221 34.4
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-32 144.4 148 44.6
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.1e-32 144.4 178 42.7
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-32 144.1 148 44.6
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.5e-32 144.1 156 42.9
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-32 143.3 148 44.6
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.2e-32 142.9 213 34.7
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 5.5e-32 142.1 224 37.9
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 9.4e-32 141.4 241 36.1
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.6e-31 140.6 221 33.9
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 4.7e-31 139.0 148 43.2
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 2.3e-30 136.7 207 34.3
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.3e-30 136.7 232 34.9
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 3.0e-30 136.3 194 33.5
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 5.2e-30 135.6 227 35.7
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 2.0e-29 133.7 180 38.9
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 4.4e-29 132.5 203 34.0
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 4.4e-29 132.5 143 43.4
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-28 131.0 143 43.4
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 2.2e-28 130.2 210 34.8
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.3e-28 128.6 204 37.3
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.3e-28 128.3 197 36.5
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.1e-27 127.9 205 32.2
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.8e-27 127.1 222 32.0
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-26 124.4 200 32.0
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.6e-26 124.0 114 46.5
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.0e-26 123.6 226 34.1
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.9e-24 117.1 149 42.3
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 8.9e-22 108.2 113 42.5
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 2.0e-21 107.1 119 42.9
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 9.8e-21 104.8 189 29.1
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 8.3e-20 101.7 167 31.7
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 7.0e-19 98.6 166 32.5
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 9.2e-19 98.2 200 29.0
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 6.6e-17 92.0 212 27.8
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.6e-15 87.4 225 29.8
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.6e-15 86.3 135 35.6
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 4.7e-15 85.9 135 35.6
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.5e-13 80.9 82 40.2
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.7e-12 76.3 261 24.5
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 1.2e-10 71.2 178 26.4
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 1.0e-09 68.2 170 27.6
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 5.6e-08 62.4 81 43.2
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 2.8e-07 60.1 82 35.4
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 6.2e-07 58.9 61 42.6
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 1.4e-06 57.8 103 35.9


User provided reference genes

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